Wall clock time and date at job start Tue Mar 31 2020 22:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46914 * 2 1 4 4 C 1.53003 * 109.46914 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.47451 * 54.99533 * 4 3 2 6 6 C 1.53006 * 109.46885 * 294.99743 * 4 3 2 7 7 C 1.52996 * 109.46852 * 175.00002 * 4 3 2 8 8 C 1.50708 * 109.46898 * 184.99517 * 7 4 3 9 9 O 1.21278 * 120.00051 * 0.02562 * 8 7 4 10 10 N 1.34771 * 119.99912 * 179.97438 * 8 7 4 11 11 C 1.47025 * 125.65099 * 359.97438 * 10 8 7 12 12 C 1.54326 * 107.26880 * 181.09700 * 11 10 8 13 13 C 1.55153 * 102.94518 * 22.19496 * 12 11 10 14 14 H 1.08998 * 111.00333 * 82.60722 * 13 12 11 15 15 N 1.46903 * 111.00109 * 206.42396 * 13 12 11 16 16 C 1.46902 * 110.99672 * 171.46288 * 15 13 12 17 17 C 1.46896 * 110.99829 * 295.41459 * 15 13 12 18 18 C 1.50703 * 109.47254 * 170.00329 * 17 15 13 19 19 O 1.21293 * 119.99482 * 359.97438 * 18 17 15 20 20 N 1.34777 * 120.00290 * 180.02562 * 18 17 15 21 21 C 1.37092 * 119.99729 * 180.27555 * 20 18 17 22 22 H 1.08002 * 120.00496 * 359.72414 * 21 20 18 23 23 C 1.38958 * 120.00096 * 179.72242 * 21 20 18 24 24 N 1.31414 * 119.99347 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00310 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47274 * 89.99972 * 25 23 21 27 27 H 1.48505 * 109.46713 * 210.00050 * 25 23 21 28 28 H 1.48502 * 109.46813 * 329.99470 * 25 23 21 29 29 C 1.47476 * 125.62722 * 180.02562 * 10 8 7 30 30 H 1.09004 * 109.46938 * 60.00246 * 1 2 3 31 31 H 1.08999 * 109.47203 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47267 * 300.00183 * 1 2 3 33 33 H 1.08995 * 109.47267 * 239.99817 * 2 1 3 34 34 H 1.08994 * 109.46805 * 119.99699 * 2 1 3 35 35 H 1.08995 * 109.47303 * 59.99839 * 3 2 1 36 36 H 1.09004 * 109.47117 * 299.99644 * 3 2 1 37 37 H 1.09001 * 109.46891 * 300.00248 * 6 4 3 38 38 H 1.08994 * 109.46994 * 60.00098 * 6 4 3 39 39 H 1.09000 * 109.47167 * 180.02562 * 6 4 3 40 40 H 1.09005 * 109.47221 * 65.00357 * 7 4 3 41 41 H 1.08996 * 109.47244 * 304.99592 * 7 4 3 42 42 H 1.09001 * 109.88060 * 61.67710 * 11 10 8 43 43 H 1.08997 * 109.88279 * 300.51537 * 11 10 8 44 44 H 1.09000 * 110.71856 * 263.82299 * 12 11 10 45 45 H 1.09002 * 110.86782 * 140.63062 * 12 11 10 46 46 H 1.08995 * 109.47123 * 183.94876 * 16 15 13 47 47 H 1.08995 * 109.47210 * 303.95328 * 16 15 13 48 48 H 1.09004 * 109.46831 * 63.95591 * 16 15 13 49 49 H 1.08998 * 109.47322 * 50.00331 * 17 15 13 50 50 H 1.09002 * 109.47668 * 290.00528 * 17 15 13 51 51 H 0.97001 * 119.99727 * 359.97438 * 20 18 17 52 52 H 0.97004 * 119.99790 * 179.97438 * 24 23 21 53 53 H 1.08998 * 110.40322 * 37.01503 * 29 10 8 54 54 H 1.08997 * 110.34865 * 274.67752 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8408 6 6 4.0794 0.8331 1.3084 7 6 4.0800 2.8795 -0.1251 8 6 5.5820 2.8705 -0.2478 9 8 6.1851 1.8184 -0.2364 10 7 6.2550 4.0316 -0.3714 11 6 5.6523 5.3724 -0.4013 12 6 6.8009 6.3869 -0.5834 13 6 7.9281 5.5266 -1.2131 14 1 7.7898 5.4289 -2.2898 15 7 9.2514 6.0842 -0.9033 16 6 10.3201 5.1677 -1.3226 17 6 9.4218 7.4077 -1.5175 18 6 10.6758 8.0513 -0.9842 19 8 11.3599 7.4652 -0.1720 20 7 11.0365 9.2785 -1.4089 21 6 12.1803 9.8615 -0.9280 22 1 12.7899 9.3393 -0.2054 23 6 12.5553 11.1243 -1.3702 24 7 11.8138 11.7594 -2.2498 25 14 14.1141 11.9184 -0.7154 26 1 15.2609 11.5466 -1.5824 27 1 13.9539 13.3948 -0.7126 28 1 14.3666 11.4454 0.6694 29 6 7.7178 4.1672 -0.5000 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 3.7156 1.4228 2.1499 38 1 3.7160 -0.1905 1.3980 39 1 5.1694 0.8335 1.3091 40 1 3.7913 3.4463 0.7601 41 1 3.6458 3.3430 -1.0109 42 1 5.1319 5.5659 0.5367 43 1 4.9558 5.4472 -1.2363 44 1 7.1154 6.7902 0.3792 45 1 6.5060 7.1902 -1.2586 46 1 11.2856 5.5722 -1.0190 47 1 10.1697 4.1954 -0.8536 48 1 10.2979 5.0555 -2.4067 49 1 8.5620 8.0331 -1.2773 50 1 9.5010 7.2989 -2.5992 51 1 10.4892 9.7472 -2.0582 52 1 12.0754 12.6411 -2.5583 53 1 8.1231 3.3554 -1.1040 54 1 8.1854 4.1786 0.4845 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189270429.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:45 Heat of formation + Delta-G solvation = -104.138413 kcal Electronic energy + Delta-G solvation = -29580.828722 eV Core-core repulsion = 25551.069345 eV Total energy + Delta-G solvation = -4029.759377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.34071 -40.36980 -39.17003 -37.55732 -36.69147 -35.76272 -33.59213 -33.25873 -32.02161 -30.57048 -29.15715 -28.35038 -27.44137 -26.91478 -25.30822 -23.79238 -22.73997 -21.48381 -20.97511 -20.87307 -20.00169 -19.78647 -18.24637 -17.83600 -17.51685 -16.87760 -16.58395 -16.29201 -16.03376 -15.98987 -15.70560 -15.28593 -15.17600 -15.00585 -14.71255 -14.58922 -14.30544 -14.14310 -13.83710 -13.70754 -13.61523 -13.43205 -13.17187 -13.07224 -12.95287 -12.81758 -12.63701 -12.53885 -12.40652 -12.34846 -12.20731 -12.12089 -11.90951 -11.82290 -11.77783 -11.64207 -11.46678 -11.44137 -11.25333 -10.71560 -10.27271 -9.97639 -9.66291 -9.26503 -8.44693 -5.92657 1.38826 1.42950 1.55088 1.64328 1.89239 2.08224 2.30486 2.78455 3.22207 3.29554 3.44898 3.67794 3.75649 3.80856 3.97299 4.05620 4.16916 4.22304 4.29220 4.33014 4.34846 4.39341 4.44593 4.52972 4.55030 4.57187 4.60739 4.68383 4.72053 4.74669 4.80024 4.83249 4.89312 4.95096 4.99553 5.02171 5.08182 5.12279 5.18612 5.22917 5.26143 5.29125 5.33965 5.43432 5.44681 5.56656 5.59559 5.84759 6.04578 6.18237 6.53959 6.63626 7.15913 7.17091 7.59533 8.15982 8.72593 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.037142 B = 0.001630 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.678150 B =17177.040635 C =17574.862041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.107 4.107 4 C -0.074 4.074 5 H 0.057 0.943 6 C -0.152 4.152 7 C -0.124 4.124 8 C 0.520 3.480 9 O -0.583 6.583 10 N -0.621 5.621 11 C 0.104 3.896 12 C -0.124 4.124 13 C 0.072 3.928 14 H 0.067 0.933 15 N -0.525 5.525 16 C 0.025 3.975 17 C 0.061 3.939 18 C 0.441 3.559 19 O -0.616 6.616 20 N -0.573 5.573 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.274 1.274 29 C 0.119 3.881 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.060 0.940 47 H 0.072 0.928 48 H 0.029 0.971 49 H 0.117 0.883 50 H 0.068 0.932 51 H 0.396 0.604 52 H 0.277 0.723 53 H 0.062 0.938 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.940 -14.950 0.185 29.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.145 4.145 4 C -0.093 4.093 5 H 0.075 0.925 6 C -0.209 4.209 7 C -0.163 4.163 8 C 0.311 3.689 9 O -0.464 6.464 10 N -0.355 5.355 11 C -0.018 4.018 12 C -0.162 4.162 13 C -0.037 4.037 14 H 0.085 0.915 15 N -0.249 5.249 16 C -0.123 4.123 17 C -0.070 4.070 18 C 0.228 3.772 19 O -0.502 6.502 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.210 4.210 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.199 1.199 29 C -0.004 4.004 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.096 0.904 45 H 0.124 0.876 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.048 0.952 49 H 0.135 0.865 50 H 0.085 0.915 51 H 0.230 0.770 52 H 0.086 0.914 53 H 0.081 0.919 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.177 -15.710 1.165 28.856 hybrid contribution 1.178 0.505 -0.883 1.556 sum -22.998 -15.205 0.282 27.572 Atomic orbital electron populations 1.21765 0.95228 1.01745 1.02103 1.21581 0.96258 0.97022 1.01753 1.21620 0.92736 0.97114 1.02994 1.20885 0.95899 0.94159 0.98402 0.92465 1.21946 1.01002 1.00902 0.97021 1.21796 0.88457 0.99837 1.06198 1.21162 0.91453 0.81406 0.74886 1.90665 1.71621 1.31777 1.52290 1.48642 1.07212 1.07341 1.72291 1.22266 0.96125 0.79348 1.04045 1.22778 0.93013 0.97740 1.02715 1.22806 0.88841 0.93960 0.98099 0.91497 1.61544 1.02008 1.01796 1.59578 1.22427 0.95789 0.96294 0.97761 1.21732 0.96596 0.91338 0.97373 1.20780 0.88906 0.82436 0.85040 1.90474 1.57239 1.64362 1.38089 1.41904 1.23451 1.15482 1.40260 1.19636 1.01961 1.00461 1.24103 0.90464 1.25968 1.02006 0.96512 0.96556 1.69665 1.39852 1.15227 1.31285 0.84973 0.77696 0.77497 0.78453 1.19815 1.19524 1.19924 1.21998 0.81678 0.96544 1.00211 0.92422 0.92831 0.92390 0.92726 0.92215 0.90903 0.90831 0.92328 0.92456 0.93885 0.86858 0.86452 0.89111 0.88330 0.90431 0.87572 0.92148 0.90970 0.95211 0.86502 0.91454 0.76965 0.91357 0.91948 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.13 -1.37 5.69 30.60 0.17 -1.20 16 3 C -0.11 -1.04 4.68 30.60 0.14 -0.89 16 4 C -0.07 -1.08 2.04 -10.79 -0.02 -1.10 16 5 H 0.06 1.07 7.95 -2.39 -0.02 1.05 16 6 C -0.15 -2.63 8.69 71.98 0.63 -2.01 16 7 C -0.12 -1.56 4.37 29.85 0.13 -1.43 16 8 C 0.52 11.32 7.57 87.66 0.66 11.98 16 9 O -0.58 -17.86 14.22 -3.02 -0.04 -17.90 16 10 N -0.62 -12.45 3.33 -811.60 -2.70 -15.15 16 11 C 0.10 1.32 6.49 86.73 0.56 1.88 16 12 C -0.12 -2.09 5.47 31.78 0.17 -1.92 16 13 C 0.07 1.63 2.71 46.32 0.13 1.76 16 14 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 15 N -0.52 -16.30 4.40 -893.39 -3.93 -20.23 16 16 C 0.03 0.82 9.01 127.69 1.15 1.97 16 17 C 0.06 1.97 5.34 85.56 0.46 2.43 16 18 C 0.44 20.45 7.51 87.66 0.66 21.11 16 19 O -0.62 -33.55 13.89 -3.07 -0.04 -33.59 16 20 N -0.57 -28.73 5.29 -306.98 -1.62 -30.36 16 21 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 22 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 23 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 24 N -0.92 -48.73 13.05 21.67 0.28 -48.45 16 25 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 29 C 0.12 2.94 5.21 86.86 0.45 3.39 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.69 6.56 -2.39 -0.02 0.68 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 0.92 6.56 -2.39 -0.02 0.91 16 39 H 0.04 1.03 5.95 -2.39 -0.01 1.02 16 40 H 0.11 1.00 8.14 -2.38 -0.02 0.99 16 41 H 0.12 0.91 8.14 -2.39 -0.02 0.90 16 42 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.11 1.34 7.88 -2.39 -0.02 1.32 16 46 H 0.06 2.46 5.88 -2.39 -0.01 2.44 16 47 H 0.07 2.14 6.86 -2.39 -0.02 2.12 16 48 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 49 H 0.12 3.18 6.86 -2.39 -0.02 3.17 16 50 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 51 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 52 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 53 H 0.06 1.68 7.82 -2.39 -0.02 1.67 16 54 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -72.45 420.86 1.40 -71.06 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.14 Total: 32.51 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 7.29 Total: 17.48 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -7.97 Total: -114.18 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -0.09 Total: -51.49 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -72.45 1.40 -71.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189270429.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.082 kcal (2) G-P(sol) polarization free energy of solvation -72.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds