Wall clock time and date at job start Tue Mar 31 2020 22:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46930 * 2 1 4 4 C 1.52998 * 109.46930 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47306 * 54.99702 * 4 3 2 6 6 C 1.52999 * 109.47279 * 294.99806 * 4 3 2 7 7 C 1.50706 * 109.47089 * 175.00200 * 4 3 2 8 8 O 1.21279 * 119.99451 * 15.36162 * 7 4 3 9 9 N 1.34773 * 119.99771 * 195.36226 * 7 4 3 10 10 C 1.46502 * 119.99845 * 184.35812 * 9 7 4 11 11 C 1.52995 * 109.47487 * 275.35800 * 10 9 7 12 12 C 1.46497 * 120.00419 * 4.36383 * 9 7 4 13 13 H 1.09003 * 110.27335 * 352.48062 * 12 9 7 14 14 C 1.54600 * 110.30918 * 230.28622 * 12 9 7 15 15 C 1.54935 * 102.91804 * 219.12502 * 14 12 9 16 16 N 1.48530 * 103.23312 * 37.41598 * 15 14 12 17 17 C 1.46896 * 111.00462 * 200.27807 * 16 15 14 18 18 C 1.50701 * 109.46918 * 287.39504 * 17 16 15 19 19 O 1.21290 * 120.00490 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99547 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99443 * 179.97438 * 20 18 17 22 22 H 1.07990 * 120.00557 * 0.02562 * 21 20 18 23 23 C 1.38960 * 119.99950 * 179.97438 * 21 20 18 24 24 N 1.31404 * 119.99832 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99676 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47281 * 89.99957 * 25 23 21 27 27 H 1.48502 * 109.47120 * 209.99798 * 25 23 21 28 28 H 1.48503 * 109.47278 * 329.99670 * 25 23 21 29 29 C 1.47904 * 105.81666 * 320.79110 * 16 15 14 30 30 H 1.08994 * 109.47433 * 60.00207 * 1 2 3 31 31 H 1.08999 * 109.46576 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47070 * 299.99644 * 1 2 3 33 33 H 1.08995 * 109.47544 * 239.99919 * 2 1 3 34 34 H 1.09011 * 109.47308 * 119.99989 * 2 1 3 35 35 H 1.09003 * 109.46954 * 60.00284 * 3 2 1 36 36 H 1.08994 * 109.46893 * 300.00124 * 3 2 1 37 37 H 1.09006 * 109.46913 * 65.76019 * 6 4 3 38 38 H 1.09001 * 109.47225 * 185.75747 * 6 4 3 39 39 H 1.08996 * 109.47453 * 305.75723 * 6 4 3 40 40 H 1.08993 * 109.47087 * 155.35447 * 10 9 7 41 41 H 1.09004 * 109.46610 * 35.36004 * 10 9 7 42 42 H 1.09002 * 109.47349 * 172.76023 * 11 10 9 43 43 H 1.09001 * 109.47160 * 52.76200 * 11 10 9 44 44 H 1.09000 * 109.47217 * 292.76347 * 11 10 9 45 45 H 1.08996 * 110.71927 * 337.48429 * 14 12 9 46 46 H 1.08997 * 110.72480 * 100.76696 * 14 12 9 47 47 H 1.08997 * 110.67113 * 278.97909 * 15 14 12 48 48 H 1.09002 * 110.80638 * 155.91807 * 15 14 12 49 49 H 1.09006 * 109.47108 * 47.39525 * 17 16 15 50 50 H 1.09005 * 109.47537 * 167.39291 * 17 16 15 51 51 H 0.96996 * 120.00599 * 0.02562 * 20 18 17 52 52 H 0.97003 * 119.99905 * 179.97438 * 24 23 21 53 53 H 1.09001 * 109.91819 * 265.97468 * 29 16 15 54 54 H 1.08999 * 110.08249 * 144.77262 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8530 -0.8409 6 6 4.0794 0.8332 1.3083 7 6 4.0723 2.8580 -0.1231 8 8 3.3194 3.7880 0.0744 9 7 5.3582 3.0902 -0.4533 10 6 5.8712 4.4621 -0.4805 11 6 5.5535 5.0988 -1.8349 12 6 6.2429 1.9707 -0.7852 13 1 5.7426 1.0225 -0.5879 14 6 7.5559 2.0658 0.0253 15 6 8.6292 1.6231 -1.0007 16 7 8.1448 2.2124 -2.2751 17 6 8.7391 1.5280 -3.4311 18 6 10.1907 1.9144 -3.5518 19 8 10.6818 2.6845 -2.7538 20 7 10.9433 1.4042 -4.5467 21 6 12.2637 1.7562 -4.6569 22 1 12.7009 2.4418 -3.9463 23 6 13.0399 1.2298 -5.6823 24 7 14.3054 1.5675 -5.7881 25 14 12.2839 0.0432 -6.9110 26 1 11.7285 0.8055 -8.0580 27 1 13.3263 -0.8954 -7.3986 28 1 11.1957 -0.7240 -6.2531 29 6 6.6747 2.0500 -2.2613 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8901 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 3.8027 -0.2203 1.3503 38 1 5.1645 0.9259 1.3539 39 1 3.6341 1.3597 2.1524 40 1 6.9505 4.4495 -0.3292 41 1 5.3999 5.0420 0.3131 42 1 5.8188 6.1558 -1.8107 43 1 4.4886 4.9962 -2.0438 44 1 6.1267 4.5981 -2.6152 45 1 7.7340 3.0903 0.3521 46 1 7.5334 1.3865 0.8773 47 1 8.6696 0.5361 -1.0704 48 1 9.6067 2.0270 -0.7371 49 1 8.6603 0.4494 -3.2948 50 1 8.2089 1.8193 -4.3379 51 1 10.5506 0.7886 -5.1852 52 1 14.8473 1.1998 -6.5037 53 1 6.3976 1.1318 -2.7792 54 1 6.1992 2.9051 -2.7418 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269314352.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:41 Heat of formation + Delta-G solvation = -91.517594 kcal Electronic energy + Delta-G solvation = -30891.737726 eV Core-core repulsion = 26862.525629 eV Total energy + Delta-G solvation = -4029.212097 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.68179 -40.46716 -39.23251 -37.06990 -36.43772 -35.83579 -33.74276 -33.41373 -32.51683 -31.14347 -29.55317 -28.14812 -27.53518 -25.87559 -25.52099 -23.59760 -22.31664 -22.28954 -21.47054 -21.20810 -20.19681 -19.64337 -18.45159 -17.72266 -17.38133 -16.88908 -16.58503 -16.33699 -16.09164 -15.88846 -15.62844 -15.22819 -14.99005 -14.98185 -14.67294 -14.47910 -14.43550 -14.17530 -13.97206 -13.65263 -13.51418 -13.37380 -13.23388 -13.10817 -13.00262 -12.99731 -12.71519 -12.62342 -12.49970 -12.39490 -12.17656 -12.12445 -11.96400 -11.82674 -11.77250 -11.69513 -11.54822 -11.46093 -11.37251 -10.60424 -10.37759 -10.21208 -9.70550 -9.24434 -8.38934 -5.99276 1.30814 1.37175 1.45554 1.61458 1.94583 2.00883 2.24725 2.68730 3.17136 3.29424 3.41429 3.66472 3.67374 3.80082 3.96486 4.00784 4.12390 4.20234 4.28367 4.33184 4.33680 4.34501 4.38248 4.40141 4.44224 4.51747 4.53456 4.62719 4.69047 4.75223 4.82378 4.86488 4.92626 4.95071 4.97151 5.05312 5.06596 5.11161 5.14665 5.20278 5.26511 5.32295 5.33942 5.45926 5.51581 5.55061 5.56853 5.91531 5.98043 6.06790 6.44632 6.62969 6.92159 7.17693 7.43875 8.02116 8.78806 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017411 B = 0.002307 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.749182 B =12132.189824 C =12846.052091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.096 4.096 4 C -0.108 4.108 5 H 0.115 0.885 6 C -0.143 4.143 7 C 0.514 3.486 8 O -0.581 6.581 9 N -0.596 5.596 10 C 0.112 3.888 11 C -0.160 4.160 12 C 0.131 3.869 13 H 0.133 0.867 14 C -0.127 4.127 15 C 0.040 3.960 16 N -0.515 5.515 17 C 0.046 3.954 18 C 0.453 3.547 19 O -0.606 6.606 20 N -0.595 5.595 21 C -0.324 4.324 22 H 0.054 0.946 23 C -0.018 4.018 24 N -0.937 5.937 25 Si 0.965 3.035 26 H -0.259 1.259 27 H -0.277 1.277 28 H -0.229 1.229 29 C 0.017 3.983 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.059 0.941 48 H 0.057 0.943 49 H 0.086 0.914 50 H 0.115 0.885 51 H 0.389 0.611 52 H 0.278 0.722 53 H 0.077 0.923 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.302 -8.990 9.946 30.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.134 4.134 4 C -0.129 4.129 5 H 0.133 0.867 6 C -0.201 4.201 7 C 0.304 3.696 8 O -0.460 6.460 9 N -0.327 5.327 10 C -0.011 4.011 11 C -0.218 4.218 12 C 0.027 3.973 13 H 0.151 0.849 14 C -0.165 4.165 15 C -0.088 4.088 16 N -0.240 5.240 17 C -0.085 4.085 18 C 0.241 3.759 19 O -0.489 6.489 20 N -0.237 5.237 21 C -0.453 4.453 22 H 0.072 0.928 23 C -0.217 4.217 24 N -0.578 5.578 25 Si 0.785 3.215 26 H -0.184 1.184 27 H -0.202 1.202 28 H -0.152 1.152 29 C -0.111 4.111 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.121 0.879 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.104 0.896 50 H 0.133 0.867 51 H 0.224 0.776 52 H 0.087 0.913 53 H 0.096 0.904 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -27.027 -7.428 10.447 29.913 hybrid contribution 0.490 -0.633 -0.928 1.225 sum -26.537 -8.061 9.520 29.323 Atomic orbital electron populations 1.21782 0.95931 1.02019 1.01522 1.21571 0.95899 0.95158 1.03140 1.21391 0.92425 0.97796 1.01834 1.21438 0.97575 0.91645 1.02260 0.86710 1.21873 1.01623 1.02290 0.94280 1.21320 0.80989 0.92467 0.74806 1.90666 1.56054 1.47375 1.51951 1.48086 1.10103 1.07266 1.67286 1.21356 0.99821 0.81980 0.97900 1.22123 1.00945 1.01167 0.97546 1.22280 0.90984 0.90471 0.93577 0.84948 1.22894 0.92497 1.03186 0.97932 1.23176 0.98842 0.97591 0.89152 1.64330 1.04633 1.53670 1.01372 1.22019 0.90955 0.98631 0.96936 1.20912 0.89432 0.83424 0.82163 1.90539 1.75042 1.38909 1.44431 1.42043 1.09545 1.43738 1.28378 1.18972 0.85859 1.26975 1.13538 0.92785 1.26127 0.95649 1.00068 0.99814 1.69809 1.08120 1.45694 1.34134 0.85360 0.79335 0.78294 0.78483 1.18396 1.20206 1.15190 1.23530 0.87575 1.02919 0.97120 0.93265 0.91768 0.93161 0.90951 0.90543 0.92772 0.93153 0.88892 0.91368 0.92997 0.89596 0.91630 0.91514 0.93624 0.91946 0.90940 0.87920 0.92312 0.92418 0.89586 0.86658 0.77586 0.91268 0.90437 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.91 71.98 0.71 -0.84 16 2 C -0.12 -1.12 5.69 30.60 0.17 -0.95 16 3 C -0.10 -1.38 4.01 30.60 0.12 -1.25 16 4 C -0.11 -1.39 1.85 -11.54 -0.02 -1.41 16 5 H 0.12 0.99 6.86 -2.39 -0.02 0.98 16 6 C -0.14 -1.36 8.42 71.98 0.61 -0.76 16 7 C 0.51 10.58 6.83 87.66 0.60 11.18 16 8 O -0.58 -16.80 15.74 -3.03 -0.05 -16.85 16 9 N -0.60 -11.25 2.40 -792.96 -1.91 -13.15 16 10 C 0.11 2.45 5.54 86.38 0.48 2.93 16 11 C -0.16 -3.58 9.69 71.98 0.70 -2.88 16 12 C 0.13 1.99 2.53 45.87 0.12 2.11 16 13 H 0.13 1.24 4.80 -2.39 -0.01 1.23 16 14 C -0.13 -2.28 6.56 31.80 0.21 -2.07 16 15 C 0.04 1.02 5.94 86.65 0.51 1.53 16 16 N -0.52 -13.81 4.90 -887.57 -4.35 -18.16 16 17 C 0.05 1.30 5.19 85.56 0.44 1.74 16 18 C 0.45 19.70 7.61 87.66 0.67 20.37 16 19 O -0.61 -32.64 14.64 -3.06 -0.04 -32.68 16 20 N -0.59 -27.30 5.09 -306.98 -1.56 -28.86 16 21 C -0.32 -18.75 10.16 84.04 0.85 -17.89 16 22 H 0.05 3.74 7.39 -2.92 -0.02 3.72 16 23 C -0.02 -1.01 5.50 84.93 0.47 -0.54 16 24 N -0.94 -56.28 13.96 21.67 0.30 -55.98 16 25 Si 0.97 38.15 27.74 68.60 1.90 40.05 16 26 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 27 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 28 H -0.23 -7.44 6.52 99.48 0.65 -6.79 16 29 C 0.02 0.31 6.20 86.45 0.54 0.84 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 0.55 6.70 -2.38 -0.02 0.54 16 35 H 0.05 0.95 8.09 -2.39 -0.02 0.93 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 0.50 6.85 -2.38 -0.02 0.48 16 38 H 0.07 0.59 6.74 -2.39 -0.02 0.58 16 39 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.09 1.94 5.90 -2.39 -0.01 1.93 16 41 H 0.07 1.55 7.66 -2.38 -0.02 1.53 16 42 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.04 1.10 8.08 -2.39 -0.02 1.08 16 44 H 0.06 1.45 5.93 -2.39 -0.01 1.44 16 45 H 0.07 1.54 5.80 -2.39 -0.01 1.52 16 46 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.06 1.27 7.81 -2.39 -0.02 1.25 16 48 H 0.06 1.98 7.10 -2.39 -0.02 1.97 16 49 H 0.09 1.89 7.83 -2.38 -0.02 1.88 16 50 H 0.12 2.70 8.08 -2.38 -0.02 2.68 16 51 H 0.39 14.63 5.76 -92.71 -0.53 14.10 16 52 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 53 H 0.08 1.03 7.77 -2.39 -0.02 1.01 16 54 H 0.08 1.73 4.99 -2.39 -0.01 1.71 16 Total: -1.00 -80.11 410.43 1.77 -78.34 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 0.30 Total: 35.19 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 7.18 Total: 12.10 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -7.52 Total: -116.15 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.09 Total: -49.54 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 1.90 Total: 40.05 kcal Total: -80.11 1.77 -78.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269314352.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.176 kcal (2) G-P(sol) polarization free energy of solvation -80.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds