Wall clock time and date at job start Tue Mar 31 2020 22:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46911 * 2 1 4 4 C 1.53005 * 109.47520 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46873 * 305.00659 * 4 3 2 6 6 C 1.52994 * 109.47711 * 184.99997 * 4 3 2 7 7 N 1.46501 * 109.46608 * 64.99533 * 4 3 2 8 8 C 1.46761 * 124.35223 * 240.00118 * 7 4 3 9 9 C 1.54480 * 105.47460 * 163.01192 * 8 7 4 10 10 H 1.09003 * 110.96672 * 267.26259 * 9 8 7 11 11 C 1.50695 * 110.97132 * 143.53734 * 9 8 7 12 12 O 1.21281 * 120.00124 * 349.18179 * 11 9 8 13 13 N 1.34777 * 120.00295 * 169.18932 * 11 9 8 14 14 C 1.46501 * 119.99748 * 5.44408 * 13 11 9 15 15 C 1.46496 * 120.00294 * 185.44979 * 13 11 9 16 16 C 1.52999 * 109.47094 * 269.99570 * 15 13 11 17 17 N 1.46502 * 109.47376 * 179.97438 * 16 15 13 18 18 C 1.46500 * 120.00030 * 90.00056 * 17 16 15 19 19 C 1.36938 * 119.99801 * 269.99886 * 17 16 15 20 20 H 1.08004 * 119.99797 * 23.85152 * 19 17 16 21 21 C 1.38810 * 120.00021 * 203.84425 * 19 17 16 22 22 N 1.31621 * 119.99733 * 15.22048 * 21 19 17 23 23 Si 1.86794 * 120.00197 * 195.22790 * 21 19 17 24 24 H 1.48504 * 109.47307 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47315 * 119.99841 * 23 21 19 26 26 H 1.48504 * 109.46999 * 239.99992 * 23 21 19 27 27 C 1.54633 * 101.76548 * 25.41558 * 9 8 7 28 28 C 1.34424 * 124.34814 * 60.03546 * 7 4 3 29 29 O 1.21279 * 124.93970 * 0.37551 * 28 7 4 30 30 H 1.08999 * 109.47081 * 60.00416 * 1 2 3 31 31 H 1.09000 * 109.47110 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47125 * 299.99779 * 1 2 3 33 33 H 1.09001 * 109.46882 * 240.00284 * 2 1 3 34 34 H 1.08993 * 109.47114 * 120.00027 * 2 1 3 35 35 H 1.09004 * 109.47398 * 59.99992 * 3 2 1 36 36 H 1.09001 * 109.47451 * 300.00219 * 3 2 1 37 37 H 1.09007 * 109.46793 * 300.00456 * 6 4 3 38 38 H 1.08999 * 109.46899 * 59.99540 * 6 4 3 39 39 H 1.09000 * 109.47201 * 179.97438 * 6 4 3 40 40 H 1.08995 * 110.24624 * 44.01044 * 8 7 4 41 41 H 1.08998 * 110.31927 * 282.04679 * 8 7 4 42 42 H 1.08996 * 109.47302 * 268.03201 * 14 13 11 43 43 H 1.08996 * 109.47149 * 28.03363 * 14 13 11 44 44 H 1.08998 * 109.47271 * 148.03064 * 14 13 11 45 45 H 1.09000 * 109.47290 * 149.99667 * 15 13 11 46 46 H 1.09003 * 109.47556 * 29.99526 * 15 13 11 47 47 H 1.09002 * 109.47397 * 300.00258 * 16 15 13 48 48 H 1.09000 * 109.46973 * 59.99903 * 16 15 13 49 49 H 1.09001 * 109.47096 * 94.01198 * 18 17 16 50 50 H 1.08993 * 109.46910 * 214.01331 * 18 17 16 51 51 H 1.09001 * 109.46981 * 334.01500 * 18 17 16 52 52 H 0.97004 * 119.99831 * 179.97438 * 22 21 19 53 53 H 1.09000 * 110.48411 * 93.88085 * 27 9 8 54 54 H 1.09003 * 110.48557 * 216.52866 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0799 2.8796 0.1264 7 7 4.0588 0.8586 -1.2509 8 6 4.9061 -0.3370 -1.3315 9 6 4.8025 -0.8176 -2.7959 10 1 4.0097 -1.5571 -2.9085 11 6 6.1206 -1.3665 -3.2780 12 8 7.1228 -1.2080 -2.6137 13 7 6.1857 -2.0333 -4.4474 14 6 5.0027 -2.1221 -5.3069 15 6 7.4395 -2.6695 -4.8590 16 6 8.2720 -1.6767 -5.6727 17 7 9.5261 -2.3127 -6.0839 18 6 9.5974 -3.0379 -7.3548 19 6 10.6317 -2.2293 -5.2802 20 1 10.5170 -2.0558 -4.2203 21 6 11.8998 -2.3677 -5.8276 22 7 12.0676 -2.2788 -7.1300 23 14 13.3680 -2.6804 -4.7159 24 1 12.9157 -2.7368 -3.3026 25 1 14.0022 -3.9715 -5.0850 26 1 14.3534 -1.5811 -4.8764 27 6 4.4460 0.4938 -3.5337 28 6 3.7894 1.3494 -2.4730 29 8 3.1175 2.3349 -2.6931 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.7168 3.4689 -0.7157 38 1 3.7161 3.3140 1.0575 39 1 5.1699 2.8796 0.1273 40 1 4.5368 -1.1073 -0.6546 41 1 5.9387 -0.0861 -1.0890 42 1 4.4458 -3.0276 -5.0661 43 1 4.3683 -1.2510 -5.1429 44 1 5.3137 -2.1536 -6.3511 45 1 7.2193 -3.5452 -5.4695 46 1 7.9996 -2.9745 -3.9750 47 1 7.7120 -1.3717 -6.5568 48 1 8.4922 -0.8011 -5.0622 49 1 9.9655 -2.3703 -8.1339 50 1 10.2754 -3.8851 -7.2521 51 1 8.6044 -3.3977 -7.6240 52 1 12.9537 -2.3752 -7.5126 53 1 5.3477 0.9772 -3.9096 54 1 3.7499 0.2957 -4.3489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268258849.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:56 Heat of formation + Delta-G solvation = -71.113917 kcal Electronic energy + Delta-G solvation = -30873.878157 eV Core-core repulsion = 26845.550829 eV Total energy + Delta-G solvation = -4028.327327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.07301 -40.56632 -37.91419 -37.59924 -36.63719 -36.40675 -33.92162 -33.39106 -31.33882 -29.94563 -28.77671 -27.90693 -27.59329 -27.47124 -25.72775 -23.73517 -23.40168 -22.37276 -22.13421 -19.97872 -19.95615 -18.78318 -18.52090 -17.79356 -17.35662 -16.85647 -16.74649 -16.28763 -16.12028 -15.71425 -15.52338 -15.18286 -15.00058 -14.86295 -14.68922 -14.59619 -14.33307 -14.22262 -13.87896 -13.87243 -13.68022 -13.55602 -13.14501 -13.02191 -12.93289 -12.84683 -12.80748 -12.77970 -12.64527 -12.43966 -12.37194 -12.32089 -12.12480 -11.95108 -11.88733 -11.61708 -11.60571 -11.54498 -11.00027 -10.70985 -10.55525 -9.74245 -9.68270 -8.73600 -7.86190 -5.35582 1.42694 1.44157 1.49319 1.55726 1.58703 1.84630 2.11886 2.50433 3.14501 3.26260 3.35643 3.59739 3.73464 3.79363 3.89996 4.03679 4.04688 4.12403 4.22628 4.32278 4.33762 4.41747 4.46218 4.52072 4.59217 4.60673 4.65238 4.71587 4.73746 4.79255 4.80300 4.84322 4.89267 4.92935 5.00116 5.02251 5.03769 5.05024 5.16376 5.22965 5.27725 5.32680 5.32857 5.46612 5.58710 5.64474 5.68931 5.69554 6.11574 6.31520 6.46286 7.13259 7.13873 7.19210 7.84726 8.26286 9.16343 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.002337 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.663797 B =11977.509075 C =12593.983828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.129 4.129 4 C 0.150 3.850 5 H 0.110 0.890 6 C -0.166 4.166 7 N -0.605 5.605 8 C 0.115 3.885 9 C -0.104 4.104 10 H 0.151 0.849 11 C 0.515 3.485 12 O -0.578 6.578 13 N -0.607 5.607 14 C 0.065 3.935 15 C 0.114 3.886 16 C 0.146 3.854 17 N -0.617 5.617 18 C 0.174 3.826 19 C -0.260 4.260 20 H 0.057 0.943 21 C -0.051 4.051 22 N -0.935 5.935 23 Si 0.965 3.035 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.291 1.291 27 C -0.140 4.140 28 C 0.518 3.482 29 O -0.564 6.564 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.020 0.980 49 H 0.003 0.997 50 H 0.016 0.984 51 H 0.042 0.958 52 H 0.250 0.750 53 H 0.094 0.906 54 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.374 1.222 12.491 29.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.167 4.167 4 C 0.048 3.952 5 H 0.128 0.872 6 C -0.224 4.224 7 N -0.338 5.338 8 C -0.008 4.008 9 C -0.126 4.126 10 H 0.169 0.831 11 C 0.303 3.697 12 O -0.458 6.458 13 N -0.339 5.339 14 C -0.076 4.076 15 C -0.012 4.012 16 C 0.019 3.981 17 N -0.341 5.341 18 C 0.030 3.970 19 C -0.391 4.391 20 H 0.075 0.925 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.793 3.207 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.218 1.218 27 C -0.181 4.181 28 C 0.306 3.694 29 O -0.443 6.443 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.128 0.872 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.111 0.889 44 H 0.097 0.903 45 H 0.106 0.894 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.038 0.962 49 H 0.022 0.978 50 H 0.035 0.965 51 H 0.061 0.939 52 H 0.059 0.941 53 H 0.113 0.887 54 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -26.094 1.811 12.691 29.072 hybrid contribution 1.562 0.093 0.105 1.568 sum -24.532 1.904 12.795 27.734 Atomic orbital electron populations 1.21745 0.95581 1.01918 1.01552 1.21472 0.96090 0.95806 1.02216 1.21973 0.93655 0.98213 1.02878 1.21219 0.94446 0.94453 0.85048 0.87178 1.22151 1.00933 0.96384 1.02919 1.48487 1.50106 1.28946 1.06305 1.22055 0.95607 0.87260 0.95849 1.22186 0.95996 0.98585 0.95822 0.83096 1.20714 0.90489 0.77676 0.80778 1.90749 1.38745 1.58722 1.57548 1.47949 1.12798 1.52966 1.20205 1.22232 0.86259 1.04119 0.95022 1.21928 0.84062 0.96284 0.98897 1.21060 0.86688 0.93806 0.96556 1.44092 1.07447 1.60966 1.21617 1.20582 0.96061 0.93970 0.86423 1.19393 0.85499 1.44050 0.90145 0.92469 1.25749 0.99986 1.01767 0.97113 1.70224 1.21854 1.55005 1.11062 0.85247 0.79541 0.77244 0.78699 1.19731 1.21038 1.21784 1.22396 1.03157 0.93888 0.98618 1.20954 0.79250 0.84166 0.85033 1.90682 1.41440 1.27817 1.84407 0.93804 0.92080 0.92308 0.92579 0.90885 0.89640 0.92843 0.93538 0.89445 0.93137 0.87221 0.91191 0.89957 0.88858 0.90284 0.89397 0.93322 0.92731 0.96159 0.97837 0.96529 0.93943 0.94114 0.88733 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 71.98 0.71 -0.93 16 2 C -0.12 -1.35 5.82 30.59 0.18 -1.18 16 3 C -0.13 -1.83 4.64 30.59 0.14 -1.69 16 4 C 0.15 2.28 2.86 44.99 0.13 2.41 16 5 H 0.11 1.22 8.07 -2.39 -0.02 1.20 16 6 C -0.17 -2.89 9.20 71.98 0.66 -2.23 16 7 N -0.61 -10.84 2.28 -794.04 -1.81 -12.65 16 8 C 0.12 1.93 6.74 86.83 0.59 2.52 16 9 C -0.10 -1.66 2.54 -10.48 -0.03 -1.68 16 10 H 0.15 1.29 7.77 -2.39 -0.02 1.27 16 11 C 0.52 13.37 6.87 87.66 0.60 13.97 16 12 O -0.58 -21.37 15.13 -3.03 -0.05 -21.42 16 13 N -0.61 -14.73 2.87 -846.79 -2.43 -17.16 16 14 C 0.06 0.86 10.01 127.77 1.28 2.14 16 15 C 0.11 3.79 5.70 86.38 0.49 4.28 16 16 C 0.15 6.03 5.97 86.38 0.52 6.55 16 17 N -0.62 -31.58 2.92 -726.93 -2.12 -33.70 16 18 C 0.17 8.44 9.00 127.77 1.15 9.59 16 19 C -0.26 -15.01 9.63 84.03 0.81 -14.20 16 20 H 0.06 3.38 7.87 -2.91 -0.02 3.36 16 21 C -0.05 -2.95 5.04 84.86 0.43 -2.52 16 22 N -0.93 -56.39 10.90 21.65 0.24 -56.15 16 23 Si 0.96 46.83 29.58 68.60 2.03 48.86 16 24 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 25 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 27 C -0.14 -2.40 5.59 30.59 0.17 -2.23 16 28 C 0.52 11.36 7.39 87.90 0.65 12.01 16 29 O -0.56 -16.28 15.07 -3.03 -0.05 -16.33 16 30 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.70 7.75 -2.39 -0.02 0.68 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.05 1.08 6.65 -2.39 -0.02 1.06 16 37 H 0.05 1.06 6.77 -2.38 -0.02 1.05 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.60 6.86 -2.39 -0.02 1.58 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.09 0.82 4.86 -2.39 -0.01 0.81 16 44 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 45 H 0.09 2.60 8.07 -2.39 -0.02 2.58 16 46 H 0.05 1.97 7.50 -2.39 -0.02 1.95 16 47 H 0.05 2.00 8.07 -2.39 -0.02 1.98 16 48 H 0.02 0.94 8.04 -2.39 -0.02 0.92 16 49 H 0.00 0.18 7.38 -2.39 -0.02 0.16 16 50 H 0.02 0.85 7.38 -2.39 -0.02 0.83 16 51 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 52 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 53 H 0.09 1.99 7.89 -2.39 -0.02 1.97 16 54 H 0.14 1.57 6.81 -2.39 -0.02 1.55 16 Total: -1.00 -78.57 422.47 5.14 -73.43 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.85 Total: 8.32 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: 8.48 Total: 26.81 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -6.13 Total: -119.67 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -0.09 Total: -37.75 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -78.57 5.14 -73.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268258849.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.318 kcal (2) G-P(sol) polarization free energy of solvation -78.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds