Wall clock time and date at job start Tue Mar 31 2020 23:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21286 * 119.99962 * 2 1 4 4 N 1.34773 * 120.00111 * 179.97438 * 2 1 3 5 5 C 1.46496 * 119.99952 * 180.02562 * 4 2 1 6 6 H 1.09003 * 109.47694 * 35.00096 * 5 4 2 7 7 C 1.50696 * 109.47433 * 155.00263 * 5 4 2 8 8 O 1.21284 * 119.99934 * 9.65792 * 7 5 4 9 9 N 1.34779 * 120.00477 * 189.38650 * 7 5 4 10 10 C 1.46501 * 119.99519 * 355.77504 * 9 7 5 11 11 C 1.46498 * 120.00264 * 175.78302 * 9 7 5 12 12 C 1.53000 * 109.47068 * 178.19986 * 11 9 7 13 13 C 1.53001 * 109.46907 * 299.99296 * 12 11 9 14 14 C 1.52993 * 109.47585 * 300.00279 * 13 12 11 15 15 N 1.46505 * 109.47403 * 179.97438 * 14 13 12 16 16 C 1.36930 * 120.00077 * 84.99971 * 15 14 13 17 17 H 1.08004 * 119.99667 * 0.02562 * 16 15 14 18 18 C 1.38812 * 120.00324 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99606 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00353 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47067 * 59.99806 * 20 18 16 22 22 H 1.48502 * 109.47579 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47288 * 300.00322 * 20 18 16 24 24 C 1.53000 * 109.47226 * 59.99916 * 14 13 12 25 25 C 1.53001 * 109.47208 * 300.00264 * 24 14 13 26 26 C 1.53008 * 109.47148 * 275.00213 * 5 4 2 27 27 C 1.52997 * 109.46971 * 301.49678 * 26 5 4 28 28 C 1.52995 * 109.46923 * 61.49944 * 26 5 4 29 29 H 1.09003 * 109.47163 * 239.99711 * 1 2 3 30 30 H 1.08991 * 109.47256 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47073 * 120.00243 * 1 2 3 32 32 H 0.97001 * 120.00255 * 0.02562 * 4 2 1 33 33 H 1.08998 * 109.46987 * 34.50801 * 10 9 7 34 34 H 1.09008 * 109.46643 * 154.49716 * 10 9 7 35 35 H 1.08998 * 109.47520 * 274.49601 * 10 9 7 36 36 H 1.09002 * 109.47243 * 298.19891 * 11 9 7 37 37 H 1.08996 * 109.47438 * 59.99434 * 12 11 9 38 38 H 1.09002 * 109.46677 * 179.97438 * 12 11 9 39 39 H 1.09003 * 109.47267 * 179.97438 * 13 12 11 40 40 H 1.09002 * 109.46967 * 60.00771 * 13 12 11 41 41 H 1.09002 * 109.47370 * 300.00245 * 14 13 12 42 42 H 0.97001 * 120.00017 * 265.00241 * 15 14 13 43 43 H 0.96994 * 119.99700 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.47438 * 180.02562 * 24 14 13 45 45 H 1.09004 * 109.47537 * 59.99621 * 24 14 13 46 46 H 1.09001 * 109.47063 * 299.99991 * 25 24 14 47 47 H 1.08996 * 109.47744 * 179.97438 * 25 24 14 48 48 H 1.09001 * 109.46885 * 181.49997 * 26 5 4 49 49 H 1.09004 * 109.46901 * 59.99926 * 27 26 5 50 50 H 1.08994 * 109.47342 * 179.97438 * 27 26 5 51 51 H 1.08998 * 109.47591 * 300.00066 * 27 26 5 52 52 H 1.09004 * 109.46868 * 180.02562 * 28 26 5 53 53 H 1.09001 * 109.47383 * 299.99748 * 28 26 5 54 54 H 1.08998 * 109.47405 * 60.00618 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 1 4.0091 -0.3252 0.5905 7 6 4.1481 -2.4546 0.6019 8 8 3.3739 -3.3601 0.8296 9 7 5.4583 -2.6021 0.8813 10 6 6.4081 -1.5481 0.5162 11 6 5.9327 -3.8162 1.5498 12 6 7.4532 -3.7507 1.7074 13 6 8.1046 -3.6408 0.3274 14 6 7.7311 -4.8642 -0.5119 15 7 8.3544 -4.7586 -1.8336 16 6 9.6415 -5.1874 -2.0198 17 1 10.1969 -5.6038 -1.1924 18 6 10.2323 -5.0868 -3.2719 19 7 9.5555 -4.5789 -4.2800 20 14 11.9883 -5.6711 -3.5257 21 1 12.0807 -7.1171 -3.2005 22 1 12.3820 -5.4554 -4.9413 23 1 12.8984 -4.9047 -2.6370 24 6 6.2107 -4.9297 -0.6695 25 6 5.5591 -5.0397 0.7104 26 6 4.1565 -1.0416 -1.4358 27 6 3.6163 -2.2033 -2.2722 28 6 3.6777 0.2830 -2.0333 29 1 -0.3634 -0.5139 0.8900 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.6960 -2.0072 0.0005 33 1 5.9281 -0.5749 0.6190 34 1 7.2755 -1.5967 1.1747 35 1 6.7276 -1.6885 -0.5164 36 1 5.4686 -3.8947 2.5329 37 1 7.7193 -2.8791 2.3053 38 1 7.8060 -4.6540 2.2052 39 1 9.1878 -3.5937 0.4396 40 1 7.7517 -2.7374 -0.1700 41 1 8.0840 -5.7676 -0.0145 42 1 7.8554 -4.3849 -2.5767 43 1 9.9684 -4.5083 -5.1548 44 1 5.9445 -5.8015 -1.2671 45 1 5.8576 -4.0263 -1.1669 46 1 5.9121 -5.9431 1.2079 47 1 4.4759 -5.0859 0.5983 48 1 5.2461 -1.0684 -1.4378 49 1 2.5266 -2.1766 -2.2702 50 1 3.9796 -2.1137 -3.2959 51 1 3.9573 -3.1470 -1.8466 52 1 4.0411 0.3721 -3.0571 53 1 2.5880 0.3097 -2.0313 54 1 4.0626 1.1106 -1.4374 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282275277.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:33 Heat of formation + Delta-G solvation = -73.289150 kcal Electronic energy + Delta-G solvation = -32671.861592 eV Core-core repulsion = 28643.439940 eV Total energy + Delta-G solvation = -4028.421653 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.19099 -40.73246 -39.18044 -37.11526 -36.62160 -34.85855 -34.13192 -32.75873 -31.95698 -30.83124 -29.81076 -28.22223 -27.89101 -27.19347 -25.47482 -23.50003 -22.80979 -22.14267 -21.42530 -20.70713 -19.96687 -19.03587 -18.39240 -17.70478 -17.29245 -17.10693 -16.84397 -16.62697 -16.12338 -15.85453 -15.42337 -15.27583 -15.04166 -14.98047 -14.70236 -14.59409 -14.30052 -13.93428 -13.80284 -13.44428 -13.34888 -13.29932 -13.18826 -13.13391 -12.98117 -12.82927 -12.77881 -12.75144 -12.67320 -12.38051 -12.18811 -12.10426 -12.01800 -11.82235 -11.70900 -11.54323 -11.25735 -11.09287 -10.89571 -10.80530 -10.48191 -10.05299 -9.58018 -8.94769 -7.91056 -5.18279 1.47302 1.48920 1.49397 1.55417 1.65654 1.80507 2.41487 2.57801 3.29997 3.42020 3.72825 3.77490 3.82944 3.87484 3.94388 3.96591 4.12436 4.21999 4.31038 4.34517 4.40014 4.47052 4.55209 4.55902 4.57783 4.62775 4.67590 4.68781 4.72831 4.75035 4.83179 4.87658 4.89355 4.96529 5.06709 5.07799 5.13202 5.16821 5.21309 5.24067 5.29868 5.34665 5.38555 5.40218 5.51067 5.59470 5.61082 5.78180 6.31287 6.35270 6.55889 7.06157 7.26316 7.37045 8.15303 8.37973 9.32229 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.003139 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.841315 B = 8919.257371 C = 9752.386342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.508 3.492 3 O -0.580 6.580 4 N -0.706 5.706 5 C 0.138 3.862 6 H 0.109 0.891 7 C 0.516 3.484 8 O -0.558 6.558 9 N -0.593 5.593 10 C 0.058 3.942 11 C 0.157 3.843 12 C -0.114 4.114 13 C -0.151 4.151 14 C 0.176 3.824 15 N -0.737 5.737 16 C -0.232 4.232 17 H 0.072 0.928 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.967 3.033 21 H -0.281 1.281 22 H -0.298 1.298 23 H -0.278 1.278 24 C -0.104 4.104 25 C -0.125 4.125 26 C -0.103 4.103 27 C -0.142 4.142 28 C -0.127 4.127 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.414 0.586 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.083 0.917 41 H 0.032 0.968 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.038 0.962 45 H 0.050 0.950 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.087 0.913 49 H 0.064 0.936 50 H 0.056 0.944 51 H 0.040 0.960 52 H 0.054 0.946 53 H 0.051 0.949 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.595 8.423 13.179 22.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.298 3.702 3 O -0.460 6.460 4 N -0.360 5.360 5 C 0.029 3.971 6 H 0.127 0.873 7 C 0.303 3.697 8 O -0.437 6.437 9 N -0.325 5.325 10 C -0.084 4.084 11 C 0.054 3.946 12 C -0.152 4.152 13 C -0.191 4.191 14 C 0.068 3.932 15 N -0.376 5.376 16 C -0.364 4.364 17 H 0.090 0.910 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.797 3.203 21 H -0.208 1.208 22 H -0.224 1.224 23 H -0.204 1.204 24 C -0.143 4.143 25 C -0.164 4.164 26 C -0.123 4.123 27 C -0.199 4.199 28 C -0.184 4.184 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.252 0.748 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.050 0.950 42 H 0.201 0.799 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.083 0.917 50 H 0.075 0.925 51 H 0.059 0.941 52 H 0.073 0.927 53 H 0.070 0.930 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.383 8.588 13.357 22.816 hybrid contribution 0.931 -0.781 -1.026 1.591 sum -15.452 7.807 12.331 21.254 Atomic orbital electron populations 1.21930 0.88357 1.06170 1.06158 1.21439 0.92073 0.82530 0.74193 1.90718 1.71648 1.32485 1.51120 1.45814 1.05291 1.10044 1.74898 1.20766 0.82896 0.95973 0.97472 0.87329 1.20588 0.82299 0.89014 0.77763 1.90610 1.55938 1.42451 1.54708 1.47802 1.06461 1.19646 1.58613 1.22475 0.94527 0.89974 1.01400 1.21082 0.95033 0.83299 0.95167 1.21801 0.92330 1.03888 0.97214 1.22668 0.99670 1.01034 0.95681 1.20412 0.91285 0.95805 0.85703 1.42624 1.12808 1.74739 1.07433 1.19534 0.90747 1.31672 0.94493 0.90961 1.25474 1.02063 1.03311 0.95991 1.69805 1.38176 1.53126 1.00939 0.85304 0.80688 0.78147 0.76191 1.20775 1.22446 1.20375 1.21553 0.95108 1.00268 0.97331 1.21879 1.01578 0.98012 0.94936 1.21560 1.01377 0.96748 0.92575 1.21773 1.01524 0.96849 0.99802 1.21746 1.01113 0.95410 1.00142 0.87524 0.88770 0.87528 0.74785 0.89838 0.88170 0.92153 0.89796 0.89278 0.89747 0.93836 0.89933 0.95031 0.79888 0.94241 0.94359 0.93155 0.90599 0.90522 0.89484 0.91708 0.92519 0.94096 0.92729 0.93025 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.32 71.24 0.74 -0.97 16 2 C 0.51 9.58 6.35 87.66 0.56 10.13 16 3 O -0.58 -15.09 14.21 -3.05 -0.04 -15.14 16 4 N -0.71 -13.23 4.08 -446.09 -1.82 -15.05 16 5 C 0.14 2.93 1.59 44.25 0.07 3.00 16 6 H 0.11 2.35 6.47 -2.39 -0.02 2.33 16 7 C 0.52 12.32 5.61 87.66 0.49 12.81 16 8 O -0.56 -15.51 13.65 -3.04 -0.04 -15.55 16 9 N -0.59 -13.23 2.25 -822.58 -1.85 -15.08 16 10 C 0.06 1.14 6.90 127.77 0.88 2.02 16 11 C 0.16 3.57 3.00 44.99 0.14 3.71 16 12 C -0.11 -2.51 4.91 30.59 0.15 -2.36 16 13 C -0.15 -4.65 4.88 30.59 0.15 -4.50 16 14 C 0.18 6.67 2.77 44.99 0.12 6.79 16 15 N -0.74 -36.43 5.12 -322.94 -1.65 -38.08 16 16 C -0.23 -12.71 9.93 84.03 0.83 -11.87 16 17 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 18 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 19 N -0.97 -59.00 13.06 21.65 0.28 -58.71 16 20 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 C -0.10 -3.50 5.23 30.59 0.16 -3.34 16 25 C -0.13 -3.40 5.21 30.60 0.16 -3.24 16 26 C -0.10 -2.28 2.57 -10.79 -0.03 -2.31 16 27 C -0.14 -3.39 8.79 71.98 0.63 -2.75 16 28 C -0.13 -2.82 7.73 71.98 0.56 -2.27 16 29 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 0.97 8.12 -2.39 -0.02 0.95 16 31 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.41 7.13 7.72 -92.71 -0.72 6.41 16 33 H 0.08 1.34 6.24 -2.39 -0.01 1.32 16 34 H 0.10 1.74 5.12 -2.38 -0.01 1.72 16 35 H 0.06 1.42 5.36 -2.39 -0.01 1.41 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.55 6.83 -2.39 -0.02 1.53 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 2.49 3.68 -2.39 -0.01 2.49 16 41 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 42 H 0.37 19.89 7.80 -92.71 -0.72 19.17 16 43 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.05 1.74 6.86 -2.38 -0.02 1.73 16 46 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 47 H 0.08 2.25 5.89 -2.39 -0.01 2.24 16 48 H 0.09 2.00 5.32 -2.39 -0.01 1.99 16 49 H 0.06 1.37 7.56 -2.38 -0.02 1.35 16 50 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.04 1.12 6.51 -2.39 -0.02 1.11 16 52 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 53 H 0.05 1.17 5.73 -2.39 -0.01 1.15 16 54 H 0.06 1.33 7.63 -2.39 -0.02 1.31 16 Total: -1.00 -69.51 394.91 2.46 -67.05 By element: Atomic # 1 Polarization: 42.12 SS G_CDS: -0.51 Total: 41.61 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 6.08 Total: 0.98 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -5.04 Total: -126.93 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.08 Total: -30.69 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -69.51 2.46 -67.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282275277.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.237 kcal (2) G-P(sol) polarization free energy of solvation -69.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds