Wall clock time and date at job start Tue Mar 31 2020 22:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47535 * 2 1 4 4 C 1.52996 * 109.47290 * 175.58929 * 3 2 1 5 5 H 1.09000 * 109.47280 * 54.04747 * 4 3 2 6 6 C 1.50699 * 109.47096 * 174.04541 * 4 3 2 7 7 O 1.21286 * 119.99955 * 35.43328 * 6 4 3 8 8 N 1.34780 * 120.00279 * 215.43404 * 6 4 3 9 9 C 1.47422 * 125.64588 * 4.85124 * 8 6 4 10 10 C 1.55124 * 104.72428 * 155.81549 * 9 8 6 11 11 C 1.55164 * 101.48430 * 37.29630 * 10 9 8 12 12 H 1.08997 * 110.71477 * 82.69309 * 11 10 9 13 13 N 1.46895 * 110.71855 * 205.96919 * 11 10 9 14 14 C 1.46903 * 111.00073 * 268.52231 * 13 11 10 15 15 C 1.50696 * 109.47198 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99885 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99837 * 179.97438 * 15 14 13 18 18 C 1.37103 * 119.99794 * 179.97438 * 17 15 14 19 19 H 1.08004 * 120.00083 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99986 * 180.02562 * 18 17 15 21 21 N 1.31417 * 119.99636 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00015 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47067 * 59.99907 * 22 20 18 24 24 H 1.48504 * 109.47368 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47349 * 300.00090 * 22 20 18 26 26 C 1.47018 * 125.65080 * 185.16170 * 8 6 4 27 27 C 1.52997 * 109.46920 * 294.04327 * 4 3 2 28 28 C 1.53003 * 109.46807 * 175.27681 * 27 4 3 29 29 C 1.53000 * 109.47304 * 295.27948 * 27 4 3 30 30 H 1.08998 * 109.47070 * 59.99625 * 1 2 3 31 31 H 1.09007 * 109.47003 * 300.00468 * 1 2 3 32 32 H 1.08994 * 109.47727 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47070 * 120.00375 * 2 1 3 34 34 H 1.09007 * 109.47003 * 239.99532 * 2 1 3 35 35 H 1.09003 * 109.46804 * 295.59004 * 3 2 1 36 36 H 1.08999 * 109.46826 * 55.58254 * 3 2 1 37 37 H 1.09000 * 110.36959 * 274.74946 * 9 8 6 38 38 H 1.09007 * 110.36799 * 37.06878 * 9 8 6 39 39 H 1.08993 * 111.19496 * 279.19155 * 10 9 8 40 40 H 1.09004 * 110.90394 * 155.27476 * 10 9 8 41 41 H 1.00896 * 110.99888 * 144.56734 * 13 11 10 42 42 H 1.09005 * 109.46699 * 300.00232 * 14 13 11 43 43 H 1.08997 * 109.47374 * 59.99895 * 14 13 11 44 44 H 0.97002 * 120.00377 * 0.02562 * 17 15 14 45 45 H 0.97003 * 119.99369 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.87958 * 300.43615 * 26 8 6 47 47 H 1.08996 * 109.88755 * 61.44671 * 26 8 6 48 48 H 1.09000 * 109.47315 * 55.28438 * 27 4 3 49 49 H 1.09004 * 109.46927 * 65.03558 * 28 27 4 50 50 H 1.09002 * 109.46705 * 185.02853 * 28 27 4 51 51 H 1.08995 * 109.47401 * 305.03066 * 28 27 4 52 52 H 1.08996 * 109.46968 * 64.60634 * 29 27 4 53 53 H 1.09002 * 109.46628 * 184.60669 * 29 27 4 54 54 H 1.09001 * 109.47171 * 304.60119 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5660 1.4438 0.1109 5 1 3.9881 0.8196 -0.6767 6 6 4.0790 2.8531 -0.0358 7 8 3.4393 3.7811 0.4121 8 7 5.2488 3.0824 -0.6648 9 6 6.0743 2.0655 -1.3414 10 6 6.9046 2.8607 -2.3828 11 6 7.2051 4.1689 -1.6044 12 1 8.0635 4.0370 -0.9457 13 7 7.4265 5.2863 -2.5318 14 6 8.8508 5.4184 -2.8666 15 6 9.0385 6.5726 -3.8171 16 8 8.0800 7.2210 -4.1804 17 7 10.2714 6.8843 -4.2635 18 6 10.4420 7.9340 -5.1288 19 1 9.5886 8.5114 -5.4523 20 6 11.7130 8.2551 -5.5894 21 7 12.7515 7.5528 -5.1953 22 14 11.9455 9.6848 -6.7688 23 1 11.4690 10.9371 -6.1285 24 1 13.3854 9.8189 -7.1065 25 1 11.1670 9.4355 -8.0085 26 6 5.9161 4.3870 -0.7844 27 6 3.9785 0.8905 1.4764 28 6 5.5032 0.7816 1.5430 29 6 3.4857 1.8311 2.5779 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.7427 1.9329 -0.9269 36 1 1.6135 1.9786 0.8478 37 1 6.7316 1.5725 -0.6252 38 1 5.4400 1.3335 -1.8416 39 1 6.3200 3.0653 -3.2797 40 1 7.8257 2.3331 -2.6306 41 1 7.0626 6.1479 -2.1533 42 1 9.4224 5.6009 -1.9565 43 1 9.2003 4.4994 -3.3369 44 1 11.0379 6.3655 -3.9733 45 1 13.6389 7.7771 -5.5167 46 1 5.2634 5.0913 -1.3002 47 1 6.1641 4.7687 0.2060 48 1 3.5373 -0.0963 1.6170 49 1 5.9412 1.7784 1.4921 50 1 5.7928 0.3049 2.4796 51 1 5.8617 0.1838 0.7051 52 1 2.3959 1.8452 2.5830 53 1 3.8492 1.4810 3.5441 54 1 3.8612 2.8373 2.3914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186019552.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:40 Heat of formation + Delta-G solvation = -113.299808 kcal Electronic energy + Delta-G solvation = -30075.410155 eV Core-core repulsion = 26045.253510 eV Total energy + Delta-G solvation = -4030.156645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.61135 -40.21703 -39.14852 -37.50901 -36.21340 -35.56675 -34.64173 -33.27183 -31.75253 -30.56053 -29.93897 -28.19328 -27.65258 -26.03645 -25.18755 -24.02049 -22.82319 -21.73152 -21.34907 -21.01210 -19.91482 -19.31009 -18.22945 -17.72079 -17.62219 -16.87009 -16.76711 -16.39634 -16.30447 -15.96189 -15.66361 -15.24418 -14.91848 -14.82013 -14.68420 -14.50955 -14.33761 -13.99944 -13.94465 -13.74632 -13.56574 -13.47698 -13.24506 -12.99629 -12.89532 -12.87731 -12.78391 -12.52840 -12.43090 -12.37896 -12.15615 -12.11425 -12.04455 -11.87726 -11.78555 -11.66683 -11.50700 -11.45952 -11.22170 -10.60514 -10.35203 -10.01713 -9.68128 -9.39158 -8.46822 -5.95409 1.39597 1.41821 1.52385 1.62534 1.90516 2.05416 2.29494 2.91554 3.20540 3.29716 3.51071 3.63528 3.68417 3.76412 3.84763 4.10971 4.12517 4.18694 4.27752 4.31070 4.32357 4.35504 4.38044 4.50750 4.54389 4.59434 4.62886 4.67226 4.70995 4.75333 4.80508 4.81399 4.88105 4.98201 5.00582 5.02150 5.05907 5.11044 5.21824 5.24473 5.28650 5.31858 5.38533 5.40485 5.40850 5.46446 5.56422 5.88526 6.09516 6.27916 6.52750 6.60236 7.12637 7.16457 7.56218 8.12022 8.70120 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027705 B = 0.001766 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.390136 B =15851.780490 C =16139.951688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.104 4.104 4 C -0.093 4.093 5 H 0.112 0.888 6 C 0.529 3.471 7 O -0.585 6.585 8 N -0.614 5.614 9 C 0.098 3.902 10 C -0.121 4.121 11 C 0.079 3.921 12 H 0.082 0.918 13 N -0.673 5.673 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.571 5.571 18 C -0.336 4.336 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.918 5.918 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.269 1.269 25 H -0.273 1.273 26 C 0.108 3.892 27 C -0.078 4.078 28 C -0.154 4.154 29 C -0.152 4.152 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.343 0.657 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.398 0.602 45 H 0.278 0.722 46 H 0.051 0.949 47 H 0.064 0.936 48 H 0.108 0.892 49 H 0.038 0.962 50 H 0.067 0.933 51 H 0.078 0.922 52 H 0.054 0.946 53 H 0.064 0.936 54 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.683 -23.190 14.533 30.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.142 4.142 4 C -0.114 4.114 5 H 0.130 0.870 6 C 0.320 3.680 7 O -0.465 6.465 8 N -0.347 5.347 9 C -0.023 4.023 10 C -0.159 4.159 11 C -0.031 4.031 12 H 0.100 0.900 13 N -0.306 5.306 14 C -0.064 4.064 15 C 0.223 3.777 16 O -0.513 6.513 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.199 1.199 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.016 4.016 27 C -0.097 4.097 28 C -0.211 4.211 29 C -0.209 4.209 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.163 0.837 42 H 0.088 0.912 43 H 0.129 0.871 44 H 0.232 0.768 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.126 0.874 49 H 0.057 0.943 50 H 0.086 0.914 51 H 0.097 0.903 52 H 0.073 0.927 53 H 0.083 0.917 54 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -14.650 -22.634 13.962 30.362 hybrid contribution 0.862 1.682 0.221 1.903 sum -13.788 -20.952 14.183 28.814 Atomic orbital electron populations 1.21782 0.95857 1.02123 1.01470 1.21556 0.95904 0.94784 1.03254 1.21497 0.92574 0.98436 1.01724 1.21499 0.97467 0.91257 1.01133 0.86974 1.20990 0.78706 0.92322 0.75968 1.90674 1.57721 1.47397 1.50719 1.48559 1.21573 1.09840 1.54776 1.22766 0.93848 0.91043 0.94692 1.22932 1.01315 0.94024 0.97661 1.22620 0.95867 0.92279 0.92321 0.90016 1.60188 1.15229 1.08541 1.46633 1.21584 0.89982 0.97229 0.97598 1.20925 0.82831 0.88075 0.85843 1.90505 1.41100 1.56408 1.63284 1.41906 1.07703 1.29586 1.41663 1.19619 0.94300 1.09366 1.23295 0.90505 1.26004 0.94256 1.01169 0.99660 1.69660 0.99690 1.41123 1.45380 0.85012 0.77560 0.77784 0.78115 1.19874 1.19354 1.19812 1.21908 0.93679 0.86608 0.99424 1.21116 0.97045 1.00127 0.91409 1.22026 0.94202 1.01493 1.03374 1.21940 1.01262 0.98928 0.98790 0.93410 0.93177 0.91542 0.90310 0.90843 0.93446 0.92201 0.88462 0.88329 0.91264 0.87738 0.83747 0.91188 0.87098 0.76836 0.91264 0.93097 0.91806 0.87416 0.94272 0.91424 0.90325 0.92685 0.91716 0.94805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.94 16 2 C -0.12 -1.17 5.80 30.59 0.18 -1.00 16 3 C -0.10 -1.65 4.12 30.59 0.13 -1.52 16 4 C -0.09 -1.36 1.69 -11.54 -0.02 -1.38 16 5 H 0.11 1.11 6.35 -2.39 -0.02 1.10 16 6 C 0.53 12.25 5.20 87.66 0.46 12.70 16 7 O -0.58 -18.89 15.19 -3.05 -0.05 -18.94 16 8 N -0.61 -12.60 2.90 -811.36 -2.35 -14.95 16 9 C 0.10 1.27 5.71 86.93 0.50 1.77 16 10 C -0.12 -2.07 6.78 32.06 0.22 -1.85 16 11 C 0.08 1.71 3.28 46.11 0.15 1.86 16 12 H 0.08 1.48 7.83 -2.39 -0.02 1.46 16 13 N -0.67 -20.50 5.97 -489.45 -2.92 -23.43 16 14 C 0.07 2.20 6.03 85.56 0.52 2.72 16 15 C 0.44 20.45 7.82 87.66 0.69 21.13 16 16 O -0.63 -34.94 15.78 -3.07 -0.05 -34.99 16 17 N -0.57 -28.93 5.29 -306.98 -1.62 -30.55 16 18 C -0.34 -19.07 9.68 84.04 0.81 -18.26 16 19 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 20 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 21 N -0.92 -48.91 13.05 21.66 0.28 -48.62 16 22 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.11 2.59 6.38 86.73 0.55 3.14 16 27 C -0.08 -0.92 2.57 -10.79 -0.03 -0.95 16 28 C -0.15 -1.55 7.64 71.98 0.55 -1.00 16 29 C -0.15 -2.51 8.43 71.98 0.61 -1.90 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 0.60 6.32 -2.39 -0.02 0.58 16 34 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.06 1.16 6.29 -2.39 -0.02 1.14 16 37 H 0.10 0.84 6.47 -2.39 -0.02 0.83 16 38 H 0.10 0.90 6.86 -2.38 -0.02 0.89 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.34 11.53 8.02 -89.70 -0.72 10.81 16 42 H 0.07 1.94 8.08 -2.38 -0.02 1.92 16 43 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 45 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 46 H 0.05 1.51 7.90 -2.38 -0.02 1.49 16 47 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.11 0.82 6.31 -2.39 -0.02 0.80 16 49 H 0.04 0.55 6.88 -2.38 -0.02 0.54 16 50 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.08 0.49 7.29 -2.39 -0.02 0.47 16 52 H 0.05 0.93 6.66 -2.39 -0.02 0.91 16 53 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 54 H 0.03 0.78 6.07 -2.39 -0.01 0.76 16 Total: -1.00 -74.07 415.84 1.25 -72.82 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: -0.55 Total: 39.34 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 6.48 Total: 14.43 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -6.61 Total: -117.55 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -0.09 Total: -53.92 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -74.07 1.25 -72.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186019552.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.481 kcal (2) G-P(sol) polarization free energy of solvation -74.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds