Wall clock time and date at job start Tue Mar 31 2020 22:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 C 1.52996 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47462 * 304.99281 * 4 3 2 6 6 C 1.52996 * 109.47643 * 64.99974 * 4 3 2 7 7 C 1.50708 * 109.47029 * 185.00260 * 4 3 2 8 8 O 1.21278 * 119.99840 * 344.67285 * 7 4 3 9 9 N 1.34779 * 120.00297 * 164.68098 * 7 4 3 10 10 C 1.46923 * 120.62849 * 354.71717 * 9 7 4 11 11 C 1.53188 * 108.89417 * 233.51709 * 10 9 7 12 12 C 1.53073 * 109.29356 * 305.57806 * 11 10 9 13 13 C 1.53002 * 109.45360 * 181.24220 * 12 11 10 14 14 N 1.46896 * 109.47061 * 64.79202 * 13 12 11 15 15 C 1.46900 * 110.99941 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47203 * 179.97438 * 15 14 13 17 17 O 1.21292 * 119.99680 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00180 * 179.97438 * 16 15 14 19 19 C 1.37089 * 119.99988 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00578 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00040 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99936 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00257 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46991 * 90.00088 * 23 21 19 25 25 H 1.48494 * 109.47238 * 210.00396 * 23 21 19 26 26 H 1.48501 * 109.46937 * 330.00529 * 23 21 19 27 27 C 1.53047 * 109.65894 * 61.15237 * 12 11 10 28 28 C 1.46925 * 120.63086 * 174.69411 * 9 7 4 29 29 H 1.09003 * 109.47191 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47418 * 299.99810 * 1 2 3 31 31 H 1.09004 * 109.46996 * 60.00506 * 1 2 3 32 32 H 1.09004 * 109.47198 * 239.99785 * 2 1 3 33 33 H 1.08999 * 109.47249 * 119.99896 * 2 1 3 34 34 H 1.09004 * 109.47301 * 59.99848 * 3 2 1 35 35 H 1.08999 * 109.47014 * 300.00040 * 3 2 1 36 36 H 1.08998 * 109.46778 * 293.59578 * 6 4 3 37 37 H 1.08996 * 109.47047 * 53.59210 * 6 4 3 38 38 H 1.08997 * 109.47301 * 173.59441 * 6 4 3 39 39 H 1.09002 * 109.58859 * 353.37733 * 10 9 7 40 40 H 1.09000 * 109.58788 * 113.65760 * 10 9 7 41 41 H 1.09002 * 109.49722 * 65.38679 * 11 10 9 42 42 H 1.09002 * 109.50226 * 185.48510 * 11 10 9 43 43 H 1.09000 * 109.34938 * 301.12720 * 12 11 10 44 44 H 1.09008 * 109.47105 * 184.79174 * 13 12 11 45 45 H 1.08997 * 109.46951 * 304.78463 * 13 12 11 46 46 H 1.00891 * 111.00320 * 56.04375 * 14 13 12 47 47 H 1.08998 * 109.46953 * 299.99372 * 15 14 13 48 48 H 1.09002 * 109.47362 * 59.99646 * 15 14 13 49 49 H 0.96998 * 119.99638 * 0.02562 * 18 16 15 50 50 H 0.96993 * 120.00152 * 179.97438 * 22 21 19 51 51 H 1.08994 * 109.50020 * 178.74609 * 27 12 11 52 52 H 1.09002 * 109.52194 * 58.66571 * 27 12 11 53 53 H 1.08996 * 109.58346 * 246.20228 * 28 9 7 54 54 H 1.08994 * 109.58489 * 6.48279 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9329 0.8533 0.8428 6 6 4.0806 0.8327 -1.3063 7 6 4.0722 2.8580 0.1245 8 8 3.3193 3.7881 -0.0732 9 7 5.3580 3.0904 0.4549 10 6 6.2521 1.9798 0.8098 11 6 6.8916 2.2733 2.1706 12 6 7.5735 3.6429 2.1241 13 6 8.2401 3.9262 3.4718 14 7 9.3204 2.9567 3.6973 15 6 9.9842 3.1982 4.9852 16 6 11.0836 2.1863 5.1813 17 8 11.2931 1.3462 4.3319 18 7 11.8340 2.2147 6.3005 19 6 12.8337 1.2938 6.4791 20 1 13.0197 0.5452 5.7232 21 6 13.6077 1.3235 7.6328 22 7 13.3810 2.2341 8.5528 23 14 14.9694 0.0683 7.8765 24 1 16.2367 0.5966 7.3108 25 1 15.1465 -0.1946 9.3272 26 1 14.6076 -1.1952 7.1850 27 6 6.5329 4.7265 1.8321 28 6 5.8924 4.4590 0.4666 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.8139 -0.2235 -1.3430 37 1 3.6270 1.3515 -2.1508 38 1 5.1645 0.9357 -1.3562 39 1 5.6798 1.0539 0.8671 40 1 7.0309 1.8818 0.0536 41 1 6.1208 2.2787 2.9412 42 1 7.6297 1.5044 2.3991 43 1 8.3290 3.6438 1.3383 44 1 8.6524 4.9353 3.4683 45 1 7.5011 3.8386 4.2682 46 1 9.9853 2.9733 2.9387 47 1 10.4086 4.2022 4.9926 48 1 9.2571 3.1052 5.7919 49 1 11.6661 2.8864 6.9799 50 1 13.9210 2.2546 9.3583 51 1 7.0174 5.7028 1.8217 52 1 5.7637 4.7104 2.6043 53 1 6.6433 4.5646 -0.3164 54 1 5.0831 5.1686 0.2948 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204826739.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:11 Heat of formation + Delta-G solvation = -122.917572 kcal Electronic energy + Delta-G solvation = -29497.141324 eV Core-core repulsion = 25466.567622 eV Total energy + Delta-G solvation = -4030.573702 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.46368 -40.15813 -39.05614 -36.96760 -36.68348 -35.84662 -34.04478 -33.24663 -32.81869 -31.79438 -29.34090 -27.55955 -27.34103 -25.84694 -24.70224 -24.19800 -23.02615 -21.94132 -21.26122 -20.85849 -19.91344 -19.70771 -18.24121 -17.74066 -17.00520 -16.87884 -16.57239 -16.47105 -16.01924 -15.94244 -15.50723 -15.36346 -15.29206 -15.03294 -14.84534 -14.64322 -14.27470 -14.14779 -13.92647 -13.70855 -13.48189 -13.37532 -13.22354 -13.13140 -13.07182 -12.91623 -12.78027 -12.64326 -12.40786 -12.23116 -12.13359 -12.11609 -11.85373 -11.75272 -11.71151 -11.50257 -11.47563 -11.40781 -11.35471 -10.60639 -10.32431 -10.00398 -9.64003 -9.27117 -8.45765 -5.94487 1.38919 1.42809 1.55507 1.60623 2.01949 2.06845 2.29971 2.94132 3.21734 3.46419 3.54813 3.76432 3.77781 3.85331 3.96818 4.03181 4.16656 4.23331 4.31756 4.33224 4.36551 4.39167 4.45945 4.50817 4.53198 4.57093 4.63147 4.69425 4.75155 4.80522 4.82811 4.89749 4.90143 4.94070 4.99614 5.01867 5.03105 5.10948 5.12366 5.22835 5.28471 5.35042 5.41859 5.42851 5.48333 5.49989 5.62806 5.90886 6.12471 6.41180 6.45735 6.61109 7.13614 7.16121 7.57695 8.12636 8.71596 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018286 B = 0.001712 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.846768 B =16347.928923 C =17190.155821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.096 4.096 4 C -0.109 4.109 5 H 0.111 0.889 6 C -0.140 4.140 7 C 0.513 3.487 8 O -0.589 6.589 9 N -0.608 5.608 10 C 0.105 3.895 11 C -0.119 4.119 12 C -0.077 4.077 13 C 0.067 3.933 14 N -0.676 5.676 15 C 0.065 3.935 16 C 0.439 3.561 17 O -0.621 6.621 18 N -0.575 5.575 19 C -0.334 4.334 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.272 1.272 27 C -0.118 4.118 28 C 0.110 3.890 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.039 0.961 45 H 0.070 0.930 46 H 0.344 0.656 47 H 0.064 0.936 48 H 0.100 0.900 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.088 0.912 52 H 0.058 0.942 53 H 0.079 0.921 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.268 1.237 -16.467 26.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.134 4.134 4 C -0.130 4.130 5 H 0.129 0.871 6 C -0.197 4.197 7 C 0.303 3.697 8 O -0.469 6.469 9 N -0.340 5.340 10 C -0.017 4.017 11 C -0.157 4.157 12 C -0.096 4.096 13 C -0.062 4.062 14 N -0.309 5.309 15 C -0.067 4.067 16 C 0.226 3.774 17 O -0.507 6.507 18 N -0.212 5.212 19 C -0.463 4.463 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.157 4.157 28 C -0.013 4.013 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.057 0.943 45 H 0.089 0.911 46 H 0.163 0.837 47 H 0.081 0.919 48 H 0.118 0.882 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.106 0.894 52 H 0.077 0.923 53 H 0.097 0.903 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.838 0.727 -16.689 26.707 hybrid contribution 1.207 0.903 0.694 1.660 sum -19.630 1.630 -15.995 25.374 Atomic orbital electron populations 1.21777 0.95744 1.02063 1.01587 1.21572 0.96062 0.95211 1.03017 1.21393 0.92485 0.97742 1.01822 1.21416 0.97513 0.91904 1.02166 0.87147 1.21805 1.01545 1.02129 0.94220 1.21268 0.81188 0.92301 0.74977 1.90646 1.56285 1.47263 1.52755 1.48264 1.10268 1.08578 1.66937 1.22007 0.93636 0.89223 0.96801 1.21824 0.99769 0.97768 0.96342 1.21066 0.96933 0.95080 0.96514 1.22049 0.93292 0.92846 0.97988 1.60051 1.15091 1.52714 1.03001 1.21512 0.94776 0.95708 0.94746 1.20878 0.85453 0.88224 0.82820 1.90483 1.72937 1.42131 1.45172 1.41947 1.30372 1.30278 1.18600 1.19680 1.10782 1.11062 1.04822 0.90205 1.26044 1.00886 0.99690 0.94697 1.69674 1.41673 1.35287 1.09564 0.84923 0.77757 0.77956 0.77681 1.19633 1.19665 1.19724 1.21836 0.97990 0.99336 0.96492 1.21603 0.98553 0.83232 0.97867 0.91758 0.93276 0.92965 0.90535 0.91277 0.93279 0.92567 0.89205 0.92897 0.91507 0.87988 0.90022 0.92509 0.90115 0.90545 0.94312 0.91127 0.83694 0.91857 0.88187 0.77051 0.91350 0.89362 0.92293 0.90281 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.12 -1.34 5.69 30.59 0.17 -1.17 16 3 C -0.10 -1.52 4.01 30.59 0.12 -1.39 16 4 C -0.11 -1.59 1.87 -11.54 -0.02 -1.61 16 5 H 0.11 1.28 6.58 -2.39 -0.02 1.26 16 6 C -0.14 -1.53 8.54 71.98 0.61 -0.91 16 7 C 0.51 10.82 6.89 87.66 0.60 11.43 16 8 O -0.59 -17.17 15.51 -3.02 -0.05 -17.22 16 9 N -0.61 -10.81 2.97 -818.93 -2.44 -13.24 16 10 C 0.11 1.50 5.37 86.36 0.46 1.96 16 11 C -0.12 -2.12 5.27 30.68 0.16 -1.96 16 12 C -0.08 -1.34 2.29 -10.75 -0.02 -1.36 16 13 C 0.07 1.40 5.08 86.30 0.44 1.84 16 14 N -0.68 -19.45 5.55 -517.93 -2.88 -22.32 16 15 C 0.07 2.14 6.17 85.56 0.53 2.67 16 16 C 0.44 20.36 7.82 87.66 0.69 21.05 16 17 O -0.62 -33.42 15.78 -3.07 -0.05 -33.47 16 18 N -0.57 -29.13 5.29 -306.99 -1.62 -30.75 16 19 C -0.33 -18.79 9.68 84.04 0.81 -17.97 16 20 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 22 N -0.92 -49.38 13.05 21.67 0.28 -49.10 16 23 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 27 C -0.12 -1.85 5.37 30.67 0.16 -1.69 16 28 C 0.11 1.89 6.44 86.36 0.56 2.45 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.08 0.68 6.71 -2.38 -0.02 0.67 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.06 1.04 8.09 -2.39 -0.02 1.02 16 36 H 0.09 0.66 6.89 -2.39 -0.02 0.64 16 37 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 0.68 7.06 -2.39 -0.02 0.66 16 39 H 0.10 1.14 5.32 -2.39 -0.01 1.13 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 1.75 7.72 -2.39 -0.02 1.73 16 43 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.34 10.37 8.43 -89.70 -0.76 9.62 16 47 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 49 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 50 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 51 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 54 H 0.08 1.56 7.00 -2.39 -0.02 1.55 16 Total: -1.00 -70.29 422.35 1.14 -69.16 By element: Atomic # 1 Polarization: 40.98 SS G_CDS: -0.60 Total: 40.38 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 6.46 Total: 12.06 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -6.65 Total: -115.41 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -0.10 Total: -50.69 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -70.29 1.14 -69.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204826739.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.762 kcal (2) G-P(sol) polarization free energy of solvation -70.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds