Wall clock time and date at job start Tue Mar 31 2020 22:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 C 1.53005 * 109.46867 * 294.99684 * 4 3 2 7 7 C 1.53002 * 109.46776 * 174.99999 * 4 3 2 8 8 C 1.50701 * 109.46807 * 184.99822 * 7 4 3 9 9 O 1.21278 * 120.00202 * 359.97438 * 8 7 4 10 10 N 1.34781 * 119.99711 * 180.02562 * 8 7 4 11 11 C 1.46498 * 120.00224 * 0.02562 * 10 8 7 12 12 C 1.46498 * 119.99590 * 179.97438 * 10 8 7 13 13 C 1.53005 * 109.46676 * 90.00509 * 12 10 8 14 14 H 1.09001 * 112.74832 * 75.76988 * 13 12 10 15 15 C 1.53517 * 113.47191 * 206.61692 * 13 12 10 16 16 C 1.53517 * 83.57606 * 140.78868 * 15 13 12 17 17 N 1.47482 * 113.47358 * 304.99511 * 13 12 10 18 18 C 1.46895 * 111.00070 * 106.53676 * 17 13 12 19 19 C 1.50698 * 109.47406 * 170.00172 * 18 17 13 20 20 O 1.21288 * 119.99745 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99977 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99671 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00095 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99627 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99830 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00230 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47277 * 90.00042 * 26 24 22 28 28 H 1.48499 * 109.47066 * 210.00065 * 26 24 22 29 29 H 1.48497 * 109.47260 * 329.99935 * 26 24 22 30 30 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 31 31 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 33 33 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 34 34 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 36 36 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 37 37 H 1.09001 * 109.47099 * 60.00379 * 6 4 3 38 38 H 1.09004 * 109.46908 * 180.02562 * 6 4 3 39 39 H 1.09000 * 109.47443 * 300.00098 * 6 4 3 40 40 H 1.08993 * 109.47416 * 304.99509 * 7 4 3 41 41 H 1.09001 * 109.46966 * 65.00241 * 7 4 3 42 42 H 1.09000 * 109.47588 * 89.99975 * 11 10 8 43 43 H 1.08998 * 109.46869 * 210.00194 * 11 10 8 44 44 H 1.08999 * 109.46806 * 330.00142 * 11 10 8 45 45 H 1.09007 * 109.47257 * 209.99708 * 12 10 8 46 46 H 1.08994 * 109.47542 * 330.00354 * 12 10 8 47 47 H 1.08997 * 114.17197 * 254.42957 * 15 13 12 48 48 H 1.09001 * 114.17330 * 27.14587 * 15 13 12 49 49 H 1.08997 * 113.47784 * 219.20678 * 16 15 13 50 50 H 1.08998 * 113.53199 * 88.74851 * 16 15 13 51 51 H 1.09006 * 109.46556 * 289.99704 * 18 17 13 52 52 H 1.08999 * 109.47583 * 49.99179 * 18 17 13 53 53 H 0.96998 * 120.00422 * 359.97438 * 21 19 18 54 54 H 0.96996 * 120.00410 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 6 4.0805 0.8325 1.3065 7 6 4.0800 2.8794 -0.1264 8 6 5.5818 2.8703 -0.2505 9 8 6.1849 1.8182 -0.2390 10 7 6.2549 4.0316 -0.3732 11 6 5.5265 5.3026 -0.3854 12 6 7.7149 4.0227 -0.4933 13 6 8.1045 3.9368 -1.9704 14 1 7.9742 4.8826 -2.4964 15 6 9.4768 3.2896 -2.2042 16 6 8.7737 2.6394 -3.4040 17 7 7.5025 2.7870 -2.6709 18 6 6.4246 3.2231 -3.5686 19 6 6.0014 2.0705 -4.4423 20 8 6.5446 0.9920 -4.3287 21 7 5.0193 2.2381 -5.3500 22 6 4.6347 1.1896 -6.1453 23 1 5.1184 0.2293 -6.0441 24 6 3.6218 1.3623 -7.0807 25 7 3.2528 0.3572 -7.8426 26 14 2.7847 3.0231 -7.2552 27 1 3.5118 3.8408 -8.2592 28 1 1.3816 2.8259 -7.6997 29 1 2.7953 3.7228 -5.9455 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7171 -0.1912 1.3961 38 1 5.1705 0.8328 1.3062 39 1 3.7175 1.4219 2.1485 40 1 3.6451 3.3431 -1.0117 41 1 3.7920 3.4459 0.7592 42 1 5.4311 5.6766 0.6340 43 1 6.0720 6.0281 -0.9890 44 1 4.5346 5.1488 -0.8103 45 1 8.1204 4.9387 -0.0633 46 1 8.1181 3.1617 0.0395 47 1 10.2624 3.9947 -2.4757 48 1 9.7766 2.5859 -1.4276 49 1 9.0632 1.6013 -3.5667 50 1 8.8223 3.2380 -4.3136 51 1 5.5740 3.5620 -2.9771 52 1 6.7813 4.0414 -4.1941 53 1 4.5846 3.1005 -5.4407 54 1 2.5455 0.4776 -8.4953 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231132592.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:30 Heat of formation + Delta-G solvation = -67.772795 kcal Electronic energy + Delta-G solvation = -31936.465221 eV Core-core repulsion = 27908.282776 eV Total energy + Delta-G solvation = -4028.182446 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.70004 -40.55568 -39.65390 -37.69747 -36.25145 -35.99921 -33.81399 -33.62027 -32.19764 -30.41426 -28.49394 -27.64832 -27.46753 -27.00475 -25.17989 -24.34764 -22.72930 -21.35252 -21.06430 -20.57597 -20.31284 -19.77269 -17.87485 -17.77801 -17.20860 -17.06917 -16.84943 -16.58070 -16.34735 -16.00525 -15.58220 -15.36726 -15.07893 -14.76750 -14.71746 -14.45267 -14.36967 -14.05990 -14.02011 -13.80814 -13.70608 -13.20906 -13.09664 -13.02281 -12.90247 -12.84119 -12.56025 -12.52735 -12.46519 -12.36147 -12.27853 -12.02546 -11.92235 -11.82173 -11.61594 -11.57901 -11.49595 -11.44805 -11.29652 -10.47559 -10.39253 -10.28164 -9.73632 -9.27527 -8.43955 -6.05305 1.24830 1.31690 1.40837 1.91502 1.94612 2.19879 2.21636 2.70154 3.10984 3.22686 3.56849 3.71494 3.80881 3.85049 3.95513 4.07385 4.17030 4.22421 4.24275 4.27645 4.32621 4.36663 4.42276 4.42835 4.48884 4.55711 4.63941 4.69036 4.71905 4.77129 4.82575 4.85631 4.90200 4.96019 4.98135 5.01852 5.03628 5.06054 5.18028 5.24342 5.26664 5.28342 5.40711 5.44456 5.51195 5.53882 5.57483 5.83684 5.89304 6.15617 6.56753 6.63147 6.85136 7.35243 7.54002 7.94286 8.74298 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.006628 B = 0.005215 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4223.339814 B = 5367.402265 C = 8269.233089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C -0.105 4.105 4 C -0.078 4.078 5 H 0.026 0.974 6 C -0.141 4.141 7 C -0.129 4.129 8 C 0.502 3.498 9 O -0.555 6.555 10 N -0.619 5.619 11 C 0.070 3.930 12 C 0.137 3.863 13 C 0.012 3.988 14 H 0.103 0.897 15 C -0.115 4.115 16 C -0.003 4.003 17 N -0.455 5.455 18 C 0.029 3.971 19 C 0.450 3.550 20 O -0.609 6.609 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.048 0.952 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.965 3.035 27 H -0.254 1.254 28 H -0.272 1.272 29 H -0.231 1.231 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.121 0.879 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.117 0.883 46 H 0.059 0.941 47 H 0.109 0.891 48 H 0.084 0.916 49 H 0.045 0.955 50 H 0.069 0.931 51 H 0.099 0.901 52 H 0.084 0.916 53 H 0.388 0.612 54 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.716 20.104 19.940 28.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.142 4.142 4 C -0.097 4.097 5 H 0.045 0.955 6 C -0.198 4.198 7 C -0.168 4.168 8 C 0.291 3.709 9 O -0.432 6.432 10 N -0.353 5.353 11 C -0.071 4.071 12 C 0.014 3.986 13 C -0.098 4.098 14 H 0.120 0.880 15 C -0.153 4.153 16 C -0.132 4.132 17 N -0.177 5.177 18 C -0.103 4.103 19 C 0.238 3.762 20 O -0.492 6.492 21 N -0.233 5.233 22 C -0.457 4.457 23 H 0.066 0.934 24 C -0.213 4.213 25 N -0.576 5.576 26 Si 0.785 3.215 27 H -0.178 1.178 28 H -0.197 1.197 29 H -0.154 1.154 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.139 0.861 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.135 0.865 46 H 0.078 0.922 47 H 0.127 0.873 48 H 0.103 0.897 49 H 0.064 0.936 50 H 0.087 0.913 51 H 0.117 0.883 52 H 0.101 0.899 53 H 0.223 0.777 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.944 18.176 20.236 27.216 hybrid contribution -0.326 0.215 -1.641 1.687 sum 0.619 18.390 18.595 26.160 Atomic orbital electron populations 1.21743 0.94652 1.01848 1.02243 1.21593 0.96804 0.97350 1.01139 1.21603 0.93102 0.96778 1.02750 1.20837 0.95759 0.95006 0.98069 0.95508 1.21854 1.01158 1.00411 0.96403 1.21776 0.91184 0.98680 1.05185 1.21024 0.90778 0.83436 0.75658 1.90718 1.70952 1.32103 1.49419 1.47857 1.07156 1.06900 1.73349 1.22061 0.97596 0.84139 1.03343 1.21443 0.80085 1.03369 0.93734 1.24033 0.94226 0.94281 0.97265 0.87974 1.23071 0.95921 0.99554 0.96713 1.23642 0.91666 1.00721 0.97213 1.68979 1.02092 1.29119 1.17551 1.22346 0.98738 0.93936 0.95235 1.20881 0.81883 0.90725 0.82702 1.90558 1.57638 1.29940 1.71097 1.42005 1.34658 1.12107 1.34563 1.18948 1.19041 0.92217 1.15514 0.93384 1.26141 0.97058 1.03365 0.94772 1.69812 1.30678 1.33976 1.23121 0.85370 0.78401 0.77074 0.80704 1.17845 1.19666 1.15443 0.93153 0.92813 0.91070 0.94890 0.91425 0.89364 0.92299 0.93367 0.93516 0.91109 0.88632 0.86061 0.90733 0.89326 0.90617 0.86476 0.92224 0.87268 0.89739 0.93643 0.91288 0.88254 0.89861 0.77661 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.91 71.98 0.71 -2.26 16 2 C -0.13 -3.21 5.69 30.59 0.17 -3.04 16 3 C -0.10 -2.34 4.68 30.59 0.14 -2.20 16 4 C -0.08 -2.14 2.04 -10.79 -0.02 -2.16 16 5 H 0.03 1.03 7.95 -2.39 -0.02 1.01 16 6 C -0.14 -3.70 8.69 71.98 0.63 -3.08 16 7 C -0.13 -2.83 3.73 29.85 0.11 -2.72 16 8 C 0.50 13.96 6.49 87.66 0.57 14.52 16 9 O -0.55 -21.66 12.98 -3.02 -0.04 -21.70 16 10 N -0.62 -12.05 2.74 -846.75 -2.32 -14.37 16 11 C 0.07 0.68 10.24 127.77 1.31 1.99 16 12 C 0.14 2.58 5.58 86.38 0.48 3.06 16 13 C 0.01 0.25 3.37 42.20 0.14 0.40 16 14 H 0.10 1.60 7.77 -2.39 -0.02 1.58 16 15 C -0.11 -2.46 8.00 30.94 0.25 -2.22 16 16 C 0.00 -0.10 6.71 83.58 0.56 0.46 16 17 N -0.45 -15.42 4.66 -906.57 -4.23 -19.65 16 18 C 0.03 1.01 5.31 85.56 0.45 1.46 16 19 C 0.45 22.36 7.62 87.66 0.67 23.03 16 20 O -0.61 -37.46 15.34 -3.06 -0.05 -37.51 16 21 N -0.59 -29.65 5.09 -306.99 -1.56 -31.21 16 22 C -0.33 -20.18 10.16 84.04 0.85 -19.32 16 23 H 0.05 3.55 7.39 -2.91 -0.02 3.53 16 24 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 25 N -0.94 -58.01 13.96 21.66 0.30 -57.71 16 26 Si 0.97 39.46 27.74 68.60 1.90 41.37 16 27 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 28 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 29 H -0.23 -7.91 6.52 99.48 0.65 -7.27 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.56 6.57 -2.39 -0.02 1.54 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 1.26 6.57 -2.39 -0.02 1.25 16 38 H 0.05 1.49 5.95 -2.38 -0.01 1.48 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.10 1.94 7.40 -2.39 -0.02 1.92 16 41 H 0.12 1.76 8.11 -2.39 -0.02 1.74 16 42 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.09 0.53 8.07 -2.39 -0.02 0.51 16 44 H 0.08 0.68 6.44 -2.39 -0.02 0.67 16 45 H 0.12 1.20 8.07 -2.38 -0.02 1.18 16 46 H 0.06 1.50 7.15 -2.39 -0.02 1.48 16 47 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.08 1.99 7.94 -2.39 -0.02 1.97 16 49 H 0.04 1.83 8.13 -2.39 -0.02 1.81 16 50 H 0.07 2.06 7.70 -2.39 -0.02 2.04 16 51 H 0.10 3.05 7.68 -2.38 -0.02 3.04 16 52 H 0.08 2.30 7.56 -2.39 -0.02 2.28 16 53 H 0.39 16.01 5.76 -92.71 -0.53 15.48 16 54 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -91.73 420.76 1.79 -89.94 By element: Atomic # 1 Polarization: 43.01 SS G_CDS: 0.28 Total: 43.29 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 7.50 Total: 7.54 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -7.81 Total: -122.94 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: -0.09 Total: -59.21 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 1.90 Total: 41.37 kcal Total: -91.73 1.79 -89.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231132592.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.169 kcal (2) G-P(sol) polarization free energy of solvation -91.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds