Wall clock time and date at job start Tue Mar 31 2020 22:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46846 * 2 1 4 4 C 1.53000 * 109.46846 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47398 * 305.00335 * 4 3 2 6 6 C 1.53002 * 109.47233 * 65.00509 * 4 3 2 7 7 C 1.52997 * 109.47060 * 185.00166 * 4 3 2 8 8 C 1.50698 * 109.47721 * 175.00208 * 7 4 3 9 9 O 1.21287 * 119.99375 * 359.97438 * 8 7 4 10 10 N 1.34768 * 120.00550 * 180.02562 * 8 7 4 11 11 C 1.46498 * 120.00161 * 359.97438 * 10 8 7 12 12 C 1.46504 * 119.99870 * 180.02562 * 10 8 7 13 13 C 1.53004 * 109.47264 * 90.00146 * 12 10 8 14 14 H 1.09001 * 112.94799 * 287.13899 * 13 12 10 15 15 C 1.53933 * 113.75840 * 155.49420 * 13 12 10 16 16 C 1.53938 * 86.33781 * 221.95762 * 15 13 12 17 17 N 1.47954 * 113.75954 * 58.92931 * 13 12 10 18 18 C 1.46903 * 111.00036 * 251.89910 * 17 13 12 19 19 C 1.50707 * 109.46977 * 170.00222 * 18 17 13 20 20 O 1.21286 * 119.99914 * 0.02562 * 19 18 17 21 21 N 1.34781 * 119.99659 * 180.02562 * 19 18 17 22 22 C 1.37096 * 119.99471 * 179.97438 * 21 19 18 23 23 H 1.07996 * 120.00293 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99536 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99597 * 180.02562 * 24 22 21 26 26 Si 1.86793 * 120.00200 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47014 * 89.99838 * 26 24 22 28 28 H 1.48502 * 109.47396 * 210.00237 * 26 24 22 29 29 H 1.48505 * 109.47221 * 330.00054 * 26 24 22 30 30 H 1.09001 * 109.47624 * 59.99715 * 1 2 3 31 31 H 1.09002 * 109.46642 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47069 * 299.99434 * 1 2 3 33 33 H 1.09002 * 109.47069 * 240.00566 * 2 1 3 34 34 H 1.09001 * 109.47624 * 120.00284 * 2 1 3 35 35 H 1.09002 * 109.46824 * 60.00417 * 3 2 1 36 36 H 1.08991 * 109.47210 * 300.00501 * 3 2 1 37 37 H 1.09002 * 109.47075 * 59.99068 * 6 4 3 38 38 H 1.08996 * 109.47407 * 180.02562 * 6 4 3 39 39 H 1.09000 * 109.46986 * 299.99797 * 6 4 3 40 40 H 1.09000 * 109.47325 * 295.00173 * 7 4 3 41 41 H 1.09008 * 109.47017 * 55.00082 * 7 4 3 42 42 H 1.09006 * 109.46639 * 90.00081 * 11 10 8 43 43 H 1.09002 * 109.47530 * 210.00411 * 11 10 8 44 44 H 1.09001 * 109.47164 * 330.00787 * 11 10 8 45 45 H 1.09006 * 109.47049 * 209.99628 * 12 10 8 46 46 H 1.08989 * 109.47381 * 329.99549 * 12 10 8 47 47 H 1.08997 * 113.73314 * 336.31444 * 15 13 12 48 48 H 1.09001 * 113.73533 * 107.49951 * 15 13 12 49 49 H 1.08998 * 113.75781 * 138.03786 * 16 15 13 50 50 H 1.08998 * 113.75864 * 269.29497 * 16 15 13 51 51 H 1.08994 * 109.47126 * 290.00407 * 18 17 13 52 52 H 1.09002 * 109.46989 * 50.00985 * 18 17 13 53 53 H 0.97000 * 120.00263 * 0.02562 * 21 19 18 54 54 H 0.97006 * 119.99726 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0805 0.8329 -1.3065 7 6 4.0799 2.8796 0.1264 8 6 5.5817 2.8708 0.2505 9 8 6.1848 1.8185 0.2399 10 7 6.2546 4.0319 0.3743 11 6 5.5261 5.3028 0.3877 12 6 7.7146 4.0232 0.4944 13 6 8.3415 4.1045 -0.8990 14 1 8.2447 3.1770 -1.4633 15 6 9.7657 4.6887 -0.9052 16 6 9.3332 5.4705 -2.1587 17 7 7.9495 5.3116 -1.6595 18 6 7.0312 4.9692 -2.7538 19 6 6.4636 6.2329 -3.3472 20 8 6.7922 7.3125 -2.9025 21 7 5.5909 6.1634 -4.3719 22 6 5.0742 7.3130 -4.9113 23 1 5.3667 8.2742 -4.5155 24 6 4.1740 7.2413 -5.9675 25 7 3.6791 8.3432 -6.4849 26 14 3.6674 5.5786 -6.6517 27 1 2.4700 5.0876 -5.9234 28 1 3.3477 5.7140 -8.0955 29 1 4.7819 4.6123 -6.4801 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6766 1.9564 -0.8899 37 1 3.7174 1.4222 -2.1485 38 1 5.1705 0.8324 -1.3058 39 1 3.7173 -0.1909 -1.3961 40 1 3.7919 3.4462 -0.7591 41 1 3.6449 3.3433 1.0118 42 1 5.2602 5.5584 1.4134 43 1 6.1565 6.0875 -0.0306 44 1 4.6193 5.2082 -0.2098 45 1 8.0355 4.8795 1.0876 46 1 8.0335 3.1027 0.9831 47 1 9.9834 5.3230 -0.0459 48 1 10.5428 3.9482 -1.0944 49 1 9.6791 6.5041 -2.1726 50 1 9.5279 4.9444 -3.0933 51 1 7.5719 4.4177 -3.5227 52 1 6.2194 4.3529 -2.3674 53 1 5.3278 5.3000 -4.7272 54 1 3.0504 8.2932 -7.2219 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231132590.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:26 Heat of formation + Delta-G solvation = -69.933213 kcal Electronic energy + Delta-G solvation = -31362.653321 eV Core-core repulsion = 27334.377192 eV Total energy + Delta-G solvation = -4028.276128 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.61062 -40.66160 -39.63639 -37.72315 -36.33009 -35.96391 -33.76555 -33.62577 -32.18363 -30.49334 -28.56356 -27.56023 -27.46171 -27.16100 -25.12518 -24.50255 -22.71499 -21.28523 -21.09634 -20.56845 -20.28492 -19.83468 -18.00257 -17.64512 -17.30355 -17.22408 -16.78899 -16.57109 -16.41730 -16.09882 -15.51226 -15.27634 -15.11893 -14.94597 -14.77876 -14.43424 -14.31802 -14.12752 -14.05954 -13.88874 -13.76381 -13.33547 -13.15952 -13.01759 -12.90468 -12.70293 -12.59344 -12.53731 -12.43331 -12.34948 -12.29743 -12.02620 -11.89441 -11.81671 -11.72200 -11.61803 -11.51123 -11.45964 -11.26926 -10.58278 -10.48915 -10.24274 -9.84055 -9.38949 -8.41637 -6.01469 1.27543 1.31649 1.40300 1.67439 1.94712 2.06539 2.20310 2.62212 3.12834 3.22993 3.53080 3.63077 3.79912 3.81316 3.95768 4.06476 4.14205 4.19404 4.24757 4.26897 4.30678 4.35156 4.36698 4.42277 4.44229 4.56524 4.65221 4.67222 4.72335 4.74647 4.80973 4.82657 4.88172 4.94776 4.97508 4.98259 5.06192 5.09528 5.18616 5.24492 5.25937 5.31546 5.39763 5.42671 5.52288 5.54259 5.56698 5.61891 5.92244 6.04095 6.47078 6.59275 6.88490 7.23730 7.39510 7.96353 8.75917 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.006952 B = 0.004333 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4026.391108 B = 6459.743840 C = 9585.782070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.068 4.068 5 H 0.067 0.933 6 C -0.151 4.151 7 C -0.137 4.137 8 C 0.508 3.492 9 O -0.571 6.571 10 N -0.606 5.606 11 C 0.079 3.921 12 C 0.138 3.862 13 C 0.015 3.985 14 H 0.075 0.925 15 C -0.114 4.114 16 C -0.002 4.002 17 N -0.461 5.461 18 C 0.027 3.973 19 C 0.460 3.540 20 O -0.599 6.599 21 N -0.596 5.596 22 C -0.323 4.323 23 H 0.058 0.942 24 C -0.010 4.010 25 N -0.932 5.932 26 Si 0.956 3.044 27 H -0.254 1.254 28 H -0.274 1.274 29 H -0.239 1.239 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.095 0.905 49 H 0.073 0.927 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.095 0.905 53 H 0.385 0.615 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.565 -18.602 15.018 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.087 4.087 5 H 0.085 0.915 6 C -0.208 4.208 7 C -0.177 4.177 8 C 0.298 3.702 9 O -0.451 6.451 10 N -0.337 5.337 11 C -0.064 4.064 12 C 0.015 3.985 13 C -0.095 4.095 14 H 0.093 0.907 15 C -0.152 4.152 16 C -0.130 4.130 17 N -0.184 5.184 18 C -0.105 4.105 19 C 0.248 3.752 20 O -0.482 6.482 21 N -0.238 5.238 22 C -0.452 4.452 23 H 0.077 0.923 24 C -0.209 4.209 25 N -0.573 5.573 26 Si 0.776 3.224 27 H -0.179 1.179 28 H -0.199 1.199 29 H -0.163 1.163 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.128 0.872 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.111 0.889 46 H 0.106 0.894 47 H 0.120 0.880 48 H 0.114 0.886 49 H 0.092 0.908 50 H 0.090 0.910 51 H 0.092 0.908 52 H 0.113 0.887 53 H 0.220 0.780 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.625 -17.743 15.500 23.616 hybrid contribution -0.271 -0.686 -1.573 1.738 sum 1.354 -18.429 13.927 23.139 Atomic orbital electron populations 1.21778 0.95471 1.01852 1.01882 1.21556 0.96074 0.96560 1.02027 1.21659 0.93503 0.97417 1.02442 1.20834 0.95357 0.93814 0.98728 0.91488 1.21948 1.01470 1.00781 0.96631 1.21862 0.90805 0.99914 1.05121 1.21099 0.91053 0.82873 0.75137 1.90624 1.71171 1.31490 1.51807 1.47867 1.07357 1.06670 1.71826 1.21896 0.97219 0.84948 1.02299 1.21428 0.78841 1.03430 0.94845 1.23944 0.96066 0.92919 0.96563 0.90743 1.23270 0.94980 0.99054 0.97935 1.23935 0.89463 1.01583 0.98046 1.68306 1.05602 1.28206 1.16270 1.22320 0.99011 0.93769 0.95447 1.20634 0.81659 0.91450 0.81491 1.90535 1.62679 1.31896 1.63137 1.42093 1.41916 1.07581 1.32161 1.18979 1.24061 0.86782 1.15381 0.92340 1.25979 0.96128 1.02384 0.96385 1.69792 1.31531 1.29894 1.26111 0.85495 0.80204 0.77966 0.78715 1.17880 1.19931 1.16308 0.92981 0.92387 0.92442 0.92113 0.92018 0.91107 0.92030 0.93385 0.92952 0.92129 0.88740 0.87179 0.90825 0.91144 0.91315 0.88889 0.89420 0.87961 0.88638 0.90805 0.91026 0.90832 0.88722 0.78018 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.86 5.69 30.60 0.17 -1.68 16 3 C -0.11 -1.78 4.68 30.60 0.14 -1.64 16 4 C -0.07 -1.30 2.04 -10.79 -0.02 -1.32 16 5 H 0.07 1.40 7.95 -2.39 -0.02 1.38 16 6 C -0.15 -3.22 8.69 71.98 0.63 -2.59 16 7 C -0.14 -2.64 3.73 29.85 0.11 -2.53 16 8 C 0.51 12.15 7.39 87.66 0.65 12.79 16 9 O -0.57 -16.55 13.55 -3.05 -0.04 -16.59 16 10 N -0.61 -13.61 2.82 -846.75 -2.39 -16.00 16 11 C 0.08 1.76 10.04 127.77 1.28 3.04 16 12 C 0.14 2.87 5.54 86.38 0.48 3.35 16 13 C 0.02 0.34 3.55 45.02 0.16 0.50 16 14 H 0.07 1.77 7.93 -2.39 -0.02 1.75 16 15 C -0.11 -2.11 7.84 31.24 0.25 -1.86 16 16 C 0.00 -0.04 7.95 86.41 0.69 0.65 16 17 N -0.46 -13.47 4.37 -888.33 -3.88 -17.35 16 18 C 0.03 0.86 5.28 85.56 0.45 1.32 16 19 C 0.46 20.75 7.83 87.66 0.69 21.43 16 20 O -0.60 -32.62 16.01 -3.05 -0.05 -32.67 16 21 N -0.60 -28.18 5.09 -306.98 -1.56 -29.75 16 22 C -0.32 -18.73 10.16 84.04 0.85 -17.88 16 23 H 0.06 4.03 7.39 -2.91 -0.02 4.01 16 24 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 25 N -0.93 -55.75 13.96 21.66 0.30 -55.44 16 26 Si 0.96 39.00 27.74 68.60 1.90 40.90 16 27 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 29 H -0.24 -8.48 6.52 99.48 0.65 -7.83 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.95 6.57 -2.39 -0.02 0.93 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 1.35 5.95 -2.39 -0.01 1.33 16 39 H 0.06 1.16 6.57 -2.39 -0.02 1.15 16 40 H 0.09 1.85 7.40 -2.39 -0.02 1.83 16 41 H 0.11 1.68 8.11 -2.38 -0.02 1.67 16 42 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.07 1.99 7.24 -2.39 -0.02 1.97 16 44 H 0.07 1.52 6.44 -2.39 -0.02 1.50 16 45 H 0.09 1.74 7.84 -2.38 -0.02 1.72 16 46 H 0.09 1.81 7.42 -2.39 -0.02 1.80 16 47 H 0.10 1.70 7.94 -2.39 -0.02 1.68 16 48 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.07 1.76 7.48 -2.39 -0.02 1.74 16 51 H 0.07 2.14 7.38 -2.39 -0.02 2.12 16 52 H 0.09 2.85 8.08 -2.39 -0.02 2.83 16 53 H 0.38 15.54 5.76 -92.71 -0.53 15.00 16 54 H 0.28 15.25 8.31 -92.70 -0.77 14.48 16 Total: -1.00 -74.70 423.25 2.27 -72.43 By element: Atomic # 1 Polarization: 42.01 SS G_CDS: 0.28 Total: 42.29 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 7.70 Total: 12.17 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -7.53 Total: -118.53 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -0.09 Total: -49.26 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.90 Total: 40.90 kcal Total: -74.70 2.27 -72.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231132590.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.498 kcal (2) G-P(sol) polarization free energy of solvation -74.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds