Wall clock time and date at job start Tue Mar 31 2020 22:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46751 * 2 1 4 4 C 1.52999 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47098 * 55.00027 * 4 3 2 6 6 C 1.52996 * 109.47186 * 295.00356 * 4 3 2 7 7 C 1.53002 * 109.47329 * 174.99803 * 4 3 2 8 8 C 1.50706 * 109.46925 * 185.00035 * 7 4 3 9 9 O 1.21279 * 120.00072 * 0.02562 * 8 7 4 10 10 N 1.34777 * 119.99762 * 179.97438 * 8 7 4 11 11 C 1.46496 * 120.00258 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.27257 * 34.30356 * 11 10 8 13 13 C 1.53992 * 110.31006 * 272.21620 * 11 10 8 14 14 N 1.48125 * 106.94340 * 242.33268 * 13 11 10 15 15 C 1.46902 * 110.95199 * 214.10416 * 14 13 11 16 16 C 1.50701 * 109.46998 * 307.36749 * 15 14 13 17 17 O 1.21293 * 119.99653 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99939 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00110 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99553 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00069 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00334 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99803 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47607 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47219 * 120.00431 * 23 21 19 26 26 H 1.48505 * 109.47490 * 239.99875 * 23 21 19 27 27 C 1.48537 * 105.82450 * 334.59335 * 14 13 11 28 28 C 1.54588 * 110.31088 * 156.39025 * 11 10 8 29 29 H 1.09004 * 110.72479 * 22.51835 * 28 11 10 30 30 C 1.53002 * 110.72713 * 259.41207 * 28 11 10 31 31 H 1.09005 * 109.46723 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47427 * 300.00106 * 1 2 3 33 33 H 1.09000 * 109.47514 * 60.00232 * 1 2 3 34 34 H 1.09000 * 109.46822 * 240.00615 * 2 1 3 35 35 H 1.08998 * 109.47006 * 119.99747 * 2 1 3 36 36 H 1.08996 * 109.47505 * 60.00208 * 3 2 1 37 37 H 1.09003 * 109.47586 * 299.99806 * 3 2 1 38 38 H 1.09001 * 109.47593 * 59.99409 * 6 4 3 39 39 H 1.09007 * 109.47359 * 180.02562 * 6 4 3 40 40 H 1.09001 * 109.47049 * 299.99375 * 6 4 3 41 41 H 1.09000 * 109.46497 * 65.00298 * 7 4 3 42 42 H 1.09000 * 109.47312 * 305.00077 * 7 4 3 43 43 H 0.96999 * 120.00047 * 0.02562 * 10 8 7 44 44 H 1.08993 * 109.91871 * 1.65533 * 13 11 10 45 45 H 1.09000 * 109.91596 * 122.95286 * 13 11 10 46 46 H 1.08996 * 109.47039 * 67.37013 * 15 14 13 47 47 H 1.09004 * 109.46659 * 187.36873 * 15 14 13 48 48 H 0.97001 * 120.00350 * 359.97438 * 18 16 15 49 49 H 0.96998 * 120.00490 * 179.97438 * 22 21 19 50 50 H 1.09001 * 110.66359 * 280.82922 * 27 14 13 51 51 H 1.08999 * 110.81467 * 157.76719 * 27 14 13 52 52 H 1.09004 * 109.46621 * 59.99641 * 30 28 11 53 53 H 1.08999 * 109.47399 * 179.97438 * 30 28 11 54 54 H 1.09000 * 109.47316 * 300.00506 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0805 0.8328 1.3063 7 6 4.0798 2.8797 -0.1264 8 6 5.5817 2.8707 -0.2506 9 8 6.1848 1.8185 -0.2400 10 7 6.2546 4.0319 -0.3744 11 6 7.7146 4.0233 -0.4945 12 1 8.0427 3.1442 -1.0492 13 6 8.3658 4.0488 0.9007 14 7 9.1499 5.3024 0.9883 15 6 10.3628 5.1083 1.7940 16 6 9.9907 4.5087 3.1255 17 8 8.8293 4.2665 3.3782 18 7 10.9483 4.2416 4.0355 19 6 10.6098 3.6956 5.2467 20 1 9.5757 3.4800 5.4717 21 6 11.5971 3.4197 6.1846 22 7 12.8553 3.6826 5.9110 23 14 11.1358 2.6765 7.8352 24 1 9.6654 2.4784 7.8953 25 1 11.8182 1.3676 7.9967 26 1 11.5573 3.5923 8.9257 27 6 9.4926 5.6644 -0.4110 28 6 8.2030 5.3124 -1.1942 29 1 7.4638 6.1076 -1.0975 30 6 8.5162 5.0434 -2.6675 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.6766 1.9564 -0.8900 38 1 3.7172 -0.1910 1.3960 39 1 5.1706 0.8333 1.3061 40 1 3.7176 1.4221 2.1484 41 1 3.7918 3.4461 0.7592 42 1 3.6448 3.3434 -1.0118 43 1 5.7722 4.8734 -0.3832 44 1 7.5946 4.0380 1.6707 45 1 9.0244 3.1883 1.0188 46 1 11.0431 4.4366 1.2704 47 1 10.8516 6.0696 1.9522 48 1 11.8770 4.4349 3.8333 49 1 13.5445 3.4904 6.5660 50 1 10.3336 5.0695 -0.7672 51 1 9.7139 6.7286 -0.4926 52 1 7.6170 4.6885 -3.1711 53 1 8.8577 5.9642 -3.1404 54 1 9.2965 4.2858 -2.7406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206501852.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:03 Heat of formation + Delta-G solvation = -118.365424 kcal Electronic energy + Delta-G solvation = -30250.942386 eV Core-core repulsion = 26220.566079 eV Total energy + Delta-G solvation = -4030.376307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.39723 -40.47595 -39.26298 -37.59575 -36.11396 -35.39587 -33.74624 -33.46003 -33.29637 -30.44181 -29.16008 -28.10800 -27.45221 -26.83532 -25.28958 -23.29730 -22.38300 -21.76830 -21.15891 -20.92488 -20.57591 -19.84983 -18.04741 -17.79696 -17.62311 -16.70926 -16.60325 -16.53824 -16.19646 -16.04437 -15.57140 -15.52061 -15.21196 -14.86801 -14.74112 -14.38001 -14.17170 -14.15959 -14.02685 -13.56774 -13.39945 -13.26988 -13.19054 -13.06591 -12.95519 -12.85120 -12.67311 -12.57509 -12.45014 -12.34581 -12.25512 -12.14364 -11.84469 -11.81468 -11.72456 -11.62325 -11.51981 -11.49323 -11.27411 -10.64906 -10.30751 -10.07335 -9.98869 -9.38688 -8.50595 -5.99279 1.32784 1.37849 1.52291 1.69678 1.99948 2.24768 2.25584 2.82312 3.15672 3.23313 3.56512 3.69254 3.78131 3.79542 3.96806 4.01667 4.17828 4.22808 4.29170 4.32079 4.34957 4.43393 4.45162 4.49868 4.56498 4.59591 4.69688 4.71408 4.74877 4.80065 4.81807 4.87790 4.92320 4.96924 5.00093 5.06498 5.13530 5.17910 5.20109 5.24562 5.31311 5.35815 5.37436 5.43232 5.52465 5.56530 5.63869 5.78347 5.90587 6.06149 6.56181 6.62377 7.08807 7.34810 7.50950 8.07113 8.67135 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008641 B = 0.002734 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.415189 B =10237.265804 C =13131.094100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.107 4.107 4 C -0.071 4.071 5 H 0.062 0.938 6 C -0.154 4.154 7 C -0.130 4.130 8 C 0.503 3.497 9 O -0.583 6.583 10 N -0.709 5.709 11 C 0.141 3.859 12 H 0.076 0.924 13 C 0.051 3.949 14 N -0.506 5.506 15 C 0.046 3.954 16 C 0.435 3.565 17 O -0.616 6.616 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.267 1.267 27 C 0.034 3.966 28 C -0.085 4.085 29 H 0.106 0.894 30 C -0.136 4.136 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.037 0.963 40 H 0.050 0.950 41 H 0.106 0.894 42 H 0.127 0.873 43 H 0.415 0.585 44 H 0.063 0.937 45 H 0.006 0.994 46 H 0.065 0.935 47 H 0.117 0.883 48 H 0.396 0.604 49 H 0.278 0.722 50 H 0.053 0.947 51 H 0.109 0.891 52 H 0.063 0.937 53 H 0.082 0.918 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.681 3.185 -19.492 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.144 4.144 4 C -0.090 4.090 5 H 0.080 0.920 6 C -0.211 4.211 7 C -0.170 4.170 8 C 0.292 3.708 9 O -0.463 6.463 10 N -0.361 5.361 11 C 0.035 3.965 12 H 0.094 0.906 13 C -0.078 4.078 14 N -0.230 5.230 15 C -0.085 4.085 16 C 0.223 3.777 17 O -0.503 6.503 18 N -0.210 5.210 19 C -0.461 4.461 20 H 0.094 0.906 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.192 1.192 27 C -0.093 4.093 28 C -0.104 4.104 29 H 0.124 0.876 30 C -0.193 4.193 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.124 0.876 42 H 0.145 0.855 43 H 0.253 0.747 44 H 0.082 0.918 45 H 0.025 0.975 46 H 0.083 0.917 47 H 0.135 0.865 48 H 0.230 0.770 49 H 0.088 0.912 50 H 0.071 0.929 51 H 0.128 0.872 52 H 0.082 0.918 53 H 0.101 0.899 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.139 2.676 -18.942 25.684 hybrid contribution 1.203 -0.948 0.989 1.824 sum -15.936 1.728 -17.952 24.067 Atomic orbital electron populations 1.21760 0.95022 1.01807 1.02147 1.21589 0.96434 0.96983 1.01709 1.21622 0.92606 0.97179 1.03004 1.20854 0.95982 0.94312 0.97861 0.91960 1.21965 1.00808 1.00900 0.97469 1.21822 0.89120 0.99764 1.06253 1.21471 0.91749 0.83161 0.74421 1.90669 1.71684 1.32677 1.51275 1.45987 1.06604 1.09477 1.74057 1.21849 0.80766 0.99791 0.94125 0.90593 1.23074 0.97467 0.89775 0.97499 1.64681 1.17141 1.29905 1.11307 1.22022 0.92948 1.02120 0.91406 1.20814 0.85749 0.83543 0.87598 1.90487 1.20437 1.58726 1.80621 1.41918 1.09116 1.55831 1.14129 1.19650 0.94710 1.39234 0.92532 0.90640 1.26044 0.94594 0.97647 1.03023 1.69672 1.00338 1.48368 1.37646 0.84881 0.78148 0.78171 0.77189 1.20011 1.19595 1.19196 1.23546 0.96896 1.03001 0.85838 1.22315 0.97315 0.95359 0.95403 0.87569 1.21737 1.01909 1.02749 0.92926 0.92733 0.92620 0.92050 0.92369 0.92707 0.91382 0.90223 0.92368 0.94423 0.93079 0.87610 0.85524 0.74730 0.91827 0.97536 0.91716 0.86477 0.76992 0.91232 0.92868 0.87243 0.91832 0.89918 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 71.98 0.71 -1.09 16 2 C -0.13 -1.93 5.69 30.59 0.17 -1.76 16 3 C -0.11 -1.52 4.68 30.59 0.14 -1.37 16 4 C -0.07 -1.42 2.04 -10.79 -0.02 -1.44 16 5 H 0.06 1.42 7.95 -2.38 -0.02 1.41 16 6 C -0.15 -3.98 8.69 71.98 0.63 -3.36 16 7 C -0.13 -2.28 5.18 29.85 0.15 -2.13 16 8 C 0.50 13.38 7.54 87.66 0.66 14.04 16 9 O -0.58 -21.24 13.64 -3.03 -0.04 -21.28 16 10 N -0.71 -16.35 5.02 -438.38 -2.20 -18.55 16 11 C 0.14 3.81 2.89 45.87 0.13 3.94 16 12 H 0.08 2.30 7.31 -2.38 -0.02 2.28 16 13 C 0.05 1.92 4.87 86.40 0.42 2.34 16 14 N -0.51 -16.77 5.27 -886.95 -4.67 -21.44 16 15 C 0.05 1.69 5.48 85.56 0.47 2.16 16 16 C 0.44 21.78 7.36 87.66 0.64 22.43 16 17 O -0.62 -35.46 13.37 -3.07 -0.04 -35.50 16 18 N -0.57 -30.63 5.29 -306.99 -1.62 -32.25 16 19 C -0.33 -19.54 9.68 84.04 0.81 -18.72 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 22 N -0.92 -50.78 13.05 21.66 0.28 -50.50 16 23 Si 0.99 44.35 29.55 68.60 2.03 46.37 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 C 0.03 0.76 6.01 86.65 0.52 1.28 16 28 C -0.08 -1.57 3.36 -9.59 -0.03 -1.61 16 29 H 0.11 1.63 7.75 -2.38 -0.02 1.61 16 30 C -0.14 -1.88 9.17 71.98 0.66 -1.22 16 31 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 0.93 6.57 -2.39 -0.02 0.91 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 1.38 6.57 -2.39 -0.02 1.37 16 39 H 0.04 1.27 5.95 -2.38 -0.01 1.25 16 40 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.42 6.70 8.36 -92.71 -0.78 5.92 16 44 H 0.06 2.91 6.53 -2.39 -0.02 2.89 16 45 H 0.01 0.27 7.60 -2.39 -0.02 0.25 16 46 H 0.06 2.17 7.89 -2.39 -0.02 2.15 16 47 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 48 H 0.40 20.06 7.90 -92.71 -0.73 19.33 16 49 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 50 H 0.05 1.13 7.74 -2.39 -0.02 1.11 16 51 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 52 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 53 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 54 H 0.05 0.79 8.11 -2.39 -0.02 0.77 16 Total: -1.00 -77.47 422.08 -0.34 -77.82 By element: Atomic # 1 Polarization: 42.73 SS G_CDS: -0.62 Total: 42.11 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 6.55 Total: 13.22 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -8.21 Total: -122.74 kcal Atomic # 8 Polarization: -56.70 SS G_CDS: -0.08 Total: -56.78 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -77.47 -0.34 -77.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206501852.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.549 kcal (2) G-P(sol) polarization free energy of solvation -77.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds