Wall clock time and date at job start Tue Mar 31 2020 23:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47165 * 2 1 4 4 C 1.53005 * 109.46944 * 119.99497 * 2 1 3 5 5 H 1.09002 * 109.47415 * 59.87750 * 4 2 1 6 6 C 1.50702 * 109.47370 * 299.87293 * 4 2 1 7 7 O 1.21281 * 120.00087 * 268.36907 * 6 4 2 8 8 N 1.34769 * 119.99643 * 88.36791 * 6 4 2 9 9 C 1.46505 * 119.99866 * 185.00536 * 8 6 4 10 10 H 1.08997 * 110.64268 * 36.68676 * 9 8 6 11 11 C 1.54323 * 110.71795 * 273.54639 * 9 8 6 12 12 N 1.47024 * 107.26812 * 219.44336 * 11 9 8 13 13 C 1.36939 * 125.64425 * 178.90751 * 12 11 9 14 14 H 1.07996 * 120.00276 * 359.97438 * 13 12 11 15 15 C 1.38819 * 119.99918 * 179.97438 * 13 12 11 16 16 N 1.31618 * 119.99605 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00130 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46730 * 59.99902 * 17 15 13 19 19 H 1.48500 * 109.47086 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47224 * 300.00225 * 17 15 13 21 21 C 1.47416 * 108.70582 * 358.94108 * 12 11 9 22 22 C 1.54908 * 104.83125 * 24.12722 * 21 12 11 23 23 H 1.09000 * 111.00289 * 81.06737 * 22 21 12 24 24 O 1.42906 * 111.00332 * 204.91656 * 22 21 12 25 25 N 1.46905 * 109.46907 * 179.87497 * 4 2 1 26 26 C 1.46848 * 110.99929 * 180.02562 * 25 4 2 27 27 C 1.53032 * 109.52416 * 185.84222 * 26 25 4 28 28 C 1.53130 * 109.27606 * 300.81401 * 27 26 25 29 29 C 1.53125 * 109.20857 * 57.62277 * 28 27 26 30 30 C 1.46845 * 110.99989 * 304.20966 * 25 4 2 31 31 H 1.09006 * 109.47092 * 185.52835 * 1 2 3 32 32 H 1.09001 * 109.47288 * 305.52251 * 1 2 3 33 33 H 1.08993 * 109.47422 * 65.52750 * 1 2 3 34 34 H 1.08998 * 109.47239 * 239.99397 * 2 1 3 35 35 H 1.09002 * 109.47537 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.47149 * 299.99655 * 3 2 1 37 37 H 1.08998 * 109.47534 * 59.99577 * 3 2 1 38 38 H 0.96998 * 120.00559 * 5.00282 * 8 6 4 39 39 H 1.09004 * 109.88508 * 338.85696 * 11 9 8 40 40 H 1.09002 * 109.88340 * 99.87063 * 11 9 8 41 41 H 0.96998 * 119.99852 * 180.02562 * 16 15 13 42 42 H 1.08994 * 110.36925 * 142.97342 * 21 12 11 43 43 H 1.09008 * 110.36668 * 265.18387 * 21 12 11 44 44 H 0.96701 * 114.00154 * 292.19675 * 24 22 21 45 45 H 1.08994 * 109.46826 * 65.81601 * 26 25 4 46 46 H 1.09008 * 109.45810 * 305.85022 * 26 25 4 47 47 H 1.09002 * 109.50452 * 180.87952 * 27 26 25 48 48 H 1.09004 * 109.50871 * 60.74994 * 27 26 25 49 49 H 1.08992 * 109.52447 * 177.56009 * 28 27 26 50 50 H 1.08994 * 109.51955 * 297.68854 * 28 27 26 51 51 H 1.08994 * 109.50023 * 62.32331 * 29 28 27 52 52 H 1.09002 * 109.49501 * 182.43609 * 29 28 27 53 53 H 1.09003 * 109.46438 * 294.18141 * 30 25 4 54 54 H 1.09006 * 109.46544 * 54.14596 * 30 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6748 -1.7482 1.2506 6 6 1.5402 -0.0089 2.4798 7 8 2.2115 0.8624 2.9908 8 7 0.3473 -0.3401 3.0122 9 6 -0.1888 0.4247 4.1411 10 1 0.0555 1.4820 4.0394 11 6 0.3420 -0.1322 5.4789 12 7 -0.7698 -0.0918 6.4402 13 6 -0.7167 -0.5194 7.7400 14 1 0.2003 -0.9294 8.1366 15 6 -1.8417 -0.4257 8.5479 16 7 -2.9591 0.0745 8.0647 17 14 -1.7696 -1.0096 10.3209 18 1 -0.7355 -0.2368 11.0548 19 1 -3.0917 -0.8021 10.9645 20 1 -1.4241 -2.4535 10.3529 21 6 -1.9511 0.4845 5.7728 22 6 -1.7219 0.2208 4.2636 23 1 -2.0031 -0.7982 3.9979 24 8 -2.4304 1.1703 3.4644 25 7 3.5090 -0.7238 1.2478 26 6 4.0352 -1.4098 2.4348 27 6 5.5584 -1.2670 2.4748 28 6 6.1567 -1.8756 1.2034 29 6 5.5561 -1.1777 -0.0201 30 6 4.0329 -1.3222 0.0134 31 1 -0.3633 -1.0229 0.0990 32 1 -0.3634 0.5971 0.8364 33 1 -0.3634 0.4257 -0.9353 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9564 0.8899 38 1 -0.1565 -1.0847 2.6481 39 1 0.6790 -1.1601 5.3450 40 1 1.1666 0.4846 5.8361 41 1 -3.7451 0.1402 8.6292 42 1 -2.8592 -0.0143 6.1115 43 1 -2.0122 1.5553 5.9675 44 1 -3.3923 1.0820 3.5088 45 1 3.7705 -2.4661 2.3911 46 1 3.6051 -0.9645 3.3321 47 1 5.9501 -1.7895 3.3475 48 1 5.8236 -0.2112 2.5324 49 1 7.2378 -1.7375 1.2074 50 1 5.9256 -2.9401 1.1656 51 1 5.8213 -0.1207 -0.0027 52 1 5.9463 -1.6366 -0.9286 53 1 3.7681 -2.3791 -0.0187 54 1 3.6011 -0.8135 -0.8486 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199095352.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:45 Heat of formation + Delta-G solvation = -81.178159 kcal Electronic energy + Delta-G solvation = -32113.198602 eV Core-core repulsion = 28084.434856 eV Total energy + Delta-G solvation = -4028.763746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.69680 -40.06128 -38.92068 -36.74667 -36.64912 -35.53617 -33.61654 -33.38293 -31.72840 -30.37557 -29.04930 -27.92206 -27.77521 -26.27846 -24.32978 -24.11377 -22.60877 -22.26523 -21.57904 -20.76969 -20.28385 -19.07043 -18.49246 -17.88018 -17.62298 -17.15066 -16.75748 -16.29232 -15.86767 -15.54876 -15.50580 -15.24663 -14.97500 -14.86197 -14.75930 -14.59704 -14.33195 -14.04996 -13.95837 -13.77864 -13.60520 -13.33804 -13.22786 -13.13135 -13.02861 -12.90504 -12.74247 -12.71595 -12.14598 -12.11822 -12.09320 -11.94576 -11.88020 -11.80936 -11.58311 -11.45160 -11.35815 -11.15023 -11.03058 -10.78926 -10.52721 -10.11288 -9.22736 -8.99705 -7.83927 -5.30457 1.45634 1.49002 1.55308 1.65805 1.99271 2.45349 2.87101 3.06781 3.27269 3.55079 3.62449 3.82748 3.84140 3.89504 3.95988 4.03338 4.04983 4.09014 4.19568 4.26989 4.31760 4.39284 4.40436 4.44997 4.59284 4.60711 4.68417 4.69795 4.81347 4.83174 4.85777 4.93721 4.95511 5.01535 5.04434 5.07849 5.10214 5.20376 5.24093 5.31473 5.35525 5.41376 5.43916 5.46703 5.50313 5.53894 5.65710 5.98800 6.17453 6.19133 6.59724 6.86247 7.02911 7.31058 7.66700 8.29165 9.17554 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014628 B = 0.003092 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.683696 B = 9054.835679 C =10591.466229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.076 4.076 3 C -0.135 4.135 4 C 0.079 3.921 5 H 0.076 0.924 6 C 0.521 3.479 7 O -0.559 6.559 8 N -0.706 5.706 9 C 0.163 3.837 10 H 0.070 0.930 11 C 0.135 3.865 12 N -0.618 5.618 13 C -0.248 4.248 14 H 0.078 0.922 15 C -0.059 4.059 16 N -0.945 5.945 17 Si 0.984 3.016 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.273 1.273 21 C 0.134 3.866 22 C 0.095 3.905 23 H 0.087 0.913 24 O -0.565 6.565 25 N -0.526 5.526 26 C 0.055 3.945 27 C -0.112 4.112 28 C -0.116 4.116 29 C -0.113 4.113 30 C 0.051 3.949 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.023 0.977 38 H 0.411 0.589 39 H 0.035 0.965 40 H 0.009 0.991 41 H 0.251 0.749 42 H 0.091 0.909 43 H -0.010 1.010 44 H 0.397 0.603 45 H 0.038 0.962 46 H 0.045 0.955 47 H 0.068 0.932 48 H 0.054 0.946 49 H 0.072 0.928 50 H 0.065 0.935 51 H 0.059 0.941 52 H 0.088 0.912 53 H 0.043 0.957 54 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.944 -6.810 -22.466 25.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.095 4.095 3 C -0.192 4.192 4 C -0.032 4.032 5 H 0.094 0.906 6 C 0.308 3.692 7 O -0.436 6.436 8 N -0.359 5.359 9 C 0.057 3.943 10 H 0.088 0.912 11 C 0.008 3.992 12 N -0.346 5.346 13 C -0.377 4.377 14 H 0.096 0.904 15 C -0.252 4.252 16 N -0.594 5.594 17 Si 0.811 3.189 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.199 1.199 21 C 0.008 3.992 22 C 0.034 3.966 23 H 0.105 0.895 24 O -0.373 6.373 25 N -0.252 5.252 26 C -0.073 4.073 27 C -0.150 4.150 28 C -0.154 4.154 29 C -0.151 4.151 30 C -0.076 4.076 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.248 0.752 39 H 0.053 0.947 40 H 0.027 0.973 41 H 0.061 0.939 42 H 0.109 0.891 43 H 0.008 0.992 44 H 0.247 0.753 45 H 0.056 0.944 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.091 0.909 50 H 0.084 0.916 51 H 0.078 0.922 52 H 0.107 0.893 53 H 0.061 0.939 54 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.062 -5.504 -22.073 25.296 hybrid contribution -1.143 -0.976 1.739 2.299 sum 9.919 -6.480 -20.334 23.534 Atomic orbital electron populations 1.21970 0.93781 1.02838 1.02664 1.21168 0.96297 0.96536 0.95521 1.21685 1.01681 0.95421 1.00442 1.21718 0.89550 0.98774 0.93185 0.90637 1.20950 0.80262 0.83149 0.84874 1.90696 1.56588 1.33459 1.62854 1.45902 1.21330 1.35249 1.33369 1.21423 0.92210 0.95499 0.85216 0.91173 1.21630 0.90776 0.97761 0.89030 1.44535 1.08176 1.73098 1.08784 1.19400 0.97361 1.34281 0.86633 0.90367 1.25629 0.95521 1.01417 1.02633 1.69949 1.01892 1.51500 1.36083 0.85085 0.76522 0.78330 0.78959 1.20896 1.21452 1.19888 1.22370 0.93044 0.95163 0.88644 1.23200 0.90152 0.92406 0.90816 0.89539 1.86390 1.24483 1.57944 1.68465 1.61614 1.04677 1.55770 1.03113 1.22065 0.96766 0.95692 0.92800 1.21516 0.93385 1.01174 0.98961 1.21567 1.00299 0.99628 0.93897 1.21582 0.93808 1.01187 0.98503 1.22314 0.96168 0.97530 0.91550 0.90820 0.94037 0.90691 0.87294 0.92117 0.91728 0.95796 0.75192 0.94660 0.97326 0.93906 0.89107 0.99246 0.75296 0.94397 0.93627 0.91347 0.92754 0.90934 0.91579 0.92178 0.89312 0.93926 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.55 71.98 0.62 -1.97 16 2 C -0.08 -1.36 2.26 -10.79 -0.02 -1.38 16 3 C -0.13 -3.03 8.69 71.98 0.63 -2.41 16 4 C 0.08 1.73 1.70 44.17 0.08 1.80 16 5 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 6 C 0.52 15.91 4.19 87.66 0.37 16.27 16 7 O -0.56 -22.35 14.56 -3.03 -0.04 -22.39 16 8 N -0.71 -20.82 4.10 -436.93 -1.79 -22.61 16 9 C 0.16 6.24 2.94 46.18 0.14 6.37 16 10 H 0.07 3.10 7.77 -2.39 -0.02 3.08 16 11 C 0.13 6.12 6.99 86.73 0.61 6.73 16 12 N -0.62 -32.68 3.39 -691.99 -2.35 -35.03 16 13 C -0.25 -14.15 10.27 84.03 0.86 -13.28 16 14 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 15 C -0.06 -3.32 5.49 84.86 0.47 -2.86 16 16 N -0.95 -54.97 10.09 21.65 0.22 -54.75 16 17 Si 0.98 45.34 29.55 68.60 2.03 47.37 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 C 0.13 6.53 5.62 86.86 0.49 7.02 16 22 C 0.09 3.47 4.04 31.98 0.13 3.60 16 23 H 0.09 2.77 8.00 -2.39 -0.02 2.76 16 24 O -0.57 -18.27 13.47 -148.98 -2.01 -20.28 16 25 N -0.53 -11.64 3.49 -875.46 -3.05 -14.69 16 26 C 0.05 1.33 5.16 86.32 0.45 1.77 16 27 C -0.11 -2.35 6.10 30.65 0.19 -2.16 16 28 C -0.12 -1.75 6.00 30.68 0.18 -1.56 16 29 C -0.11 -1.57 6.10 30.65 0.19 -1.38 16 30 C 0.05 0.77 5.13 86.33 0.44 1.22 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.04 0.94 6.85 -2.39 -0.02 0.92 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.11 1.36 6.21 -2.39 -0.01 1.34 16 35 H 0.06 1.44 7.61 -2.39 -0.02 1.42 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.02 0.70 6.70 -2.39 -0.02 0.69 16 38 H 0.41 9.48 8.44 -92.71 -0.78 8.70 16 39 H 0.04 1.54 8.03 -2.39 -0.02 1.52 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 42 H 0.09 4.83 5.88 -2.39 -0.01 4.82 16 43 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 44 H 0.40 9.41 9.12 -74.06 -0.68 8.73 16 45 H 0.04 0.82 8.14 -2.39 -0.02 0.81 16 46 H 0.05 1.44 6.28 -2.38 -0.01 1.43 16 47 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 49 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 53 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 54 H 0.09 1.17 5.90 -2.38 -0.01 1.16 16 Total: -1.00 -72.69 406.09 -1.77 -74.46 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -0.57 Total: 30.16 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 5.79 Total: 17.77 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -6.97 Total: -127.09 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -2.05 Total: -42.67 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -72.69 -1.77 -74.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199095352.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.715 kcal (2) G-P(sol) polarization free energy of solvation -72.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds