Wall clock time and date at job start Tue Mar 31 2020 22:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47132 * 2 1 4 4 C 1.53009 * 109.46766 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46826 * 304.99840 * 4 3 2 6 6 C 1.52999 * 109.47179 * 65.00305 * 4 3 2 7 7 C 1.53004 * 109.46920 * 185.00088 * 4 3 2 8 8 C 1.50690 * 109.46938 * 175.00158 * 7 4 3 9 9 O 1.21285 * 120.00296 * 359.97438 * 8 7 4 10 10 N 1.34780 * 120.00061 * 179.97438 * 8 7 4 11 11 C 1.47027 * 125.64562 * 359.69081 * 10 8 7 12 12 C 1.54331 * 107.26407 * 178.84921 * 11 10 8 13 13 C 1.55160 * 103.02344 * 338.13890 * 12 11 10 14 14 H 1.08995 * 111.00406 * 277.23532 * 13 12 11 15 15 N 1.46898 * 111.03920 * 153.39487 * 13 12 11 16 16 C 1.46902 * 110.99846 * 61.64107 * 15 13 12 17 17 C 1.46897 * 111.00082 * 185.59370 * 15 13 12 18 18 C 1.50699 * 109.46939 * 169.99972 * 17 15 13 19 19 O 1.21293 * 120.00246 * 0.02562 * 18 17 15 20 20 N 1.34783 * 119.99844 * 180.02562 * 18 17 15 21 21 C 1.37098 * 119.99946 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00022 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99794 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00088 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99864 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47197 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47208 * 119.99733 * 25 23 21 28 28 H 1.48500 * 109.46846 * 239.99627 * 25 23 21 29 29 C 1.47427 * 125.65205 * 179.97438 * 10 8 7 30 30 H 1.09004 * 109.47711 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47339 * 300.00381 * 1 2 3 32 32 H 1.09008 * 109.46851 * 60.00054 * 1 2 3 33 33 H 1.09002 * 109.46843 * 239.99605 * 2 1 3 34 34 H 1.09000 * 109.46997 * 120.00228 * 2 1 3 35 35 H 1.08997 * 109.47146 * 60.00229 * 3 2 1 36 36 H 1.08997 * 109.47622 * 299.99548 * 3 2 1 37 37 H 1.08999 * 109.47377 * 59.99560 * 6 4 3 38 38 H 1.08995 * 109.47149 * 180.02562 * 6 4 3 39 39 H 1.09004 * 109.46469 * 299.99519 * 6 4 3 40 40 H 1.09006 * 109.46833 * 294.99792 * 7 4 3 41 41 H 1.08996 * 109.47009 * 54.99256 * 7 4 3 42 42 H 1.08998 * 109.88281 * 298.39324 * 11 10 8 43 43 H 1.08997 * 109.88099 * 59.55779 * 11 10 8 44 44 H 1.08997 * 110.85182 * 219.67355 * 12 11 10 45 45 H 1.09002 * 110.66972 * 96.52494 * 12 11 10 46 46 H 1.08996 * 109.46891 * 65.78757 * 16 15 13 47 47 H 1.08994 * 109.46952 * 185.78774 * 16 15 13 48 48 H 1.09003 * 109.47297 * 305.78811 * 16 15 13 49 49 H 1.09000 * 109.47194 * 290.00364 * 17 15 13 50 50 H 1.09001 * 109.46681 * 50.00387 * 17 15 13 51 51 H 0.97003 * 119.99666 * 359.97438 * 20 18 17 52 52 H 0.97006 * 119.99659 * 180.02562 * 24 23 21 53 53 H 1.09004 * 110.36334 * 322.93341 * 29 10 8 54 54 H 1.09004 * 110.36499 * 85.14253 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 6 4.0795 0.8330 -1.3083 7 6 4.0802 2.8794 0.1251 8 6 5.5820 2.8703 0.2479 9 8 6.1851 1.8180 0.2366 10 7 6.2552 4.0314 0.3705 11 6 5.6533 5.3727 0.3922 12 6 6.8015 6.3871 0.5776 13 6 7.9286 5.5278 1.2090 14 1 7.7901 5.4318 2.2858 15 7 9.2524 6.0840 0.8988 16 6 9.3975 7.4373 1.4517 17 6 10.3213 5.2002 1.3827 18 6 11.6460 5.6697 0.8386 19 8 11.6948 6.6448 0.1190 20 7 12.7765 5.0059 1.1517 21 6 13.9816 5.4332 0.6572 22 1 14.0251 6.3015 0.0164 23 6 15.1469 4.7486 0.9795 24 7 15.0940 3.6917 1.7588 25 14 16.7889 5.3304 0.3051 26 1 16.5786 6.5326 -0.5410 27 1 17.6946 5.6699 1.4319 28 1 17.3988 4.2510 -0.5122 29 6 7.7176 4.1675 0.4990 30 1 -0.3635 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.7158 1.4225 -2.1499 38 1 5.1694 0.8325 -1.3086 39 1 3.7161 -0.1908 -1.3978 40 1 3.7915 3.4461 -0.7601 41 1 3.6458 3.3429 1.0108 42 1 5.1367 5.5624 -0.5487 43 1 4.9535 5.4514 1.2241 44 1 6.5047 7.1899 1.2525 45 1 7.1172 6.7909 -0.3843 46 1 9.3809 7.3886 2.5404 47 1 10.3440 7.8650 1.1215 48 1 8.5751 8.0622 1.1034 49 1 10.3470 5.2238 2.4721 50 1 10.1307 4.1813 1.0457 51 1 12.7374 4.2262 1.7275 52 1 15.9076 3.2140 1.9841 53 1 8.1222 3.3565 1.1047 54 1 8.1858 4.1749 -0.4853 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189270428.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:42 Heat of formation + Delta-G solvation = -104.508873 kcal Electronic energy + Delta-G solvation = -29748.505755 eV Core-core repulsion = 25718.730314 eV Total energy + Delta-G solvation = -4029.775441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.34462 -40.38729 -39.18141 -37.56111 -36.69941 -35.78530 -33.59257 -33.29437 -32.05402 -30.37900 -29.30906 -28.54581 -27.43959 -26.72817 -25.19142 -23.99956 -22.71462 -21.42593 -21.07449 -20.84408 -20.00649 -19.80731 -18.27037 -17.83431 -17.47962 -16.88892 -16.59499 -16.27849 -16.13903 -15.95874 -15.74504 -15.44969 -15.09464 -15.01270 -14.69593 -14.54211 -14.30914 -14.21070 -13.86801 -13.70320 -13.58605 -13.42298 -13.16055 -13.08858 -12.83480 -12.79462 -12.63398 -12.53018 -12.42432 -12.37935 -12.29219 -12.11912 -11.90697 -11.82987 -11.77935 -11.64221 -11.47205 -11.46645 -11.25343 -10.70944 -10.29935 -10.01209 -9.66260 -9.26630 -8.47100 -5.96036 1.35955 1.40971 1.55492 1.64802 1.89938 2.03864 2.28065 2.76281 3.19310 3.30035 3.42064 3.67491 3.76198 3.80542 3.97231 4.04783 4.16695 4.22310 4.27861 4.29381 4.33713 4.39732 4.44590 4.47111 4.55409 4.58477 4.63043 4.70436 4.72611 4.74431 4.80017 4.83151 4.90127 4.94730 4.99444 5.01128 5.08131 5.17434 5.19194 5.22138 5.27449 5.30370 5.34070 5.40869 5.44874 5.56567 5.59692 5.83732 6.03469 6.19061 6.54837 6.59371 7.12169 7.18114 7.55162 8.10513 8.70627 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.001874 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.019242 B =14941.611656 C =16079.282614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.106 4.106 4 C -0.075 4.075 5 H 0.055 0.945 6 C -0.152 4.152 7 C -0.122 4.122 8 C 0.517 3.483 9 O -0.585 6.585 10 N -0.620 5.620 11 C 0.103 3.897 12 C -0.116 4.116 13 C 0.072 3.928 14 H 0.067 0.933 15 N -0.524 5.524 16 C 0.028 3.972 17 C 0.055 3.945 18 C 0.443 3.557 19 O -0.610 6.610 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.081 0.919 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.995 3.005 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.112 3.888 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.040 0.960 39 H 0.056 0.944 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.029 0.971 47 H 0.056 0.944 48 H 0.092 0.908 49 H 0.067 0.933 50 H 0.096 0.904 51 H 0.394 0.606 52 H 0.277 0.723 53 H 0.058 0.942 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.759 -0.347 0.544 30.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.143 4.143 4 C -0.094 4.094 5 H 0.074 0.926 6 C -0.209 4.209 7 C -0.161 4.161 8 C 0.308 3.692 9 O -0.465 6.465 10 N -0.355 5.355 11 C -0.019 4.019 12 C -0.154 4.154 13 C -0.037 4.037 14 H 0.084 0.916 15 N -0.249 5.249 16 C -0.119 4.119 17 C -0.076 4.076 18 C 0.231 3.769 19 O -0.496 6.496 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.099 0.901 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.012 4.012 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.127 0.873 45 H 0.099 0.901 46 H 0.047 0.953 47 H 0.075 0.925 48 H 0.110 0.890 49 H 0.085 0.915 50 H 0.114 0.886 51 H 0.228 0.772 52 H 0.086 0.914 53 H 0.077 0.923 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -30.284 -0.398 -0.392 30.290 hybrid contribution 1.576 -0.633 0.851 1.899 sum -28.709 -1.031 0.459 28.731 Atomic orbital electron populations 1.21763 0.95130 1.01741 1.02148 1.21588 0.96338 0.97091 1.01702 1.21612 0.92585 0.97070 1.03073 1.20894 0.96006 0.94237 0.98293 0.92616 1.21949 1.00930 1.00916 0.97134 1.21786 0.88232 0.99775 1.06288 1.21236 0.91561 0.81440 0.74914 1.90684 1.71680 1.31938 1.52199 1.48626 1.07055 1.07436 1.72336 1.22311 0.96255 0.79259 1.04101 1.22726 0.92446 0.97533 1.02712 1.22800 0.88961 0.93864 0.98034 0.91561 1.61551 1.00435 1.02746 1.60178 1.22440 1.03641 0.89156 0.96673 1.21750 0.89457 0.97862 0.98508 1.20661 0.86007 0.85467 0.84796 1.90454 1.87234 1.29920 1.42008 1.41964 1.05781 1.28301 1.45291 1.19716 0.84535 1.12857 1.28957 0.90089 1.26070 1.02792 0.95725 0.96855 1.69695 1.30805 1.19279 1.36579 0.84846 0.76984 0.78196 0.78151 1.19602 1.19537 1.19821 1.22050 0.81904 0.97019 1.00186 0.92883 0.92342 0.92327 0.92302 0.92816 0.90709 0.90781 0.92192 0.94073 0.92528 0.86700 0.86291 0.88984 0.88277 0.87287 0.90139 0.95280 0.92498 0.88976 0.91503 0.88557 0.77230 0.91372 0.92343 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.13 -1.48 5.69 30.59 0.17 -1.30 16 3 C -0.11 -1.07 4.68 30.60 0.14 -0.93 16 4 C -0.08 -1.16 2.04 -10.79 -0.02 -1.18 16 5 H 0.06 1.11 7.95 -2.39 -0.02 1.09 16 6 C -0.15 -2.84 8.69 71.98 0.63 -2.22 16 7 C -0.12 -1.59 4.37 29.85 0.13 -1.46 16 8 C 0.52 11.92 7.57 87.65 0.66 12.58 16 9 O -0.58 -19.19 14.22 -3.04 -0.04 -19.24 16 10 N -0.62 -12.97 3.33 -811.79 -2.70 -15.67 16 11 C 0.10 1.23 6.49 86.73 0.56 1.79 16 12 C -0.12 -1.76 5.32 31.79 0.17 -1.60 16 13 C 0.07 1.65 2.71 46.30 0.13 1.78 16 14 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 15 N -0.52 -16.37 4.40 -893.49 -3.93 -20.30 16 16 C 0.03 0.83 9.05 127.69 1.16 1.99 16 17 C 0.06 2.00 5.33 85.56 0.46 2.45 16 18 C 0.44 21.50 7.52 87.66 0.66 22.16 16 19 O -0.61 -33.61 13.88 -3.07 -0.04 -33.65 16 20 N -0.58 -30.37 5.29 -306.98 -1.62 -31.99 16 21 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 22 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 23 C -0.02 -0.82 5.50 84.92 0.47 -0.35 16 24 N -0.92 -51.01 13.05 21.66 0.28 -50.73 16 25 Si 0.99 43.69 29.55 68.60 2.03 45.71 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 29 C 0.11 2.97 5.35 86.85 0.46 3.43 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.06 0.74 6.56 -2.39 -0.02 0.72 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.04 1.06 5.95 -2.39 -0.01 1.05 16 39 H 0.06 0.99 6.56 -2.38 -0.02 0.98 16 40 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 44 H 0.11 1.10 7.97 -2.39 -0.02 1.08 16 45 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.03 0.76 8.13 -2.39 -0.02 0.74 16 47 H 0.06 2.18 5.91 -2.39 -0.01 2.17 16 48 H 0.09 2.08 6.92 -2.39 -0.02 2.06 16 49 H 0.07 2.17 8.11 -2.39 -0.02 2.15 16 50 H 0.10 3.32 6.70 -2.39 -0.02 3.31 16 51 H 0.39 20.01 7.90 -92.71 -0.73 19.27 16 52 H 0.28 14.31 8.31 -92.70 -0.77 13.54 16 53 H 0.06 1.74 7.68 -2.38 -0.02 1.72 16 54 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -74.99 420.75 1.41 -73.58 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: 0.14 Total: 34.09 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 7.30 Total: 18.19 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -7.97 Total: -118.69 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: -0.09 Total: -52.89 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -74.99 1.41 -73.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189270428.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.930 kcal (2) G-P(sol) polarization free energy of solvation -74.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds