Wall clock time and date at job start Tue Mar 31 2020 22:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47227 * 2 1 4 4 C 1.53002 * 109.47308 * 119.99924 * 2 1 3 5 5 H 1.09001 * 115.55442 * 212.19985 * 4 2 1 6 6 C 1.52998 * 117.49737 * 357.90344 * 4 2 1 7 7 C 1.52994 * 59.99933 * 107.49026 * 6 4 2 8 8 H 1.08999 * 117.51672 * 107.48300 * 7 6 4 9 9 C 1.50705 * 117.50111 * 252.51135 * 7 6 4 10 10 O 1.21280 * 119.99817 * 94.95556 * 9 7 6 11 11 N 1.34777 * 119.99814 * 274.96117 * 9 7 6 12 12 C 1.46498 * 120.00263 * 359.97438 * 11 9 7 13 13 C 1.46500 * 119.99644 * 180.02562 * 11 9 7 14 14 C 1.52995 * 109.47446 * 89.99779 * 13 11 9 15 15 C 1.52999 * 109.47494 * 179.97438 * 14 13 11 16 16 N 1.46903 * 109.47531 * 179.97438 * 15 14 13 17 17 C 1.46899 * 110.99960 * 293.95576 * 16 15 14 18 18 C 1.46896 * 111.00099 * 169.99719 * 16 15 14 19 19 C 1.50695 * 109.47218 * 190.00308 * 18 16 15 20 20 O 1.21296 * 120.00137 * 0.02562 * 19 18 16 21 21 N 1.34776 * 120.00286 * 180.02562 * 19 18 16 22 22 C 1.37098 * 120.00421 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99900 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00364 * 179.97438 * 22 21 19 25 25 N 1.31408 * 119.99586 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00033 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47008 * 90.00117 * 26 24 22 28 28 H 1.48494 * 109.47274 * 210.00052 * 26 24 22 29 29 H 1.48501 * 109.47359 * 330.00062 * 26 24 22 30 30 H 1.09002 * 109.47245 * 302.57117 * 1 2 3 31 31 H 1.09005 * 109.47102 * 62.57034 * 1 2 3 32 32 H 1.08999 * 109.47490 * 182.56836 * 1 2 3 33 33 H 1.08998 * 109.47682 * 240.00046 * 2 1 3 34 34 H 1.09009 * 109.47300 * 181.92842 * 3 2 1 35 35 H 1.08997 * 109.47388 * 301.92617 * 3 2 1 36 36 H 1.08995 * 109.47497 * 61.92703 * 3 2 1 37 37 H 1.09001 * 117.49901 * 0.02562 * 6 4 2 38 38 H 1.08997 * 117.50183 * 214.98330 * 6 4 2 39 39 H 1.08997 * 109.47627 * 270.00344 * 12 11 9 40 40 H 1.08996 * 109.46981 * 30.00628 * 12 11 9 41 41 H 1.09005 * 109.46967 * 150.00355 * 12 11 9 42 42 H 1.08994 * 109.47423 * 329.99377 * 13 11 9 43 43 H 1.09007 * 109.47105 * 209.99567 * 13 11 9 44 44 H 1.09005 * 109.47586 * 59.99599 * 14 13 11 45 45 H 1.08997 * 109.47243 * 299.99612 * 14 13 11 46 46 H 1.09001 * 109.47047 * 59.99812 * 15 14 13 47 47 H 1.09007 * 109.47135 * 299.99836 * 15 14 13 48 48 H 1.08999 * 109.47419 * 59.99629 * 17 16 15 49 49 H 1.08997 * 109.46673 * 179.97438 * 17 16 15 50 50 H 1.09000 * 109.46790 * 299.99517 * 17 16 15 51 51 H 1.09005 * 109.47348 * 310.00070 * 18 16 15 52 52 H 1.09003 * 109.47281 * 70.00346 * 18 16 15 53 53 H 0.97001 * 119.99600 * 359.97438 * 21 19 18 54 54 H 0.97006 * 119.99679 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 2.9812 -0.3504 1.6549 6 6 0.9968 -1.2373 2.2424 7 6 1.7658 -2.2223 1.3598 8 1 2.5267 -2.8391 1.8381 9 6 1.0141 -2.8774 0.2297 10 8 1.0603 -2.4023 -0.8852 11 7 0.2904 -3.9912 0.4581 12 6 0.2349 -4.5655 1.8047 13 6 -0.4399 -4.6283 -0.6405 14 6 0.4608 -5.6615 -1.3202 15 6 -0.3020 -6.3273 -2.4672 16 7 0.5630 -7.3189 -3.1203 17 6 1.6990 -6.6686 -3.7871 18 6 -0.2014 -8.1428 -4.0662 19 6 0.6503 -9.2963 -4.5299 20 8 1.7826 -9.4202 -4.1130 21 7 0.1538 -10.1903 -5.4078 22 6 0.9288 -11.2395 -5.8300 23 1 1.9373 -11.3493 -5.4595 24 6 0.4168 -12.1615 -6.7347 25 7 -0.8104 -12.0281 -7.1852 26 14 1.4730 -13.5905 -7.3106 27 1 1.2783 -14.7480 -6.4009 28 1 1.0785 -13.9733 -8.6900 29 1 2.9019 -13.1863 -7.2986 30 1 -0.3634 0.5532 0.8660 31 1 -0.3633 0.4734 -0.9122 32 1 -0.3634 -1.0266 0.0460 33 1 1.8933 -0.5138 -0.8899 34 1 3.1295 1.4427 -0.0346 35 1 1.6487 1.9662 -0.8722 36 1 1.7052 1.9463 0.9067 37 1 -0.0529 -1.0634 2.0056 38 1 1.2516 -1.2058 3.3017 39 1 1.0437 -5.2859 1.9262 40 1 0.3421 -3.7709 2.5432 41 1 -0.7226 -5.0668 1.9468 42 1 -0.7368 -3.8716 -1.3665 43 1 -1.3281 -5.1232 -0.2476 44 1 0.7578 -6.4184 -0.5942 45 1 1.3490 -5.1667 -1.7132 46 1 -0.5993 -5.5707 -3.1934 47 1 -1.1900 -6.8223 -2.0740 48 1 2.2881 -6.1218 -3.0509 49 1 2.3233 -7.4255 -4.2619 50 1 1.3286 -5.9761 -4.5431 51 1 -1.0954 -8.5261 -3.5741 52 1 -0.4907 -7.5367 -4.9247 53 1 -0.7518 -10.0915 -5.7408 54 1 -1.1680 -12.6720 -7.8165 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280871913.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:18 Heat of formation + Delta-G solvation = -64.280660 kcal Electronic energy + Delta-G solvation = -29687.236770 eV Core-core repulsion = 25659.205755 eV Total energy + Delta-G solvation = -4028.031015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.52549 -40.39847 -38.80041 -37.99519 -36.61572 -35.87832 -34.16545 -33.30463 -32.88827 -29.47777 -28.21763 -28.11417 -27.40474 -26.77022 -25.17641 -24.37145 -23.33498 -21.83321 -20.99481 -20.45837 -19.85877 -19.68141 -18.09645 -17.86717 -17.10419 -16.87665 -16.69034 -16.56742 -16.28890 -15.99193 -15.73604 -15.50820 -15.34513 -15.00984 -14.96350 -14.64482 -14.01618 -13.87776 -13.75819 -13.56800 -13.49337 -13.24271 -13.21075 -13.15656 -13.01527 -12.83765 -12.64247 -12.62760 -12.53833 -12.41261 -12.29317 -12.22640 -12.12090 -11.91074 -11.70341 -11.54846 -11.45979 -11.24631 -10.89073 -10.37556 -10.28153 -10.00119 -9.62539 -9.23785 -8.46419 -5.95037 1.37755 1.41216 1.54040 1.59779 2.02929 2.05335 2.28792 2.75716 2.82572 3.20209 3.41310 3.52288 3.73997 3.90580 3.94562 4.06820 4.10958 4.15767 4.25353 4.31068 4.34369 4.38836 4.39280 4.47718 4.50748 4.52213 4.57930 4.58845 4.69463 4.74932 4.76652 4.79166 4.80163 4.89531 4.95061 4.99196 5.01731 5.05298 5.06322 5.14700 5.21419 5.28423 5.34499 5.41135 5.43416 5.58528 5.65494 5.88056 6.05210 6.19936 6.43690 6.61198 7.13248 7.24955 7.56586 8.12876 8.71008 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027598 B = 0.001656 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.317712 B =16906.058144 C =17142.831640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.073 4.073 3 C -0.140 4.140 4 C -0.122 4.122 5 H 0.125 0.875 6 C -0.139 4.139 7 C -0.197 4.197 8 H 0.140 0.860 9 C 0.535 3.465 10 O -0.567 6.567 11 N -0.614 5.614 12 C 0.073 3.927 13 C 0.122 3.878 14 C -0.116 4.116 15 C 0.061 3.939 16 N -0.537 5.537 17 C 0.031 3.969 18 C 0.057 3.943 19 C 0.441 3.559 20 O -0.616 6.616 21 N -0.574 5.574 22 C -0.333 4.333 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.270 1.270 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.057 0.943 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.068 0.932 45 H 0.042 0.958 46 H 0.037 0.963 47 H 0.095 0.905 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.023 0.977 51 H 0.115 0.885 52 H 0.064 0.936 53 H 0.396 0.604 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 23.988 21.858 32.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.091 4.091 3 C -0.198 4.198 4 C -0.141 4.141 5 H 0.143 0.857 6 C -0.176 4.176 7 C -0.218 4.218 8 H 0.158 0.842 9 C 0.324 3.676 10 O -0.447 6.447 11 N -0.346 5.346 12 C -0.069 4.069 13 C -0.001 4.001 14 C -0.155 4.155 15 C -0.067 4.067 16 N -0.261 5.261 17 C -0.117 4.117 18 C -0.074 4.074 19 C 0.228 3.772 20 O -0.502 6.502 21 N -0.212 5.212 22 C -0.463 4.463 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.195 1.195 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.147 0.853 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.123 0.877 44 H 0.086 0.914 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.114 0.886 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.042 0.958 51 H 0.133 0.867 52 H 0.082 0.918 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.949 23.722 21.791 32.270 hybrid contribution -0.103 -0.539 -1.602 1.693 sum -2.052 23.182 20.189 30.810 Atomic orbital electron populations 1.21877 0.95619 1.00721 1.01038 1.20687 0.95578 0.95876 0.96983 1.21802 1.00945 0.95088 1.01920 1.22555 1.01242 0.92073 0.98208 0.85749 1.23328 0.97936 0.98673 0.97654 1.22251 1.04766 0.94360 1.00421 0.84197 1.20230 0.78341 0.79877 0.89117 1.90671 1.63579 1.64271 1.26133 1.47969 1.48970 1.26501 1.11119 1.22034 1.03537 0.99794 0.81504 1.21397 0.94455 0.94936 0.89353 1.21773 0.98646 0.97795 0.97326 1.22128 0.95845 0.92988 0.95768 1.61530 1.09915 1.23426 1.31224 1.22359 0.94263 0.97562 0.97526 1.21757 0.96150 0.93311 0.96165 1.20784 0.88559 0.85779 0.82075 1.90461 1.21706 1.77487 1.60512 1.41931 1.15926 1.23670 1.39642 1.19658 0.98279 1.03840 1.24495 0.90401 1.26036 0.97610 1.01215 0.96426 1.69674 1.15667 1.38291 1.32485 0.84922 0.77918 0.77618 0.77831 1.19544 1.19510 1.19931 0.91680 0.94086 0.94000 0.91799 0.92475 0.93199 0.91644 0.88151 0.85337 0.92398 0.89087 0.89356 0.91483 0.87701 0.91356 0.93968 0.94486 0.88637 0.91282 0.92534 0.95840 0.86721 0.91785 0.77006 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.26 71.98 0.52 -1.84 16 2 C -0.07 -1.28 2.42 -10.80 -0.03 -1.31 16 3 C -0.14 -1.92 9.14 71.98 0.66 -1.26 16 4 C -0.12 -1.63 5.73 -10.80 -0.06 -1.69 16 5 H 0.12 1.28 8.06 -2.39 -0.02 1.27 16 6 C -0.14 -1.25 8.65 30.59 0.26 -0.99 16 7 C -0.20 -2.73 4.53 -11.54 -0.05 -2.78 16 8 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 9 C 0.53 11.00 5.80 87.66 0.51 11.51 16 10 O -0.57 -16.11 12.24 -3.03 -0.04 -16.15 16 11 N -0.61 -10.31 2.87 -846.77 -2.43 -12.75 16 12 C 0.07 0.69 10.31 127.77 1.32 2.00 16 13 C 0.12 2.21 5.45 86.38 0.47 2.68 16 14 C -0.12 -2.71 5.46 30.59 0.17 -2.54 16 15 C 0.06 1.52 4.96 86.30 0.43 1.94 16 16 N -0.54 -18.50 4.50 -927.05 -4.17 -22.68 16 17 C 0.03 1.12 8.96 127.69 1.14 2.27 16 18 C 0.06 2.07 5.45 85.56 0.47 2.54 16 19 C 0.44 21.67 7.47 87.66 0.66 22.32 16 20 O -0.62 -35.04 13.91 -3.08 -0.04 -35.08 16 21 N -0.57 -30.16 5.29 -306.98 -1.62 -31.78 16 22 C -0.33 -19.28 9.68 84.04 0.81 -18.46 16 23 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 24 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 25 N -0.92 -50.20 13.05 21.66 0.28 -49.92 16 26 Si 0.99 43.57 29.55 68.60 2.03 45.60 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 29 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 30 H 0.06 0.87 7.48 -2.39 -0.02 0.86 16 31 H 0.04 0.77 8.14 -2.38 -0.02 0.76 16 32 H 0.04 0.85 4.79 -2.39 -0.01 0.83 16 33 H 0.06 1.59 6.32 -2.39 -0.02 1.57 16 34 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.10 1.03 5.82 -2.39 -0.01 1.01 16 38 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.09 0.54 6.35 -2.39 -0.02 0.52 16 41 H 0.09 0.57 7.89 -2.38 -0.02 0.55 16 42 H 0.07 1.45 7.42 -2.39 -0.02 1.43 16 43 H 0.10 1.32 7.89 -2.38 -0.02 1.30 16 44 H 0.07 1.64 8.14 -2.38 -0.02 1.63 16 45 H 0.04 1.20 6.55 -2.39 -0.02 1.18 16 46 H 0.04 0.90 8.12 -2.39 -0.02 0.88 16 47 H 0.10 1.97 7.93 -2.38 -0.02 1.96 16 48 H 0.07 2.33 6.47 -2.39 -0.02 2.31 16 49 H 0.06 2.48 5.82 -2.39 -0.01 2.47 16 50 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.11 3.54 7.93 -2.38 -0.02 3.52 16 52 H 0.06 2.12 8.12 -2.39 -0.02 2.10 16 53 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 54 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16 Total: -1.00 -74.53 419.15 1.90 -72.63 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: 0.15 Total: 35.97 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 7.74 Total: 14.15 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -7.94 Total: -117.12 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -0.08 Total: -51.23 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -74.53 1.90 -72.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280871913.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.349 kcal (2) G-P(sol) polarization free energy of solvation -74.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds