Wall clock time and date at job start Tue Mar 31 2020 23:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21286 * 119.99535 * 2 1 4 4 N 1.34770 * 119.99818 * 179.97438 * 2 1 3 5 5 C 1.46504 * 119.99540 * 180.02562 * 4 2 1 6 6 H 1.08995 * 109.47465 * 34.99970 * 5 4 2 7 7 C 1.50704 * 109.46952 * 155.00187 * 5 4 2 8 8 O 1.21283 * 119.99900 * 20.97253 * 7 5 4 9 9 N 1.34777 * 119.99833 * 200.97845 * 7 5 4 10 10 C 1.46504 * 119.99923 * 184.88213 * 9 7 5 11 11 C 1.52995 * 109.47207 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.49754 * 59.99489 * 11 10 9 13 13 C 1.53041 * 109.52468 * 180.02562 * 11 10 9 14 14 C 1.53040 * 109.53505 * 181.33254 * 13 11 10 15 15 C 1.53182 * 109.31291 * 298.62928 * 14 13 11 16 16 N 1.46932 * 108.77455 * 54.64108 * 15 14 13 17 17 C 1.36936 * 120.63113 * 126.41459 * 16 15 14 18 18 H 1.08000 * 119.99577 * 209.82313 * 17 16 15 19 19 C 1.38810 * 120.00146 * 29.81710 * 17 16 15 20 20 N 1.31624 * 120.00002 * 16.55941 * 19 17 16 21 21 Si 1.86800 * 120.00152 * 196.55560 * 19 17 16 22 22 H 1.48501 * 109.47102 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47309 * 120.00013 * 21 19 17 24 24 H 1.48495 * 109.47564 * 240.00168 * 21 19 17 25 25 C 1.46918 * 118.73569 * 306.38641 * 16 15 14 26 26 C 1.52994 * 109.46980 * 274.99686 * 5 4 2 27 27 C 1.53000 * 109.47483 * 300.38800 * 26 5 4 28 28 C 1.52998 * 109.47191 * 60.38701 * 26 5 4 29 29 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47137 * 300.00604 * 1 2 3 31 31 H 1.09007 * 109.46645 * 60.00404 * 1 2 3 32 32 H 0.97004 * 120.00348 * 0.02562 * 4 2 1 33 33 H 0.96998 * 120.00372 * 4.87116 * 9 7 5 34 34 H 1.08995 * 109.47180 * 59.99114 * 10 9 7 35 35 H 1.09003 * 109.46917 * 299.99846 * 10 9 7 36 36 H 1.08992 * 109.46846 * 299.93772 * 12 11 10 37 37 H 1.08994 * 109.46888 * 179.97438 * 12 11 10 38 38 H 1.08999 * 109.46841 * 59.94189 * 12 11 10 39 39 H 1.08997 * 109.45619 * 301.34906 * 13 11 10 40 40 H 1.09001 * 109.46069 * 61.30815 * 13 11 10 41 41 H 1.09009 * 109.49244 * 178.67946 * 14 13 11 42 42 H 1.09001 * 109.50157 * 58.58916 * 14 13 11 43 43 H 1.09002 * 109.59144 * 294.85202 * 15 14 13 44 44 H 1.09006 * 109.58958 * 174.42668 * 15 14 13 45 45 H 0.97004 * 119.99549 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.59074 * 293.82329 * 25 16 15 47 47 H 1.09002 * 109.58601 * 173.39743 * 25 16 15 48 48 H 1.09001 * 109.47411 * 180.38948 * 26 5 4 49 49 H 1.08999 * 109.47057 * 60.00073 * 27 26 5 50 50 H 1.09002 * 109.47375 * 179.97438 * 27 26 5 51 51 H 1.09002 * 109.47222 * 300.00054 * 27 26 5 52 52 H 1.09000 * 109.47011 * 54.15825 * 28 26 5 53 53 H 1.09001 * 109.47670 * 174.15493 * 28 26 5 54 54 H 1.08994 * 109.47480 * 294.16049 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 1 4.0091 -0.3252 0.5904 7 6 4.1481 -2.4547 0.6020 8 8 3.4255 -3.4280 0.6410 9 7 5.4000 -2.5245 1.0962 10 6 5.9254 -3.8028 1.5825 11 6 7.3570 -3.6076 2.0855 12 6 7.3630 -2.5871 3.2256 13 6 7.9072 -4.9424 2.5932 14 6 9.3273 -4.7407 3.1270 15 6 10.2296 -4.2461 1.9923 16 7 9.6301 -3.0414 1.4022 17 6 10.3560 -1.8861 1.2860 18 1 9.8573 -0.9289 1.3233 19 6 11.7329 -1.9453 1.1202 20 7 12.3035 -3.0725 0.7510 21 14 12.7761 -0.4252 1.4210 22 1 11.9005 0.7042 1.8245 23 1 13.7552 -0.7028 2.5026 24 1 13.5022 -0.0687 0.1757 25 6 8.2371 -3.1000 0.9389 26 6 4.1564 -1.0418 -1.4357 27 6 3.6389 -2.2185 -2.2654 28 6 3.6546 0.2700 -2.0427 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6959 -2.0073 0.0005 33 1 5.9533 -1.7285 1.1299 34 1 5.9219 -4.5296 0.7702 35 1 5.2998 -4.1661 2.3978 36 1 6.9734 -1.6357 2.8636 37 1 8.3831 -2.4488 3.5839 38 1 6.7370 -2.9497 4.0409 39 1 7.2686 -5.3178 3.3927 40 1 7.9256 -5.6623 1.7750 41 1 9.7097 -5.6870 3.5099 42 1 9.3132 -4.0024 3.9288 43 1 10.3173 -5.0211 1.2308 44 1 11.2166 -4.0067 2.3881 45 1 13.2657 -3.1138 0.6349 46 1 8.1622 -3.7816 0.0915 47 1 7.9093 -2.1044 0.6398 48 1 5.2464 -1.0486 -1.4360 49 1 2.5489 -2.2116 -2.2652 50 1 4.0022 -2.1289 -3.2892 51 1 3.9964 -3.1530 -1.8331 52 1 3.9354 1.1007 -1.3953 53 1 4.1015 0.4094 -3.0270 54 1 2.5694 0.2345 -2.1381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271007130.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:37 Heat of formation + Delta-G solvation = -91.539728 kcal Electronic energy + Delta-G solvation = -31718.386170 eV Core-core repulsion = 27689.173113 eV Total energy + Delta-G solvation = -4029.213057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.78138 -40.55421 -39.67570 -37.09866 -36.42103 -34.83058 -34.18459 -32.53258 -32.23109 -30.85127 -28.66314 -28.07254 -27.82409 -27.20038 -26.19931 -23.86316 -22.55258 -22.20388 -21.57511 -20.66770 -19.55193 -18.73171 -18.46712 -17.81260 -17.14930 -17.06820 -16.76695 -16.40142 -16.10003 -15.67706 -15.44792 -15.31908 -15.28942 -14.87808 -14.67639 -14.61197 -14.34758 -14.19304 -13.79401 -13.59479 -13.34162 -13.29697 -13.18239 -13.13654 -12.97633 -12.81785 -12.76156 -12.54432 -12.37959 -12.25684 -12.14626 -12.08503 -11.94034 -11.85498 -11.74494 -11.43626 -11.23629 -10.97827 -10.92092 -10.87000 -10.51022 -10.12295 -10.05659 -8.60628 -7.84730 -5.30844 1.44784 1.45800 1.49064 1.58040 1.66815 1.87357 2.50622 2.52196 3.30688 3.51578 3.61987 3.73794 3.88553 3.92612 3.96793 3.98245 3.99232 4.15911 4.39420 4.42230 4.48002 4.54744 4.59129 4.60291 4.69314 4.72774 4.76380 4.77246 4.83361 4.90705 4.94847 4.95726 5.01790 5.06638 5.11631 5.12066 5.16287 5.22695 5.28091 5.33388 5.38235 5.40179 5.40560 5.45265 5.53160 5.63956 5.70574 5.81955 6.41075 6.44454 6.55433 7.07798 7.18303 7.25773 7.89481 8.42265 9.21364 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.002958 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.652079 B = 9465.060979 C =10527.191469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.508 3.492 3 O -0.581 6.581 4 N -0.705 5.705 5 C 0.134 3.866 6 H 0.103 0.897 7 C 0.518 3.482 8 O -0.563 6.563 9 N -0.712 5.712 10 C 0.144 3.856 11 C -0.079 4.079 12 C -0.124 4.124 13 C -0.092 4.092 14 C -0.132 4.132 15 C 0.176 3.824 16 N -0.601 5.601 17 C -0.252 4.252 18 H 0.068 0.932 19 C -0.050 4.050 20 N -0.935 5.935 21 Si 0.959 3.041 22 H -0.265 1.265 23 H -0.293 1.293 24 H -0.296 1.296 25 C 0.160 3.840 26 C -0.099 4.099 27 C -0.141 4.141 28 C -0.128 4.128 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.415 0.585 33 H 0.409 0.591 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.059 0.941 43 H -0.009 1.009 44 H 0.046 0.954 45 H 0.247 0.753 46 H 0.004 0.996 47 H 0.054 0.946 48 H 0.083 0.917 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.043 0.957 52 H 0.053 0.947 53 H 0.059 0.941 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.861 1.159 -0.049 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.297 3.703 3 O -0.461 6.461 4 N -0.359 5.359 5 C 0.025 3.975 6 H 0.121 0.879 7 C 0.304 3.696 8 O -0.442 6.442 9 N -0.364 5.364 10 C 0.020 3.980 11 C -0.081 4.081 12 C -0.182 4.182 13 C -0.130 4.130 14 C -0.171 4.171 15 C 0.050 3.950 16 N -0.323 5.323 17 C -0.382 4.382 18 H 0.086 0.914 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.788 3.212 22 H -0.189 1.189 23 H -0.220 1.220 24 H -0.223 1.223 25 C 0.034 3.966 26 C -0.119 4.119 27 C -0.199 4.199 28 C -0.185 4.185 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.254 0.746 33 H 0.246 0.754 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.009 0.991 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.022 0.978 47 H 0.073 0.927 48 H 0.102 0.898 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.063 0.937 52 H 0.072 0.928 53 H 0.078 0.922 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.780 1.178 -0.054 22.811 hybrid contribution 1.491 0.471 -0.124 1.568 sum -21.290 1.649 -0.177 21.354 Atomic orbital electron populations 1.21876 0.88234 1.06087 1.06124 1.21487 0.92105 0.82545 0.74168 1.90727 1.71544 1.32585 1.51293 1.45895 1.05134 1.10041 1.74852 1.20798 0.83174 0.95642 0.97884 0.87885 1.20624 0.81836 0.89908 0.77249 1.90660 1.56484 1.38783 1.58310 1.46026 1.14725 1.13153 1.62467 1.21291 0.92998 0.84802 0.98864 1.21148 0.92867 0.97155 0.96939 1.21695 1.01767 0.97583 0.97127 1.21347 0.95903 0.95312 1.00421 1.22048 0.96071 1.00353 0.98601 1.20570 0.95538 0.86875 0.91989 1.44165 1.09249 1.09582 1.69339 1.19478 0.89730 0.86385 1.42639 0.91437 1.25769 0.99250 0.99167 1.00324 1.70195 1.09524 1.27543 1.50898 0.85323 0.78873 0.80209 0.76747 1.18891 1.22041 1.22322 1.20990 0.84518 0.98070 0.92975 1.21450 1.00953 0.97104 0.92345 1.21776 1.01697 0.96473 0.99909 1.21754 1.00764 0.95614 1.00372 0.88324 0.87899 0.87686 0.74648 0.75425 0.92143 0.90717 0.93046 0.93134 0.91937 0.90312 0.92775 0.91653 0.92211 0.99085 0.93523 0.94337 0.97782 0.92729 0.89823 0.91788 0.91696 0.93745 0.92835 0.92209 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 10.39 71.24 0.74 -0.79 16 2 C 0.51 9.25 6.38 87.66 0.56 9.80 16 3 O -0.58 -15.17 14.10 -3.05 -0.04 -15.21 16 4 N -0.70 -12.45 4.16 -446.09 -1.86 -14.31 16 5 C 0.13 2.77 2.40 44.24 0.11 2.87 16 6 H 0.10 2.26 7.58 -2.39 -0.02 2.25 16 7 C 0.52 12.13 5.96 87.66 0.52 12.65 16 8 O -0.56 -15.52 15.59 -3.04 -0.05 -15.57 16 9 N -0.71 -16.50 4.99 -463.06 -2.31 -18.81 16 10 C 0.14 3.61 4.57 86.38 0.40 4.01 16 11 C -0.08 -2.29 0.53 -52.10 -0.03 -2.32 16 12 C -0.12 -3.49 7.81 71.98 0.56 -2.93 16 13 C -0.09 -2.67 4.71 30.62 0.14 -2.53 16 14 C -0.13 -4.60 5.74 30.67 0.18 -4.42 16 15 C 0.18 8.19 5.29 86.36 0.46 8.64 16 16 N -0.60 -28.26 2.42 -699.10 -1.69 -29.95 16 17 C -0.25 -13.18 9.57 84.03 0.80 -12.38 16 18 H 0.07 3.42 7.88 -2.91 -0.02 3.40 16 19 C -0.05 -2.71 4.91 84.86 0.42 -2.30 16 20 N -0.94 -54.73 11.30 21.65 0.24 -54.48 16 21 Si 0.96 44.17 29.58 68.60 2.03 46.20 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 25 C 0.16 6.03 4.94 86.37 0.43 6.45 16 26 C -0.10 -1.98 2.78 -10.80 -0.03 -2.01 16 27 C -0.14 -2.71 8.78 71.98 0.63 -2.08 16 28 C -0.13 -2.62 7.64 71.98 0.55 -2.07 16 29 H 0.10 0.48 7.91 -2.39 -0.02 0.46 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.10 0.80 8.14 -2.38 -0.02 0.79 16 32 H 0.42 6.48 7.58 -92.71 -0.70 5.78 16 33 H 0.41 9.03 6.23 -92.71 -0.58 8.46 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.05 1.34 6.86 -2.39 -0.02 1.32 16 37 H 0.05 1.72 5.97 -2.39 -0.01 1.70 16 38 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.06 2.10 6.33 -2.39 -0.02 2.08 16 43 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H 0.05 2.49 6.18 -2.38 -0.01 2.48 16 45 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 46 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 47 H 0.05 1.96 6.84 -2.39 -0.02 1.95 16 48 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.06 1.11 7.59 -2.39 -0.02 1.09 16 50 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.04 0.99 6.98 -2.39 -0.02 0.97 16 52 H 0.05 1.28 7.17 -2.39 -0.02 1.26 16 53 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 54 H 0.05 1.03 6.29 -2.39 -0.02 1.02 16 Total: -1.00 -67.50 407.44 2.37 -65.13 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.39 Total: 26.39 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 6.43 Total: 10.61 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -5.62 Total: -117.55 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.09 Total: -30.78 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -67.50 2.37 -65.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271007130.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.405 kcal (2) G-P(sol) polarization free energy of solvation -67.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds