Wall clock time and date at job start Tue Mar 31 2020 22:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 C 1.53002 * 109.46613 * 185.20576 * 3 2 1 5 5 H 1.09001 * 109.47676 * 54.29514 * 4 3 2 6 6 C 1.52995 * 109.47635 * 294.28648 * 4 3 2 7 7 C 1.53001 * 109.47503 * 298.19479 * 6 4 3 8 8 C 1.50703 * 109.46799 * 174.29198 * 4 3 2 9 9 O 1.21287 * 119.99875 * 359.97438 * 8 4 3 10 10 N 1.34773 * 120.00169 * 180.02562 * 8 4 3 11 11 C 1.46500 * 120.00210 * 179.97438 * 10 8 4 12 12 C 1.53117 * 109.52515 * 274.68175 * 11 10 8 13 13 C 1.53030 * 109.28309 * 182.43795 * 12 11 10 14 14 N 1.46849 * 109.52426 * 59.18098 * 13 12 11 15 15 C 1.46894 * 111.00474 * 174.16050 * 14 13 12 16 16 C 1.50702 * 109.47388 * 294.21040 * 15 14 13 17 17 O 1.21292 * 119.99754 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00292 * 179.97438 * 16 15 14 19 19 C 1.37089 * 120.00051 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99895 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00119 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00045 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99958 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47441 * 89.99285 * 23 21 19 25 25 H 1.48504 * 109.47275 * 209.99819 * 23 21 19 26 26 H 1.48506 * 109.47000 * 329.99629 * 23 21 19 27 27 C 1.46851 * 111.19704 * 298.26091 * 14 13 12 28 28 C 1.53035 * 109.52131 * 61.73783 * 27 14 13 29 29 H 1.09011 * 109.47280 * 300.00111 * 1 2 3 30 30 H 1.09001 * 109.47141 * 59.99749 * 1 2 3 31 31 H 1.08995 * 109.47439 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47356 * 239.99654 * 2 1 3 33 33 H 1.09001 * 109.47141 * 120.00251 * 2 1 3 34 34 H 1.08998 * 109.47326 * 65.21081 * 3 2 1 35 35 H 1.08997 * 109.47023 * 305.20250 * 3 2 1 36 36 H 1.08998 * 109.47419 * 178.18736 * 6 4 3 37 37 H 1.09008 * 109.46768 * 58.18774 * 6 4 3 38 38 H 1.09003 * 109.46662 * 306.31694 * 7 6 4 39 39 H 1.08994 * 109.47268 * 186.31076 * 7 6 4 40 40 H 1.09005 * 109.47015 * 66.30987 * 7 6 4 41 41 H 0.96998 * 119.99959 * 0.02562 * 10 8 4 42 42 H 1.08998 * 109.52477 * 34.87088 * 11 10 8 43 43 H 1.09008 * 109.50715 * 302.38370 * 12 11 10 44 44 H 1.09004 * 109.50496 * 62.49755 * 12 11 10 45 45 H 1.08997 * 109.46587 * 299.16614 * 13 12 11 46 46 H 1.08998 * 109.45723 * 179.19057 * 13 12 11 47 47 H 1.09000 * 109.47055 * 54.21320 * 15 14 13 48 48 H 1.09003 * 109.47560 * 174.21037 * 15 14 13 49 49 H 0.96998 * 119.99541 * 0.02562 * 18 16 15 50 50 H 0.96998 * 119.99644 * 180.02562 * 22 21 19 51 51 H 1.08996 * 109.46038 * 301.72451 * 27 14 13 52 52 H 1.09003 * 109.45228 * 181.74968 * 27 14 13 53 53 H 1.09007 * 109.50131 * 180.88058 * 28 27 14 54 54 H 1.08999 * 109.50476 * 60.76724 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4443 -0.1309 5 1 3.8543 0.8705 -1.0111 6 6 4.1843 0.8122 1.1169 7 6 3.8147 1.6434 2.3471 8 6 4.0547 2.8624 -0.2718 9 8 3.2627 3.7810 -0.2684 10 7 5.3730 3.1097 -0.4027 11 6 5.8496 4.4881 -0.5403 12 6 5.7821 4.9086 -2.0111 13 6 6.3378 6.3269 -2.1572 14 7 7.7272 6.3609 -1.6833 15 6 8.3379 7.6727 -1.9363 16 6 8.4549 7.8942 -3.4224 17 8 8.0671 7.0432 -4.1947 18 7 8.9893 9.0384 -3.8932 19 6 9.0962 9.2396 -5.2450 20 1 8.7517 8.4814 -5.9327 21 6 9.6467 10.4194 -5.7305 22 7 9.7486 10.6125 -7.0264 23 14 10.2418 11.7311 -4.5411 24 1 11.6702 11.4908 -4.2133 25 1 10.0959 13.0699 -5.1670 26 1 9.4325 11.6753 -3.2972 27 6 7.8118 6.0067 -0.2606 28 6 7.3001 4.5787 -0.0579 29 1 -0.3634 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.7549 1.9287 0.9329 35 1 1.6026 1.9825 -0.8397 36 1 5.2686 0.7842 1.0096 37 1 3.8047 -0.2026 1.2368 38 1 4.0944 2.6836 2.1800 39 1 4.3460 1.2596 3.2179 40 1 2.7403 1.5793 2.5195 41 1 6.0063 2.3749 -0.4065 42 1 5.2247 5.1511 0.0581 43 1 6.3758 4.2212 -2.6138 44 1 4.7458 4.8872 -2.3485 45 1 5.7352 7.0159 -1.5654 46 1 6.3043 6.6237 -3.2055 47 1 7.7148 8.4537 -1.5005 48 1 9.3296 7.7051 -1.4850 49 1 9.2990 9.7191 -3.2755 50 1 10.1333 11.4360 -7.3652 51 1 7.2023 6.6971 0.3223 52 1 8.8490 6.0710 0.0684 53 1 7.3483 4.3216 1.0003 54 1 7.9177 3.8862 -0.6298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229795439.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:49 Heat of formation + Delta-G solvation = -117.355092 kcal Electronic energy + Delta-G solvation = -30109.086866 eV Core-core repulsion = 26078.754371 eV Total energy + Delta-G solvation = -4030.332495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.41850 -40.60828 -39.24620 -37.34344 -36.23504 -35.75413 -33.96489 -33.74212 -32.50784 -31.82490 -29.81614 -28.79882 -26.54283 -25.70746 -24.25820 -24.16671 -23.37392 -21.80703 -21.28110 -21.11506 -20.19809 -20.04654 -17.96759 -17.59422 -17.42582 -16.97905 -16.88416 -16.51541 -16.33390 -15.92399 -15.49715 -15.37347 -15.13004 -14.98497 -14.84823 -14.56741 -14.49896 -14.25404 -14.03386 -13.96387 -13.77790 -13.54519 -13.24639 -12.97138 -12.93898 -12.80341 -12.72456 -12.42689 -12.34848 -12.18822 -12.11105 -11.99478 -11.89893 -11.84871 -11.80361 -11.58775 -11.46326 -11.44994 -11.28924 -10.65488 -10.35927 -10.23209 -10.00018 -9.21239 -8.40743 -6.01240 1.30183 1.35706 1.44419 1.69115 1.97295 2.20181 2.23325 2.62632 3.14270 3.22062 3.64219 3.75681 3.80612 3.85197 3.92990 4.05685 4.13413 4.23714 4.26229 4.28697 4.34256 4.37604 4.41710 4.43246 4.49971 4.55247 4.63525 4.68335 4.73341 4.74924 4.81694 4.91457 4.93981 4.98332 4.99686 5.08010 5.10523 5.12001 5.18461 5.20153 5.27062 5.31807 5.39562 5.43079 5.53533 5.54167 5.57872 5.90418 6.02083 6.23026 6.60772 6.61550 6.89672 7.31822 7.41159 7.99045 8.77031 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026014 B = 0.001879 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.069773 B =14895.284746 C =15508.659954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.105 4.105 5 H 0.114 0.886 6 C -0.109 4.109 7 C -0.156 4.156 8 C 0.515 3.485 9 O -0.588 6.588 10 N -0.713 5.713 11 C 0.152 3.848 12 C -0.111 4.111 13 C 0.060 3.940 14 N -0.533 5.533 15 C 0.054 3.946 16 C 0.450 3.550 17 O -0.605 6.605 18 N -0.593 5.593 19 C -0.327 4.327 20 H 0.054 0.946 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.255 1.255 25 H -0.276 1.276 26 H -0.233 1.233 27 C 0.056 3.944 28 C -0.110 4.110 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.415 0.585 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.028 0.972 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.128 0.872 49 H 0.389 0.611 50 H 0.278 0.722 51 H 0.042 0.958 52 H 0.103 0.897 53 H 0.101 0.899 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.643 -19.981 25.607 33.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.139 4.139 4 C -0.126 4.126 5 H 0.132 0.868 6 C -0.147 4.147 7 C -0.213 4.213 8 C 0.303 3.697 9 O -0.468 6.468 10 N -0.364 5.364 11 C 0.047 3.953 12 C -0.150 4.150 13 C -0.068 4.068 14 N -0.258 5.258 15 C -0.077 4.077 16 C 0.238 3.762 17 O -0.489 6.489 18 N -0.235 5.235 19 C -0.456 4.456 20 H 0.072 0.928 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.786 3.214 24 H -0.179 1.179 25 H -0.202 1.202 26 H -0.156 1.156 27 C -0.072 4.072 28 C -0.148 4.148 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.051 0.949 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.252 0.748 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.145 0.855 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.060 0.940 52 H 0.121 0.879 53 H 0.120 0.880 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.141 -20.143 24.671 33.135 hybrid contribution -0.065 1.657 -0.266 1.679 sum -9.206 -18.486 24.405 31.970 Atomic orbital electron populations 1.21788 0.96021 1.02031 1.01437 1.21554 0.95815 0.95168 1.03052 1.21422 0.92855 0.97727 1.01860 1.21502 0.97357 0.91444 1.02292 0.86838 1.21563 1.01345 1.00194 0.91560 1.21852 1.01800 0.99091 0.98606 1.21269 0.82084 0.92267 0.74085 1.90690 1.55894 1.48234 1.51980 1.45989 1.07667 1.08953 1.73773 1.20868 0.96235 0.83478 0.94719 1.21781 0.99423 0.96193 0.97629 1.22000 0.87721 0.96619 1.00498 1.61494 1.17519 1.28040 1.18762 1.21830 1.02931 0.91665 0.91284 1.20945 0.81346 0.82030 0.91902 1.90518 1.52720 1.45262 1.60387 1.42037 1.57390 1.17769 1.06279 1.18988 1.40248 1.03975 0.82367 0.92783 1.26121 0.96962 1.00085 0.98314 1.69810 1.45463 1.27981 1.14399 0.85354 0.79982 0.77198 0.78900 1.17932 1.20168 1.15592 1.22217 1.02846 0.96169 0.85962 1.21801 0.92991 0.97228 1.02806 0.93042 0.93623 0.91636 0.91243 0.90267 0.92236 0.93770 0.89820 0.88610 0.94906 0.91087 0.92760 0.74835 0.91486 0.91710 0.93419 0.95351 0.92329 0.90874 0.85455 0.77535 0.91206 0.93959 0.87851 0.88036 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.91 71.98 0.71 -1.07 16 2 C -0.12 -1.25 5.57 30.59 0.17 -1.08 16 3 C -0.10 -1.60 3.87 30.59 0.12 -1.48 16 4 C -0.10 -1.42 2.50 -11.54 -0.03 -1.45 16 5 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 6 C -0.11 -0.90 5.41 30.59 0.17 -0.73 16 7 C -0.16 -1.79 9.28 71.98 0.67 -1.13 16 8 C 0.51 10.91 5.67 87.66 0.50 11.40 16 9 O -0.59 -18.29 15.57 -3.05 -0.05 -18.34 16 10 N -0.71 -12.38 4.98 -442.16 -2.20 -14.58 16 11 C 0.15 3.31 2.52 45.07 0.11 3.43 16 12 C -0.11 -3.25 5.67 30.64 0.17 -3.08 16 13 C 0.06 2.02 5.11 86.32 0.44 2.46 16 14 N -0.53 -15.93 4.40 -900.95 -3.96 -19.90 16 15 C 0.05 1.67 5.45 85.56 0.47 2.13 16 16 C 0.45 20.56 7.46 87.66 0.65 21.21 16 17 O -0.60 -33.79 13.90 -3.07 -0.04 -33.84 16 18 N -0.59 -28.24 5.09 -306.98 -1.56 -29.80 16 19 C -0.33 -19.35 10.16 84.04 0.85 -18.50 16 20 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 21 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 22 N -0.94 -57.05 13.96 21.66 0.30 -56.75 16 23 Si 0.97 39.13 27.74 68.60 1.90 41.04 16 24 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 25 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 26 H -0.23 -7.96 6.52 99.48 0.65 -7.31 16 27 C 0.06 1.09 5.46 86.32 0.47 1.56 16 28 C -0.11 -1.80 5.57 30.65 0.17 -1.63 16 29 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.61 6.80 -2.39 -0.02 0.59 16 34 H 0.06 1.08 6.34 -2.39 -0.02 1.06 16 35 H 0.04 0.93 7.93 -2.39 -0.02 0.91 16 36 H 0.08 0.43 7.62 -2.39 -0.02 0.41 16 37 H 0.10 0.48 6.62 -2.38 -0.02 0.47 16 38 H 0.03 0.53 6.94 -2.39 -0.02 0.51 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.05 0.68 6.69 -2.38 -0.02 0.66 16 41 H 0.41 4.51 8.06 -92.71 -0.75 3.76 16 42 H 0.07 1.72 7.58 -2.39 -0.02 1.70 16 43 H 0.06 1.99 8.14 -2.38 -0.02 1.98 16 44 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 2.53 5.78 -2.39 -0.01 2.52 16 47 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 48 H 0.13 3.06 7.99 -2.39 -0.02 3.04 16 49 H 0.39 15.30 5.76 -92.71 -0.53 14.77 16 50 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 51 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.10 1.59 8.02 -2.39 -0.02 1.57 16 53 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 54 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -83.28 415.10 0.05 -83.22 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.45 Total: 37.34 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 6.12 Total: 11.60 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -7.42 Total: -121.02 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -0.09 Total: -52.17 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.90 Total: 41.04 kcal Total: -83.28 0.05 -83.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229795439.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.130 kcal (2) G-P(sol) polarization free energy of solvation -83.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds