Wall clock time and date at job start Tue Mar 31 2020 22:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46819 * 2 1 4 4 C 1.53003 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47360 * 305.00692 * 4 3 2 6 6 C 1.52998 * 109.46872 * 65.00192 * 4 3 2 7 7 C 1.52999 * 109.47114 * 185.00008 * 4 3 2 8 8 C 1.50698 * 109.46797 * 175.00171 * 7 4 3 9 9 O 1.21278 * 120.00407 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99941 * 179.97438 * 8 7 4 11 11 C 1.47022 * 125.64703 * 359.69637 * 10 8 7 12 12 C 1.54314 * 107.27557 * 180.96670 * 11 10 8 13 13 C 1.55155 * 102.86542 * 22.52471 * 12 11 10 14 14 H 1.09001 * 111.00579 * 82.38004 * 13 12 11 15 15 N 1.46901 * 111.03788 * 206.21723 * 13 12 11 16 16 C 1.46898 * 110.99795 * 300.53197 * 15 13 12 17 17 C 1.46904 * 110.99714 * 176.58247 * 15 13 12 18 18 C 1.50702 * 109.46682 * 189.99726 * 17 15 13 19 19 O 1.21292 * 120.00375 * 0.02562 * 18 17 15 20 20 N 1.34779 * 119.99744 * 179.97438 * 18 17 15 21 21 C 1.37106 * 119.99885 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99648 * 0.02562 * 21 20 18 23 23 C 1.38944 * 119.99762 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99952 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 120.00192 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47197 * 89.99953 * 25 23 21 27 27 H 1.48504 * 109.47421 * 209.99686 * 25 23 21 28 28 H 1.48498 * 109.47132 * 329.99751 * 25 23 21 29 29 C 1.47428 * 125.65057 * 179.97438 * 10 8 7 30 30 H 1.09004 * 109.46815 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47565 * 59.99984 * 1 2 3 32 32 H 1.09000 * 109.47351 * 299.99289 * 1 2 3 33 33 H 1.08995 * 109.47565 * 120.00016 * 2 1 3 34 34 H 1.09005 * 109.47118 * 240.00278 * 2 1 3 35 35 H 1.08997 * 109.47567 * 300.00384 * 3 2 1 36 36 H 1.09005 * 109.47048 * 60.00235 * 3 2 1 37 37 H 1.08998 * 109.47440 * 59.99972 * 6 4 3 38 38 H 1.09001 * 109.47465 * 180.02562 * 6 4 3 39 39 H 1.09004 * 109.47563 * 300.00395 * 6 4 3 40 40 H 1.09002 * 109.47394 * 294.99961 * 7 4 3 41 41 H 1.09000 * 109.46835 * 55.00351 * 7 4 3 42 42 H 1.08995 * 109.88420 * 300.50909 * 11 10 8 43 43 H 1.08998 * 109.88465 * 61.67765 * 11 10 8 44 44 H 1.09001 * 110.92721 * 264.10555 * 12 11 10 45 45 H 1.09000 * 110.74511 * 140.85384 * 12 11 10 46 46 H 1.09006 * 109.46908 * 65.78897 * 16 15 13 47 47 H 1.09005 * 109.47139 * 185.78512 * 16 15 13 48 48 H 1.08995 * 109.47345 * 305.78510 * 16 15 13 49 49 H 1.08999 * 109.47132 * 309.99590 * 17 15 13 50 50 H 1.08999 * 109.47386 * 69.99955 * 17 15 13 51 51 H 0.96994 * 120.00216 * 359.97438 * 20 18 17 52 52 H 0.96996 * 119.99860 * 179.97438 * 24 23 21 53 53 H 1.08998 * 110.36889 * 274.67564 * 29 10 8 54 54 H 1.08995 * 110.36389 * 37.00166 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8532 0.8426 6 6 4.0805 0.8329 -1.3064 7 6 4.0798 2.8797 0.1264 8 6 5.5816 2.8707 0.2505 9 8 6.1849 1.8186 0.2390 10 7 6.2546 4.0320 0.3732 11 6 5.6526 5.3731 0.3941 12 6 6.8051 6.3908 0.5260 13 6 8.0284 5.5981 -0.0055 14 1 8.0688 5.6258 -1.0944 15 7 9.2782 6.1035 0.5780 16 6 9.4732 7.5234 0.2558 17 6 10.4271 5.3011 0.1373 18 6 11.6450 5.6863 0.9370 19 8 11.5638 6.5444 1.7904 20 7 12.8243 5.0765 0.7046 21 6 13.9322 5.4265 1.4325 22 1 13.8598 6.1905 2.1923 23 6 15.1478 4.7974 1.1933 24 7 16.2098 5.1332 1.8906 25 14 15.2727 3.4754 -0.1204 26 1 15.6236 4.1012 -1.4207 27 1 16.3251 2.4986 0.2587 28 1 13.9689 2.7754 -0.2438 29 6 7.7169 4.1681 0.5029 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 0.5137 0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.7175 1.4221 -2.1485 38 1 5.1705 0.8325 -1.3059 39 1 3.7172 -0.1909 -1.3961 40 1 3.7918 3.4462 -0.7592 41 1 3.6448 3.3433 1.0118 42 1 5.1052 5.5482 -0.5320 43 1 4.9805 5.4645 1.2474 44 1 6.9540 6.6776 1.5670 45 1 6.6170 7.2692 -0.0914 46 1 8.6975 8.1159 0.7411 47 1 10.4521 7.8455 0.6111 48 1 9.4146 7.6624 -0.8236 49 1 10.2117 4.2436 0.2901 50 1 10.6142 5.4847 -0.9207 51 1 12.8890 4.3895 0.0230 52 1 17.0583 4.6938 1.7238 53 1 8.0167 4.0623 1.5455 54 1 8.2231 3.4270 -0.1155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189270430.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:49 Heat of formation + Delta-G solvation = -99.420659 kcal Electronic energy + Delta-G solvation = -29823.159319 eV Core-core repulsion = 25793.604519 eV Total energy + Delta-G solvation = -4029.554800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.34879 -40.49940 -39.21957 -37.56579 -36.72018 -35.83015 -33.76491 -33.59315 -32.06967 -30.37213 -29.43802 -28.53645 -27.43869 -26.65075 -25.13984 -23.94520 -22.71481 -21.41811 -21.20334 -20.96497 -20.23262 -19.88447 -18.25753 -17.87740 -17.49955 -16.83003 -16.65492 -16.49781 -16.07964 -15.91879 -15.67195 -15.52036 -14.97725 -14.80258 -14.71740 -14.61268 -14.36481 -14.28652 -14.16384 -13.92310 -13.68337 -13.46412 -13.17242 -13.14478 -12.84041 -12.80133 -12.61949 -12.55677 -12.44166 -12.40106 -12.29274 -12.00508 -11.87774 -11.86575 -11.77485 -11.63788 -11.47739 -11.46508 -11.25580 -10.70589 -10.38492 -10.23864 -9.65319 -9.27117 -8.42424 -6.02647 1.28994 1.32612 1.41759 1.65317 1.89721 1.94637 2.20898 2.61702 3.13684 3.20151 3.35108 3.68164 3.76044 3.80607 3.97568 4.04438 4.09319 4.21665 4.26984 4.29078 4.33375 4.35012 4.41352 4.44126 4.55265 4.56101 4.63422 4.71730 4.74140 4.74496 4.80480 4.83324 4.90351 4.95234 4.99777 5.02409 5.07859 5.17511 5.18034 5.22265 5.27414 5.30631 5.34063 5.44654 5.51953 5.56595 5.59949 5.86336 5.97588 6.17328 6.54966 6.58554 6.87357 7.18478 7.38680 7.95234 8.75075 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.002007 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.242800 B =13946.192451 C =15245.755692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.107 4.107 4 C -0.076 4.076 5 H 0.053 0.947 6 C -0.151 4.151 7 C -0.122 4.122 8 C 0.518 3.482 9 O -0.584 6.584 10 N -0.620 5.620 11 C 0.103 3.897 12 C -0.118 4.118 13 C 0.074 3.926 14 H 0.071 0.929 15 N -0.529 5.529 16 C 0.030 3.970 17 C 0.052 3.948 18 C 0.453 3.547 19 O -0.601 6.601 20 N -0.594 5.594 21 C -0.326 4.326 22 H 0.058 0.942 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.960 3.040 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.237 1.237 29 C 0.111 3.889 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.108 0.892 46 H 0.084 0.916 47 H 0.051 0.949 48 H 0.039 0.961 49 H 0.105 0.895 50 H 0.080 0.920 51 H 0.388 0.612 52 H 0.279 0.721 53 H 0.057 0.943 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.874 -4.520 -11.530 36.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.144 4.144 4 C -0.095 4.095 5 H 0.071 0.929 6 C -0.208 4.208 7 C -0.162 4.162 8 C 0.310 3.690 9 O -0.464 6.464 10 N -0.355 5.355 11 C -0.019 4.019 12 C -0.155 4.155 13 C -0.035 4.035 14 H 0.089 0.911 15 N -0.254 5.254 16 C -0.118 4.118 17 C -0.079 4.079 18 C 0.241 3.759 19 O -0.485 6.485 20 N -0.236 5.236 21 C -0.455 4.455 22 H 0.076 0.924 23 C -0.211 4.211 24 N -0.574 5.574 25 Si 0.781 3.219 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.160 1.160 29 C -0.012 4.012 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.126 0.874 46 H 0.103 0.897 47 H 0.070 0.930 48 H 0.058 0.942 49 H 0.123 0.877 50 H 0.097 0.903 51 H 0.223 0.777 52 H 0.088 0.912 53 H 0.075 0.925 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -33.498 -4.610 -10.405 35.378 hybrid contribution 1.467 -0.708 -0.873 1.848 sum -32.031 -5.317 -11.279 34.372 Atomic orbital electron populations 1.21763 0.95175 1.01741 1.02135 1.21589 0.96307 0.97106 1.01708 1.21615 0.92711 0.97043 1.03025 1.20892 0.95927 0.94250 0.98421 0.92857 1.21939 1.01036 1.00859 0.96960 1.21784 0.88405 0.99756 1.06219 1.21185 0.91488 0.81469 0.74903 1.90678 1.71589 1.31855 1.52280 1.48613 1.07194 1.07363 1.72282 1.22291 0.96213 0.79330 1.04098 1.22722 0.91472 0.98079 1.03275 1.22823 0.89721 0.93716 0.97243 0.91079 1.61508 1.00545 1.03466 1.59868 1.22402 1.03126 0.87417 0.98836 1.21825 0.88992 0.99665 0.97465 1.20771 0.84660 0.84073 0.86387 1.90518 1.85342 1.35439 1.37200 1.42070 1.08409 1.37233 1.35852 1.19005 0.87502 1.21422 1.17590 0.92373 1.26043 0.93930 1.00665 1.00500 1.69795 1.01300 1.44026 1.42244 0.85426 0.80012 0.78102 0.78397 1.17938 1.19992 1.16022 1.22083 0.81649 0.96699 1.00809 0.92884 0.92235 0.92471 0.92949 0.92135 0.90620 0.90989 0.92007 0.93829 0.92627 0.86394 0.86774 0.88304 0.89171 0.90307 0.87406 0.89698 0.93015 0.94240 0.87654 0.90262 0.77725 0.91166 0.92490 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 71.98 0.71 -0.58 16 2 C -0.13 -1.40 5.69 30.59 0.17 -1.22 16 3 C -0.11 -1.00 4.68 30.60 0.14 -0.86 16 4 C -0.08 -1.09 2.04 -10.79 -0.02 -1.11 16 5 H 0.05 1.04 7.96 -2.39 -0.02 1.02 16 6 C -0.15 -2.52 8.69 71.98 0.63 -1.89 16 7 C -0.12 -1.47 4.37 29.85 0.13 -1.34 16 8 C 0.52 11.08 7.57 87.66 0.66 11.74 16 9 O -0.58 -17.99 14.22 -3.02 -0.04 -18.03 16 10 N -0.62 -11.84 3.33 -811.78 -2.70 -14.54 16 11 C 0.10 1.10 6.48 86.73 0.56 1.66 16 12 C -0.12 -1.63 5.33 31.78 0.17 -1.46 16 13 C 0.07 1.51 2.69 46.31 0.12 1.63 16 14 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 15 N -0.53 -15.25 4.40 -893.38 -3.93 -19.18 16 16 C 0.03 0.82 8.90 127.69 1.14 1.96 16 17 C 0.05 1.65 5.34 85.56 0.46 2.11 16 18 C 0.45 20.74 7.42 87.66 0.65 21.39 16 19 O -0.60 -33.01 13.97 -3.07 -0.04 -33.06 16 20 N -0.59 -28.64 5.09 -306.98 -1.56 -30.21 16 21 C -0.33 -19.32 10.16 84.04 0.85 -18.47 16 22 H 0.06 4.07 7.39 -2.91 -0.02 4.05 16 23 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 24 N -0.93 -56.80 13.96 21.66 0.30 -56.50 16 25 Si 0.96 39.87 27.74 68.60 1.90 41.78 16 26 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H -0.24 -8.52 6.52 99.48 0.65 -7.87 16 29 C 0.11 2.66 5.46 86.86 0.47 3.13 16 30 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.70 6.57 -2.38 -0.02 0.68 16 35 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.04 1.01 5.95 -2.39 -0.01 1.00 16 39 H 0.05 0.88 6.57 -2.38 -0.02 0.86 16 40 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 45 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.08 1.96 7.37 -2.38 -0.02 1.94 16 47 H 0.05 1.92 5.79 -2.38 -0.01 1.91 16 48 H 0.04 0.89 8.12 -2.39 -0.02 0.87 16 49 H 0.11 3.06 6.79 -2.39 -0.02 3.05 16 50 H 0.08 2.10 8.12 -2.39 -0.02 2.08 16 51 H 0.39 15.77 5.76 -92.71 -0.53 15.24 16 52 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 53 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 54 H 0.06 1.65 7.68 -2.39 -0.02 1.64 16 Total: -1.00 -81.64 418.16 1.52 -80.12 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.28 Total: 33.18 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 7.32 Total: 16.44 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -7.89 Total: -120.43 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -0.09 Total: -51.09 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 1.90 Total: 41.78 kcal Total: -81.64 1.52 -80.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189270430.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.301 kcal (2) G-P(sol) polarization free energy of solvation -81.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds