Wall clock time and date at job start Tue Mar 31 2020 22:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47613 * 2 1 4 4 C 1.52998 * 109.47613 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46977 * 305.00190 * 4 3 2 6 6 C 1.53004 * 109.46898 * 64.99587 * 4 3 2 7 7 C 1.53001 * 109.47225 * 185.28623 * 6 4 3 8 8 C 1.50695 * 109.47555 * 185.00163 * 4 3 2 9 9 O 1.21286 * 119.99926 * 263.20166 * 8 4 3 10 10 N 1.34771 * 120.00468 * 83.20053 * 8 4 3 11 11 C 1.47620 * 118.74521 * 354.67146 * 10 8 4 12 12 C 1.54167 * 111.09477 * 138.19402 * 11 10 8 13 13 C 1.51269 * 109.77943 * 320.24389 * 12 11 10 14 14 N 1.46199 * 109.10446 * 92.30737 * 13 12 11 15 15 C 1.46897 * 111.00209 * 144.77415 * 14 13 12 16 16 C 1.50707 * 109.46926 * 197.08356 * 15 14 13 17 17 O 1.21283 * 119.99917 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99704 * 180.02562 * 16 15 14 19 19 C 1.37098 * 119.99770 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00127 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99830 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00143 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99812 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47421 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46985 * 120.00227 * 23 21 19 26 26 H 1.48503 * 109.47137 * 239.99967 * 23 21 19 27 27 C 1.41441 * 116.34490 * 272.97976 * 14 13 12 28 28 C 1.44880 * 118.75143 * 174.93144 * 10 8 4 29 29 H 1.08993 * 109.47629 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46938 * 59.99403 * 1 2 3 31 31 H 1.09002 * 109.46998 * 300.00119 * 1 2 3 32 32 H 1.09008 * 109.46867 * 120.00409 * 2 1 3 33 33 H 1.09002 * 109.46998 * 239.99881 * 2 1 3 34 34 H 1.08999 * 109.47456 * 300.00279 * 3 2 1 35 35 H 1.09002 * 109.47035 * 59.99904 * 3 2 1 36 36 H 1.08997 * 109.47304 * 305.28837 * 6 4 3 37 37 H 1.09004 * 109.46659 * 65.29070 * 6 4 3 38 38 H 1.09006 * 109.47208 * 294.40895 * 7 6 4 39 39 H 1.09004 * 109.47197 * 54.40202 * 7 6 4 40 40 H 1.09000 * 109.47500 * 174.40469 * 7 6 4 41 41 H 1.08997 * 109.11083 * 258.78521 * 11 10 8 42 42 H 1.09003 * 109.11113 * 17.84138 * 11 10 8 43 43 H 1.09001 * 109.45430 * 200.09713 * 12 11 10 44 44 H 1.09003 * 109.29123 * 80.28879 * 12 11 10 45 45 H 1.08995 * 109.53271 * 332.42235 * 13 12 11 46 46 H 1.09004 * 109.59286 * 212.22557 * 13 12 11 47 47 H 1.09002 * 109.46896 * 317.07970 * 15 14 13 48 48 H 1.08994 * 109.47318 * 77.08405 * 15 14 13 49 49 H 0.96998 * 119.99704 * 359.97438 * 18 16 15 50 50 H 0.96998 * 119.99821 * 180.02562 * 22 21 19 51 51 H 1.08999 * 109.38341 * 303.31931 * 27 14 13 52 52 H 1.08999 * 109.38811 * 183.63797 * 27 14 13 53 53 H 1.09004 * 109.43493 * 29.79882 * 28 10 8 54 54 H 1.09002 * 109.43626 * 149.66125 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 6 4.0795 0.8328 -1.3083 7 6 5.6037 0.7115 -1.2547 8 6 4.0725 2.8577 0.1232 9 8 4.3915 3.4770 -0.8696 10 7 4.1675 3.4353 1.3371 11 6 3.6612 2.7018 2.5139 12 6 4.6218 2.8432 3.7114 13 6 6.0540 2.7671 3.2305 14 7 6.5395 4.1188 2.9573 15 6 7.9619 4.2469 3.3012 16 6 8.3224 5.7060 3.4122 17 8 7.4777 6.5554 3.2228 18 7 9.5838 6.0668 3.7208 19 6 9.9119 7.3942 3.8212 20 1 9.1596 8.1506 3.6534 21 6 11.2122 7.7662 4.1399 22 7 12.1273 6.8457 4.3456 23 14 11.6594 9.5747 4.2760 24 1 10.4586 10.4037 4.0008 25 1 12.1541 9.8605 5.6468 26 1 12.7212 9.8977 3.2893 27 6 6.2832 4.6281 1.6629 28 6 4.7573 4.7549 1.4368 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 3.6408 -0.1558 -1.4435 37 1 3.7952 1.4738 -2.1429 38 1 6.0465 1.7069 -1.2195 39 1 5.8927 0.1537 -0.3639 40 1 5.9580 0.1874 -2.1424 41 1 2.6832 3.0977 2.7876 42 1 3.5596 1.6466 2.2602 43 1 4.4350 2.0395 4.4236 44 1 4.4528 3.8043 4.1972 45 1 6.1011 2.1718 2.3187 46 1 6.6738 2.3058 3.9995 47 1 8.1512 3.7524 4.2540 48 1 8.5671 3.7812 2.5236 49 1 10.2594 5.3874 3.8719 50 1 13.0349 7.1055 4.5684 51 1 6.7043 3.9525 0.9183 52 1 6.7466 5.6095 1.5619 53 1 4.5717 5.3057 0.5147 54 1 4.3097 5.2899 2.2744 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197598130.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:32 Heat of formation + Delta-G solvation = -97.556190 kcal Electronic energy + Delta-G solvation = -31300.631939 eV Core-core repulsion = 27271.157988 eV Total energy + Delta-G solvation = -4029.473950 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.76211 -40.46553 -38.91011 -37.22355 -36.37162 -35.73650 -33.92917 -33.47676 -33.27387 -31.08656 -29.76389 -28.08492 -26.99983 -26.06002 -25.24036 -23.95719 -22.78373 -21.71114 -21.52716 -21.02875 -19.92079 -19.51182 -18.46498 -17.90105 -17.29414 -16.83173 -16.64930 -16.26985 -16.22708 -15.95484 -15.65618 -15.59105 -15.53991 -14.96055 -14.73520 -14.50001 -14.27179 -14.10097 -14.06078 -13.72500 -13.61065 -13.41001 -13.09061 -12.99719 -12.86336 -12.74568 -12.59648 -12.55747 -12.43489 -12.35514 -12.21009 -12.12917 -11.99284 -11.90681 -11.76692 -11.68121 -11.51920 -11.46531 -11.24837 -10.57318 -10.28408 -10.00084 -9.63493 -9.08923 -8.46816 -5.95069 1.35389 1.40454 1.54641 1.62972 2.03610 2.06304 2.27795 2.75467 3.19884 3.36862 3.47378 3.74449 3.84641 3.89195 3.99444 4.08087 4.12992 4.21565 4.24900 4.28586 4.34363 4.38688 4.45528 4.49755 4.50099 4.55976 4.57895 4.63121 4.71397 4.75557 4.84661 4.86518 4.88913 4.90727 4.97953 5.01184 5.10044 5.11549 5.14965 5.28526 5.32112 5.33439 5.36709 5.41113 5.44354 5.54034 5.65241 5.92217 6.14232 6.36613 6.55103 6.60880 7.13287 7.21471 7.56919 8.12732 8.70796 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023749 B = 0.002268 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.701277 B =12343.187351 C =12556.148177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.105 4.105 4 C -0.100 4.100 5 H 0.118 0.882 6 C -0.105 4.105 7 C -0.153 4.153 8 C 0.506 3.494 9 O -0.587 6.587 10 N -0.604 5.604 11 C 0.101 3.899 12 C -0.127 4.127 13 C 0.070 3.930 14 N -0.549 5.549 15 C 0.065 3.935 16 C 0.440 3.560 17 O -0.612 6.612 18 N -0.576 5.576 19 C -0.329 4.329 20 H 0.078 0.922 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.274 1.274 25 H -0.269 1.269 26 H -0.272 1.272 27 C 0.077 3.923 28 C 0.132 3.868 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.050 0.950 38 H 0.022 0.978 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.064 0.936 45 H 0.037 0.963 46 H 0.090 0.910 47 H 0.116 0.884 48 H 0.056 0.944 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.000 1.000 52 H 0.065 0.935 53 H 0.065 0.935 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.728 -20.774 -3.565 28.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.143 4.143 4 C -0.121 4.121 5 H 0.135 0.865 6 C -0.143 4.143 7 C -0.211 4.211 8 C 0.296 3.704 9 O -0.467 6.467 10 N -0.336 5.336 11 C -0.020 4.020 12 C -0.166 4.166 13 C -0.056 4.056 14 N -0.274 5.274 15 C -0.065 4.065 16 C 0.227 3.773 17 O -0.498 6.498 18 N -0.213 5.213 19 C -0.459 4.459 20 H 0.096 0.904 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.054 4.054 28 C 0.008 3.992 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.083 0.917 45 H 0.055 0.945 46 H 0.108 0.892 47 H 0.134 0.866 48 H 0.073 0.927 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.018 0.982 52 H 0.084 0.916 53 H 0.083 0.917 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.192 -19.595 -3.856 28.400 hybrid contribution 1.603 0.810 -0.589 1.890 sum -18.589 -18.785 -4.446 26.799 Atomic orbital electron populations 1.21778 0.95548 1.02110 1.01731 1.21563 0.96017 0.94738 1.03294 1.21557 0.90996 0.99141 1.02600 1.21549 0.98126 0.91030 1.01430 0.86472 1.21456 0.95585 1.01517 0.95721 1.21790 0.96406 1.00400 1.02474 1.21477 0.76705 0.89908 0.82330 1.90663 1.51647 1.66188 1.38240 1.48050 1.59948 1.17527 1.08074 1.22491 0.97344 0.97864 0.84310 1.21955 0.92830 1.04269 0.97499 1.21704 0.97435 0.86130 1.00336 1.57809 1.15653 1.25842 1.28067 1.21729 0.89345 0.92667 1.02776 1.20861 0.82356 0.91942 0.82134 1.90458 1.49572 1.53923 1.55842 1.41956 1.09384 1.07831 1.62159 1.19672 0.95588 0.84197 1.46420 0.90388 1.26029 0.94908 1.04104 0.96402 1.69678 1.03710 1.34855 1.47984 0.84882 0.78055 0.77148 0.78318 1.19878 1.19464 1.19782 1.21468 0.97007 0.99325 0.87573 1.21210 0.91653 0.84648 1.01699 0.91883 0.93467 0.92463 0.90156 0.91272 0.92950 0.90688 0.88271 0.93164 0.95825 0.91618 0.91830 0.89996 0.87104 0.86570 0.91720 0.94456 0.89200 0.86575 0.92651 0.77106 0.91366 0.98244 0.91633 0.91703 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.53 16 2 C -0.12 -0.95 5.70 30.59 0.17 -0.77 16 3 C -0.10 -1.31 4.47 30.59 0.14 -1.17 16 4 C -0.10 -1.60 1.34 -11.54 -0.02 -1.61 16 5 H 0.12 1.29 6.30 -2.39 -0.02 1.28 16 6 C -0.11 -1.80 4.95 30.60 0.15 -1.65 16 7 C -0.15 -3.00 9.61 71.98 0.69 -2.31 16 8 C 0.51 12.91 6.11 87.66 0.54 13.44 16 9 O -0.59 -20.77 14.56 -3.05 -0.04 -20.81 16 10 N -0.60 -14.34 2.17 -817.17 -1.78 -16.12 16 11 C 0.10 1.46 5.23 86.56 0.45 1.92 16 12 C -0.13 -2.05 5.79 30.42 0.18 -1.87 16 13 C 0.07 1.53 5.32 85.87 0.46 1.99 16 14 N -0.55 -17.65 3.60 -916.23 -3.30 -20.95 16 15 C 0.07 2.30 5.44 85.56 0.47 2.77 16 16 C 0.44 21.23 7.37 87.66 0.65 21.88 16 17 O -0.61 -33.99 13.96 -3.04 -0.04 -34.03 16 18 N -0.58 -30.02 5.29 -306.98 -1.62 -31.64 16 19 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.81 5.50 84.93 0.47 -0.35 16 22 N -0.92 -50.34 13.05 21.66 0.28 -50.06 16 23 Si 0.99 43.75 29.55 68.60 2.03 45.78 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 27 C 0.08 2.77 5.01 87.90 0.44 3.21 16 28 C 0.13 4.14 5.55 87.29 0.48 4.63 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.07 0.54 6.45 -2.39 -0.02 0.53 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.84 7.24 -2.39 -0.02 0.82 16 36 H 0.10 1.12 6.33 -2.39 -0.02 1.10 16 37 H 0.05 1.11 7.68 -2.39 -0.02 1.09 16 38 H 0.02 0.63 6.97 -2.38 -0.02 0.61 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.11 0.97 5.21 -2.39 -0.01 0.96 16 43 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 1.38 7.98 -2.39 -0.02 1.36 16 45 H 0.04 0.82 7.33 -2.39 -0.02 0.80 16 46 H 0.09 1.64 7.36 -2.39 -0.02 1.63 16 47 H 0.12 3.43 7.57 -2.39 -0.02 3.41 16 48 H 0.06 1.86 8.11 -2.39 -0.02 1.84 16 49 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 50 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 51 H 0.00 -0.01 8.12 -2.39 -0.02 -0.03 16 52 H 0.07 2.96 5.61 -2.39 -0.01 2.95 16 53 H 0.06 2.27 7.22 -2.38 -0.02 2.26 16 54 H 0.08 2.61 8.11 -2.39 -0.02 2.59 16 Total: -1.00 -75.07 410.75 2.46 -72.60 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.15 Total: 33.80 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: 6.79 Total: 21.42 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -6.42 Total: -118.76 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -0.09 Total: -54.84 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -75.07 2.46 -72.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197598130.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.952 kcal (2) G-P(sol) polarization free energy of solvation -75.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds