Wall clock time and date at job start Tue Mar 31 2020 22:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47325 * 2 1 4 4 C 1.53006 * 109.47011 * 183.78233 * 3 2 1 5 5 H 1.09006 * 109.46623 * 56.56723 * 4 3 2 6 6 C 1.52994 * 109.47415 * 296.56905 * 4 3 2 7 7 C 1.53002 * 109.46793 * 302.16508 * 6 4 3 8 8 C 1.50701 * 109.46790 * 176.56342 * 4 3 2 9 9 O 1.21280 * 119.99847 * 20.32973 * 8 4 3 10 10 N 1.34776 * 119.99690 * 200.32596 * 8 4 3 11 11 C 1.46927 * 120.63406 * 4.58411 * 10 8 4 12 12 C 1.53624 * 108.54043 * 126.36435 * 11 10 8 13 13 C 1.53042 * 109.24138 * 54.86543 * 12 11 10 14 14 C 1.53042 * 109.53177 * 298.50801 * 13 12 11 15 15 H 1.09006 * 109.49708 * 301.40520 * 14 13 12 16 16 N 1.46909 * 109.52072 * 181.33596 * 14 13 12 17 17 C 1.46901 * 111.00119 * 85.14320 * 16 14 13 18 18 C 1.50694 * 109.46834 * 180.02562 * 17 16 14 19 19 O 1.21294 * 120.00357 * 359.97438 * 18 17 16 20 20 N 1.34781 * 120.00033 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00133 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99791 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00001 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99839 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99856 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47110 * 60.00185 * 25 23 21 27 27 H 1.48502 * 109.47106 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47206 * 300.00012 * 25 23 21 29 29 C 1.46925 * 120.62971 * 184.86542 * 10 8 4 30 30 H 1.08993 * 109.47378 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46672 * 300.00179 * 1 2 3 32 32 H 1.09005 * 109.47062 * 59.99361 * 1 2 3 33 33 H 1.08999 * 109.47039 * 240.00215 * 2 1 3 34 34 H 1.08995 * 109.47245 * 120.00156 * 2 1 3 35 35 H 1.08999 * 109.47379 * 303.78560 * 3 2 1 36 36 H 1.08995 * 109.46910 * 63.78646 * 3 2 1 37 37 H 1.09003 * 109.47317 * 62.16171 * 6 4 3 38 38 H 1.08994 * 109.47418 * 182.16591 * 6 4 3 39 39 H 1.09000 * 109.47456 * 65.74211 * 7 6 4 40 40 H 1.09003 * 109.46774 * 185.74467 * 7 6 4 41 41 H 1.09005 * 109.47306 * 305.74064 * 7 6 4 42 42 H 1.08988 * 109.59084 * 246.20457 * 11 10 8 43 43 H 1.09000 * 109.58131 * 6.63216 * 11 10 8 44 44 H 1.09003 * 109.63931 * 294.86659 * 12 11 10 45 45 H 1.09002 * 109.45398 * 174.74154 * 12 11 10 46 46 H 1.08998 * 109.46087 * 178.48966 * 13 12 11 47 47 H 1.08996 * 109.46419 * 58.52423 * 13 12 11 48 48 H 1.00900 * 110.99693 * 321.18649 * 16 14 13 49 49 H 1.08994 * 109.47104 * 299.99914 * 17 16 14 50 50 H 1.09002 * 109.46983 * 60.00211 * 17 16 14 51 51 H 0.96998 * 120.00042 * 0.02562 * 20 18 17 52 52 H 0.96992 * 119.99757 * 179.97438 * 24 23 21 53 53 H 1.09007 * 109.58471 * 353.37724 * 29 10 8 54 54 H 1.09000 * 109.59030 * 113.65468 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5671 1.4435 -0.0952 5 1 3.8759 0.8964 -0.9860 6 6 4.1560 0.7704 1.1462 7 6 3.6785 1.5060 2.4000 8 6 4.0642 2.8636 -0.1802 9 8 3.3591 3.7763 0.1948 10 7 5.2923 3.1193 -0.6730 11 6 6.1185 2.0362 -1.2234 12 6 6.5559 2.4287 -2.6428 13 6 7.2539 3.7899 -2.5973 14 6 6.2757 4.8495 -2.0848 15 1 5.4047 4.8874 -2.7391 16 7 6.9362 6.1617 -2.0714 17 6 6.8456 6.8102 -3.3865 18 6 7.5330 8.1502 -3.3341 19 8 8.0473 8.5281 -2.3027 20 7 7.5762 8.9288 -4.4334 21 6 8.2011 10.1481 -4.3857 22 1 8.6591 10.4846 -3.4673 23 6 8.2462 10.9505 -5.5192 24 7 7.6894 10.5409 -6.6368 25 14 9.0983 12.6116 -5.4543 26 1 10.5259 12.4218 -5.0922 27 1 9.0073 13.2669 -6.7839 28 1 8.4385 13.4669 -4.4353 29 6 5.8328 4.4855 -0.6643 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6224 1.9756 -0.8541 36 1 1.7332 1.9363 0.9219 37 1 3.8272 -0.2681 1.1870 38 1 5.2442 0.8053 1.0968 39 1 2.6004 1.3845 2.5042 40 1 4.1773 1.0918 3.2762 41 1 3.9179 2.5659 2.3128 42 1 6.9967 1.8908 -0.5945 43 1 5.5364 1.1154 -1.2605 44 1 5.6822 2.4892 -3.2918 45 1 7.2458 1.6790 -3.0304 46 1 7.5895 4.0596 -3.5986 47 1 8.1131 3.7353 -1.9288 48 1 7.8968 6.0799 -1.7739 49 1 7.3296 6.1829 -4.1349 50 1 5.7975 6.9491 -3.6516 51 1 7.1646 8.6267 -5.2582 52 1 7.7206 11.1012 -7.4279 53 1 5.0622 5.1812 -0.3321 54 1 6.6867 4.5364 0.0113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210370832.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:55 Heat of formation + Delta-G solvation = -118.812644 kcal Electronic energy + Delta-G solvation = -30159.263856 eV Core-core repulsion = 26128.868157 eV Total energy + Delta-G solvation = -4030.395699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.59372 -40.25937 -39.09251 -37.27945 -36.40394 -35.78641 -33.78951 -33.31021 -33.05089 -31.36199 -29.74274 -27.96023 -26.83692 -26.01256 -25.33925 -23.63653 -23.34410 -22.06465 -21.31224 -20.82165 -19.93965 -19.42948 -18.16631 -17.85685 -17.05667 -16.98801 -16.72119 -16.40606 -16.23264 -15.98720 -15.51044 -15.44484 -15.27244 -14.83901 -14.69993 -14.60995 -14.46149 -14.14857 -13.94189 -13.73304 -13.56324 -13.54913 -13.32731 -13.28118 -12.93783 -12.89160 -12.69820 -12.45219 -12.39452 -12.14387 -12.10971 -12.09608 -11.99077 -11.80198 -11.72633 -11.69957 -11.52098 -11.50804 -11.24778 -10.57973 -10.40558 -10.04139 -9.72930 -9.27900 -8.48346 -5.97454 1.38614 1.40614 1.51727 1.64813 1.92515 2.01972 2.28439 2.92827 3.18458 3.46413 3.50746 3.76141 3.77233 3.82911 3.90572 3.99973 4.12154 4.20462 4.24856 4.28974 4.29482 4.34997 4.41396 4.42280 4.52221 4.54706 4.61139 4.68112 4.73484 4.78989 4.81936 4.86202 4.89228 4.94589 5.00596 5.05161 5.11230 5.15508 5.18967 5.20944 5.28110 5.31183 5.38983 5.39835 5.44471 5.47965 5.58017 5.86377 6.06143 6.36743 6.45792 6.57544 7.10088 7.21233 7.53085 8.08316 8.68814 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022407 B = 0.001855 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.310868 B =15088.798280 C =15283.765940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.103 4.103 4 C -0.101 4.101 5 H 0.121 0.879 6 C -0.107 4.107 7 C -0.158 4.158 8 C 0.512 3.488 9 O -0.588 6.588 10 N -0.609 5.609 11 C 0.099 3.901 12 C -0.125 4.125 13 C -0.148 4.148 14 C 0.084 3.916 15 H 0.070 0.930 16 N -0.679 5.679 17 C 0.070 3.930 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.269 1.269 28 H -0.274 1.274 29 C 0.128 3.872 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.025 0.975 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.064 0.936 45 H 0.103 0.897 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.349 0.651 49 H 0.071 0.929 50 H 0.095 0.905 51 H 0.396 0.604 52 H 0.278 0.722 53 H 0.061 0.939 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 -30.223 8.784 32.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.141 4.141 4 C -0.122 4.122 5 H 0.139 0.861 6 C -0.145 4.145 7 C -0.215 4.215 8 C 0.302 3.698 9 O -0.468 6.468 10 N -0.341 5.341 11 C -0.022 4.022 12 C -0.163 4.163 13 C -0.187 4.187 14 C -0.027 4.027 15 H 0.088 0.912 16 N -0.311 5.311 17 C -0.062 4.062 18 C 0.224 3.776 19 O -0.509 6.509 20 N -0.209 5.209 21 C -0.466 4.466 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.818 3.182 26 H -0.195 1.195 27 H -0.194 1.194 28 H -0.199 1.199 29 C 0.005 3.995 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.083 0.917 45 H 0.122 0.878 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.169 0.831 49 H 0.089 0.911 50 H 0.113 0.887 51 H 0.230 0.770 52 H 0.088 0.912 53 H 0.080 0.920 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.006 -29.059 9.719 31.670 hybrid contribution 0.700 1.091 -1.030 1.656 sum -7.306 -27.968 8.689 30.184 Atomic orbital electron populations 1.21790 0.96108 1.02053 1.01377 1.21544 0.95710 0.94878 1.03283 1.21467 0.92687 0.98102 1.01829 1.21512 0.97286 0.90959 1.02424 0.86135 1.21531 1.00971 1.00514 0.91471 1.21854 1.01787 0.99313 0.98541 1.21414 0.80321 0.92449 0.75600 1.90687 1.56741 1.48844 1.50541 1.48232 1.16441 1.08764 1.60702 1.22250 0.95908 0.89715 0.94353 1.21944 1.01203 0.96537 0.96653 1.22263 0.98675 0.95881 1.01882 1.21844 0.97268 0.87028 0.96537 0.91188 1.59939 1.23155 1.21437 1.26533 1.21489 1.01137 0.91851 0.91731 1.20833 0.84686 0.88323 0.83708 1.90491 1.52224 1.75992 1.32211 1.41920 1.50381 1.16833 1.11765 1.19646 1.33575 0.95042 0.98307 0.90295 1.26065 0.97897 1.03200 0.94128 1.69664 1.44698 1.39916 1.01754 0.84972 0.78553 0.76959 0.77741 1.19499 1.19370 1.19905 1.21253 0.98670 0.83297 0.96321 0.91543 0.93424 0.93420 0.90564 0.90429 0.93596 0.92564 0.87813 0.90481 0.92331 0.91497 0.95548 0.89598 0.86687 0.91691 0.87816 0.91678 0.90749 0.83148 0.91118 0.88691 0.76981 0.91238 0.91994 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.91 71.98 0.71 -0.96 16 2 C -0.12 -1.11 5.56 30.59 0.17 -0.94 16 3 C -0.10 -1.60 3.81 30.60 0.12 -1.49 16 4 C -0.10 -1.36 1.68 -11.54 -0.02 -1.38 16 5 H 0.12 0.94 6.31 -2.38 -0.02 0.92 16 6 C -0.11 -1.06 5.26 30.59 0.16 -0.90 16 7 C -0.16 -2.37 9.20 71.98 0.66 -1.71 16 8 C 0.51 11.65 5.80 87.66 0.51 12.15 16 9 O -0.59 -19.54 15.05 -3.03 -0.05 -19.58 16 10 N -0.61 -11.95 2.97 -818.09 -2.43 -14.37 16 11 C 0.10 1.04 5.78 86.51 0.50 1.54 16 12 C -0.12 -1.41 6.10 30.82 0.19 -1.22 16 13 C -0.15 -2.60 5.14 30.62 0.16 -2.45 16 14 C 0.08 2.08 2.62 44.99 0.12 2.20 16 15 H 0.07 1.87 7.80 -2.38 -0.02 1.85 16 16 N -0.68 -22.23 5.88 -495.17 -2.91 -25.14 16 17 C 0.07 2.50 5.97 85.55 0.51 3.01 16 18 C 0.44 21.37 7.82 87.65 0.69 22.05 16 19 O -0.62 -35.36 15.78 -3.07 -0.05 -35.41 16 20 N -0.57 -30.00 5.29 -306.98 -1.62 -31.62 16 21 C -0.34 -19.45 9.68 84.04 0.81 -18.63 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 25 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 28 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 29 C 0.13 3.29 6.05 86.36 0.52 3.81 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.56 6.76 -2.39 -0.02 0.54 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 1.12 6.20 -2.39 -0.01 1.10 16 37 H 0.10 0.52 6.71 -2.39 -0.02 0.51 16 38 H 0.08 0.63 7.58 -2.39 -0.02 0.61 16 39 H 0.06 0.88 6.64 -2.39 -0.02 0.87 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.03 0.57 6.75 -2.38 -0.02 0.55 16 42 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.12 0.58 5.40 -2.39 -0.01 0.57 16 44 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 1.21 7.44 -2.39 -0.02 1.19 16 47 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.35 11.57 8.18 -89.69 -0.73 10.84 16 49 H 0.07 2.15 7.43 -2.39 -0.02 2.13 16 50 H 0.09 3.22 8.06 -2.39 -0.02 3.20 16 51 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 52 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 53 H 0.06 2.06 7.00 -2.38 -0.02 2.05 16 54 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -75.93 415.92 0.97 -74.96 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: -0.57 Total: 40.67 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.27 Total: 14.85 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -6.68 Total: -121.02 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -0.09 Total: -54.99 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -75.93 0.97 -74.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210370832.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.852 kcal (2) G-P(sol) polarization free energy of solvation -75.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds