Wall clock time and date at job start Tue Mar 31 2020 22:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46847 * 2 1 4 4 C 1.52994 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46970 * 304.99734 * 4 3 2 6 6 C 1.53001 * 109.47368 * 64.99313 * 4 3 2 7 7 C 1.52997 * 109.47404 * 184.99783 * 4 3 2 8 8 C 1.50701 * 109.47212 * 174.99684 * 7 4 3 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 4 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 4 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.64857 * 34.30686 * 11 10 8 13 13 C 1.54942 * 110.72634 * 271.14913 * 11 10 8 14 14 N 1.48533 * 103.22720 * 204.23084 * 13 11 10 15 15 C 1.46903 * 110.99958 * 159.72026 * 14 13 11 16 16 C 1.50702 * 109.46613 * 69.87360 * 15 14 13 17 17 O 1.21287 * 120.00514 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99653 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00035 * 180.02562 * 18 16 15 20 20 H 1.07993 * 119.99921 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99874 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00138 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99890 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47419 * 89.99718 * 23 21 19 25 25 H 1.48497 * 109.47220 * 210.00099 * 23 21 19 26 26 H 1.48500 * 109.47165 * 329.99879 * 23 21 19 27 27 C 1.47905 * 105.82195 * 39.20582 * 14 13 11 28 28 C 1.54302 * 107.08455 * 334.52359 * 27 14 13 29 29 H 1.08997 * 110.28341 * 120.27070 * 28 27 14 30 30 C 1.52997 * 110.47249 * 242.53298 * 28 27 14 31 31 H 1.09000 * 109.47068 * 60.00693 * 1 2 3 32 32 H 1.09008 * 109.46693 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47953 * 300.00280 * 1 2 3 34 34 H 1.08992 * 109.47247 * 239.99963 * 2 1 3 35 35 H 1.09000 * 109.47068 * 119.99307 * 2 1 3 36 36 H 1.09001 * 109.47031 * 59.99161 * 3 2 1 37 37 H 1.09009 * 109.46835 * 299.99673 * 3 2 1 38 38 H 1.08996 * 109.47271 * 300.00893 * 6 4 3 39 39 H 1.09008 * 109.46731 * 60.00275 * 6 4 3 40 40 H 1.08998 * 109.47430 * 180.02562 * 6 4 3 41 41 H 1.09002 * 109.47153 * 54.99686 * 7 4 3 42 42 H 1.09001 * 109.46832 * 294.99876 * 7 4 3 43 43 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 44 44 H 1.08996 * 110.66442 * 322.66391 * 13 11 10 45 45 H 1.08998 * 110.66302 * 85.62677 * 13 11 10 46 46 H 1.08995 * 109.47094 * 189.87387 * 15 14 13 47 47 H 1.08996 * 109.47097 * 309.87633 * 15 14 13 48 48 H 0.97007 * 119.99885 * 359.97438 * 18 16 15 49 49 H 0.96996 * 120.00100 * 180.02562 * 22 21 19 50 50 H 1.08999 * 109.91315 * 94.01923 * 27 14 13 51 51 H 1.08997 * 109.91609 * 215.12010 * 27 14 13 52 52 H 1.09007 * 109.47081 * 175.63564 * 30 28 27 53 53 H 1.08996 * 109.47271 * 295.63300 * 30 28 27 54 54 H 1.08998 * 109.47375 * 55.63731 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 1 3.9329 0.8534 0.8428 6 6 4.0806 0.8327 -1.3063 7 6 4.0798 2.8797 0.1263 8 6 5.5817 2.8708 0.2505 9 8 6.1848 1.8186 0.2392 10 7 6.2546 4.0321 0.3732 11 6 7.7146 4.0234 0.4934 12 1 8.1439 3.2130 -0.0957 13 6 8.1419 3.9079 1.9783 14 7 9.5027 4.5030 1.9876 15 6 9.8847 4.9221 3.3428 16 6 10.1099 3.7037 4.2006 17 8 9.9659 2.5953 3.7296 18 7 10.4704 3.8457 5.4915 19 6 10.6758 2.7373 6.2718 20 1 10.5484 1.7505 5.8522 21 6 11.0479 2.8838 7.6025 22 7 11.2035 4.0847 8.1130 23 14 11.3271 1.3736 8.6659 24 1 12.7498 0.9582 8.5721 25 1 10.9971 1.6944 10.0777 26 1 10.4564 0.2675 8.1931 27 6 9.4421 5.6626 1.0715 28 6 8.3069 5.3852 0.0638 29 1 7.5476 6.1647 0.1261 30 6 8.8637 5.2972 -1.3586 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3635 0.5138 0.8898 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 1.6765 1.9564 0.8899 37 1 1.6766 1.9563 -0.8901 38 1 3.7173 -0.1910 -1.3959 39 1 3.7175 1.4220 -2.1485 40 1 5.1705 0.8324 -1.3057 41 1 3.6447 3.3435 1.0116 42 1 3.7918 3.4461 -0.7593 43 1 5.7722 4.8735 0.3819 44 1 7.4682 4.4781 2.6179 45 1 8.1736 2.8637 2.2892 46 1 10.8023 5.5086 3.2966 47 1 9.0877 5.5278 3.7740 48 1 10.5852 4.7322 5.8683 49 1 11.4636 4.1869 9.0418 50 1 9.2271 6.5703 1.6353 51 1 10.3899 5.7689 0.5439 52 1 8.0628 5.0248 -2.0460 53 1 9.2773 6.2634 -1.6473 54 1 9.6474 4.5406 -1.3958 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206501853.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:07 Heat of formation + Delta-G solvation = -120.155202 kcal Electronic energy + Delta-G solvation = -29975.069989 eV Core-core repulsion = 25944.616072 eV Total energy + Delta-G solvation = -4030.453917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.34989 -40.41494 -39.32498 -37.60251 -36.07343 -35.46490 -33.77006 -33.47593 -33.24643 -30.46119 -29.14191 -28.09119 -27.43757 -26.80179 -25.34840 -23.29337 -22.39652 -21.65855 -21.19411 -21.02960 -20.56880 -19.90952 -18.12826 -17.73620 -17.57325 -16.65848 -16.57878 -16.31500 -16.24836 -15.91989 -15.69321 -15.46546 -15.04258 -14.81102 -14.70142 -14.58202 -14.39198 -14.19725 -14.08445 -13.76260 -13.51955 -13.20142 -13.16185 -12.98926 -12.93421 -12.79775 -12.61852 -12.45255 -12.42479 -12.38001 -12.15692 -12.14747 -11.89744 -11.81585 -11.69639 -11.62432 -11.50608 -11.48374 -11.27752 -10.68911 -10.33688 -10.06227 -10.01377 -9.32292 -8.48861 -5.97331 1.35195 1.38491 1.51476 1.69055 2.03536 2.13170 2.27449 2.86725 3.17265 3.38047 3.52668 3.64502 3.78351 3.81317 3.94718 3.97885 4.15698 4.25189 4.26992 4.28456 4.33147 4.42444 4.44297 4.49904 4.56711 4.58563 4.68100 4.71621 4.74047 4.80439 4.85980 4.93134 4.94526 4.98344 5.03977 5.05654 5.08846 5.13348 5.20192 5.26304 5.29836 5.38147 5.38427 5.43561 5.49353 5.56373 5.60759 5.82401 5.95979 6.09881 6.59144 6.61184 7.11451 7.35796 7.54261 8.11868 8.68605 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009109 B = 0.002464 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.129147 B =11361.276017 C =13853.941783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.106 4.106 4 C -0.079 4.079 5 H 0.045 0.955 6 C -0.149 4.149 7 C -0.127 4.127 8 C 0.502 3.498 9 O -0.581 6.581 10 N -0.710 5.710 11 C 0.153 3.847 12 H 0.070 0.930 13 C 0.039 3.961 14 N -0.518 5.518 15 C 0.052 3.948 16 C 0.437 3.563 17 O -0.619 6.619 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.073 0.927 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.270 1.270 25 H -0.267 1.267 26 H -0.277 1.277 27 C 0.037 3.963 28 C -0.091 4.091 29 H 0.113 0.887 30 C -0.136 4.136 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.113 0.887 42 H 0.125 0.875 43 H 0.418 0.582 44 H 0.045 0.955 45 H 0.041 0.959 46 H 0.115 0.885 47 H 0.073 0.927 48 H 0.397 0.603 49 H 0.278 0.722 50 H 0.069 0.931 51 H 0.090 0.910 52 H 0.062 0.938 53 H 0.081 0.919 54 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.698 8.503 -19.652 28.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.143 4.143 4 C -0.098 4.098 5 H 0.064 0.936 6 C -0.207 4.207 7 C -0.167 4.167 8 C 0.290 3.710 9 O -0.461 6.461 10 N -0.363 5.363 11 C 0.047 3.953 12 H 0.089 0.911 13 C -0.091 4.091 14 N -0.242 5.242 15 C -0.079 4.079 16 C 0.225 3.775 17 O -0.505 6.505 18 N -0.212 5.212 19 C -0.463 4.463 20 H 0.091 0.909 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.195 1.195 25 H -0.191 1.191 26 H -0.202 1.202 27 C -0.091 4.091 28 C -0.111 4.111 29 H 0.131 0.869 30 C -0.194 4.194 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.131 0.869 42 H 0.143 0.857 43 H 0.256 0.744 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.133 0.867 47 H 0.090 0.910 48 H 0.231 0.769 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.109 0.891 52 H 0.081 0.919 53 H 0.100 0.900 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.917 6.729 -19.952 27.648 hybrid contribution -0.014 0.122 1.591 1.596 sum -17.931 6.850 -18.361 26.563 Atomic orbital electron populations 1.21758 0.94987 1.01779 1.02193 1.21598 0.96469 0.97186 1.01587 1.21613 0.92651 0.96992 1.03060 1.20891 0.96012 0.94528 0.98327 0.93631 1.21927 1.01011 1.00801 0.96920 1.21807 0.88702 0.99654 1.06500 1.21552 0.91788 0.83132 0.74489 1.90721 1.71630 1.32739 1.50963 1.45900 1.06411 1.09611 1.74398 1.21692 0.80638 0.99119 0.93881 0.91149 1.23391 0.88908 0.99387 0.97374 1.64291 1.25698 1.26994 1.07264 1.21938 1.03142 0.93849 0.89020 1.20893 0.82327 0.91507 0.82806 1.90512 1.57293 1.29025 1.73679 1.41909 1.61090 1.09159 1.09019 1.19602 1.45632 0.88125 0.92901 0.90880 1.26010 0.96400 1.01012 0.97778 1.69661 1.47529 1.22767 1.16002 0.84957 0.78739 0.77436 0.77371 1.19539 1.19137 1.20188 1.23195 1.00093 0.91857 0.93909 1.22270 0.97525 0.95138 0.96138 0.86876 1.21784 1.00895 1.02800 0.93881 0.91946 0.92859 0.92579 0.92004 0.93401 0.91211 0.90197 0.92834 0.91533 0.93917 0.86857 0.85672 0.74415 0.93676 0.94023 0.86729 0.90957 0.76925 0.91236 0.91251 0.89146 0.91926 0.90035 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.13 -1.90 5.69 30.60 0.17 -1.72 16 3 C -0.11 -1.37 4.68 30.59 0.14 -1.22 16 4 C -0.08 -1.45 2.04 -10.80 -0.02 -1.47 16 5 H 0.05 1.15 7.96 -2.38 -0.02 1.13 16 6 C -0.15 -3.00 8.69 71.98 0.63 -2.37 16 7 C -0.13 -1.89 5.17 29.85 0.15 -1.73 16 8 C 0.50 12.26 7.55 87.66 0.66 12.92 16 9 O -0.58 -21.00 13.65 -3.03 -0.04 -21.04 16 10 N -0.71 -14.09 5.19 -436.83 -2.27 -16.36 16 11 C 0.15 4.02 2.92 46.20 0.14 4.16 16 12 H 0.07 2.35 7.34 -2.39 -0.02 2.33 16 13 C 0.04 1.36 5.54 86.65 0.48 1.84 16 14 N -0.52 -17.66 4.96 -886.93 -4.39 -22.05 16 15 C 0.05 1.87 5.18 85.56 0.44 2.31 16 16 C 0.44 22.13 7.59 87.66 0.66 22.79 16 17 O -0.62 -37.16 14.42 -3.05 -0.04 -37.20 16 18 N -0.57 -30.71 5.29 -306.98 -1.62 -32.33 16 19 C -0.33 -19.74 9.68 84.04 0.81 -18.93 16 20 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -50.49 13.05 21.66 0.28 -50.21 16 23 Si 0.99 44.52 29.55 68.60 2.03 46.54 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 27 C 0.04 0.81 6.35 86.55 0.55 1.36 16 28 C -0.09 -1.61 3.33 -9.81 -0.03 -1.65 16 29 H 0.11 1.25 7.73 -2.39 -0.02 1.23 16 30 C -0.14 -2.10 8.90 71.98 0.64 -1.46 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.92 6.57 -2.39 -0.02 0.90 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.05 1.04 6.57 -2.39 -0.02 1.02 16 39 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.04 1.15 5.95 -2.39 -0.01 1.14 16 41 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.42 4.62 8.36 -92.71 -0.78 3.84 16 44 H 0.05 1.47 7.85 -2.39 -0.02 1.46 16 45 H 0.04 1.98 6.92 -2.39 -0.02 1.96 16 46 H 0.11 3.56 8.11 -2.39 -0.02 3.54 16 47 H 0.07 2.27 7.90 -2.39 -0.02 2.25 16 48 H 0.40 19.88 7.90 -92.70 -0.73 19.15 16 49 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 50 H 0.07 1.23 7.77 -2.39 -0.02 1.21 16 51 H 0.09 1.87 7.70 -2.39 -0.02 1.85 16 52 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 53 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 54 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -81.32 423.95 -0.07 -81.39 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.62 Total: 37.66 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 6.61 Total: 13.61 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -8.00 Total: -120.95 kcal Atomic # 8 Polarization: -58.16 SS G_CDS: -0.09 Total: -58.24 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -81.32 -0.07 -81.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206501853.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.761 kcal (2) G-P(sol) polarization free energy of solvation -81.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds