Wall clock time and date at job start Tue Mar 31 2020 22:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47089 * 2 1 4 4 C 1.53003 * 109.47200 * 120.00468 * 2 1 3 5 5 H 1.08998 * 109.46698 * 299.99777 * 4 2 1 6 6 C 1.52999 * 109.46939 * 179.97438 * 4 2 1 7 7 C 1.52992 * 109.47065 * 174.99926 * 6 4 2 8 8 N 1.46505 * 109.47262 * 179.97438 * 7 6 4 9 9 C 1.46497 * 120.00024 * 269.99786 * 8 7 6 10 10 C 1.34775 * 119.99781 * 89.99993 * 8 7 6 11 11 O 1.21284 * 120.00330 * 353.95194 * 10 8 7 12 12 C 1.50701 * 119.99737 * 173.95920 * 10 8 7 13 13 C 1.53001 * 109.60345 * 57.38986 * 12 10 8 14 14 C 1.53349 * 109.60212 * 177.87988 * 12 10 8 15 15 C 1.53080 * 108.41573 * 52.20904 * 14 12 10 16 16 C 1.50172 * 109.88772 * 48.91480 * 15 14 12 17 17 O 1.21281 * 118.24584 * 162.39696 * 16 15 14 18 18 N 1.33359 * 123.50876 * 342.41884 * 16 15 14 19 19 C 1.45754 * 124.10721 * 2.19717 * 18 16 15 20 20 N 1.46503 * 109.47054 * 59.99654 * 4 2 1 21 21 C 1.36936 * 119.99947 * 274.99909 * 20 4 2 22 22 H 1.08002 * 120.00143 * 359.97438 * 21 20 4 23 23 C 1.38809 * 119.99704 * 179.73076 * 21 20 4 24 24 N 1.31617 * 120.00007 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99842 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47182 * 59.99664 * 25 23 21 27 27 H 1.48501 * 109.47097 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47074 * 299.99548 * 25 23 21 29 29 H 1.09004 * 109.46716 * 299.99808 * 1 2 3 30 30 H 1.08993 * 109.47272 * 59.99598 * 1 2 3 31 31 H 1.09006 * 109.47226 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46716 * 240.00192 * 2 1 3 33 33 H 1.09002 * 109.46720 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47100 * 300.00323 * 3 2 1 35 35 H 1.09004 * 109.47185 * 60.00479 * 3 2 1 36 36 H 1.09004 * 109.46863 * 294.99693 * 6 4 2 37 37 H 1.08999 * 109.47413 * 54.99689 * 6 4 2 38 38 H 1.09004 * 109.47090 * 299.99628 * 7 6 4 39 39 H 1.08998 * 109.47716 * 59.99637 * 7 6 4 40 40 H 1.09005 * 109.46910 * 84.73914 * 9 8 7 41 41 H 1.09001 * 109.46986 * 204.73568 * 9 8 7 42 42 H 1.09003 * 109.47204 * 324.73909 * 9 8 7 43 43 H 1.08999 * 109.47063 * 59.99761 * 13 12 10 44 44 H 1.08999 * 109.47058 * 179.97438 * 13 12 10 45 45 H 1.09002 * 109.46870 * 299.99745 * 13 12 10 46 46 H 1.09003 * 109.67287 * 171.95941 * 14 12 10 47 47 H 1.09005 * 109.67109 * 292.48754 * 14 12 10 48 48 H 1.09002 * 109.40215 * 288.78733 * 15 14 12 49 49 H 1.09002 * 109.40364 * 169.04391 * 15 14 12 50 50 H 0.96999 * 117.94653 * 182.22110 * 18 16 15 51 51 H 1.08992 * 109.30309 * 220.63270 * 19 18 16 52 52 H 1.09004 * 109.12896 * 101.15427 * 19 18 16 53 53 H 0.96996 * 119.99416 * 94.99974 * 20 4 2 54 54 H 0.97010 * 119.99582 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5701 -0.7219 1.2488 7 6 4.0801 -1.3316 2.5560 8 7 5.5452 -1.3326 2.5554 9 6 6.2766 -2.4831 2.0193 10 6 6.2200 -0.2752 3.0482 11 8 5.6195 0.7214 3.3906 12 6 7.7207 -0.3310 3.1736 13 6 8.3400 -0.6184 1.8044 14 6 8.2426 1.0086 3.7072 15 6 7.4699 1.3553 4.9824 16 6 7.4512 0.1714 5.9061 17 8 7.1755 0.3578 7.0724 18 7 7.7219 -1.0737 5.5128 19 6 8.1127 -1.4355 4.1560 20 7 1.5517 -2.1026 1.2491 21 6 0.3101 -2.3898 1.7503 22 1 -0.3089 -1.5982 2.1461 23 6 -0.1548 -3.6977 1.7451 24 7 0.5974 -4.6616 1.2580 25 14 -1.8488 -4.0895 2.4282 26 1 -2.8768 -3.3401 1.6622 27 1 -2.1064 -5.5469 2.3070 28 1 -1.9098 -3.6928 3.8579 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8901 36 1 3.9330 -1.3116 0.4069 37 1 3.9338 0.3017 1.1590 38 1 3.7173 -0.7419 3.3979 39 1 3.7165 -2.3551 2.6459 40 1 6.3763 -2.3789 0.9388 41 1 7.2668 -2.5277 2.4729 42 1 5.7310 -3.3989 2.2471 43 1 8.0639 0.1730 1.1075 44 1 9.4252 -0.6578 1.8975 45 1 7.9718 -1.5746 1.4326 46 1 9.3056 0.9245 3.9332 47 1 8.0862 1.7870 2.9603 48 1 6.4471 1.6284 4.7230 49 1 7.9525 2.1960 5.4809 50 1 7.6541 -1.7832 6.1707 51 1 7.6150 -2.3629 3.8728 52 1 9.1924 -1.5812 4.1221 53 1 2.1078 -2.8135 0.8940 54 1 0.2722 -5.5756 1.2540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282563389.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:08 Heat of formation + Delta-G solvation = -73.612792 kcal Electronic energy + Delta-G solvation = -32062.649474 eV Core-core repulsion = 28034.213788 eV Total energy + Delta-G solvation = -4028.435687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.41556 -40.39091 -38.99403 -37.57800 -36.90112 -34.93288 -34.45740 -33.22793 -32.17711 -31.09643 -28.28063 -27.68749 -27.29746 -26.95858 -25.21432 -25.04102 -23.59430 -22.49837 -21.26548 -20.76435 -19.60803 -19.12437 -18.39309 -17.80287 -16.97318 -16.85149 -16.79311 -16.57594 -16.23614 -15.72996 -15.40772 -15.32062 -15.23081 -14.95469 -14.76529 -14.64353 -14.59200 -14.06214 -13.78546 -13.60867 -13.49491 -13.35320 -13.23664 -13.02417 -12.93495 -12.84487 -12.78219 -12.66526 -12.50390 -12.23204 -12.21664 -12.09055 -12.03320 -11.72269 -11.69795 -11.47336 -11.39681 -11.19875 -10.85042 -10.81479 -10.43214 -10.05980 -9.60693 -8.89137 -7.87974 -5.11993 1.47995 1.48287 1.50625 1.53748 1.67198 2.00442 2.29859 2.59350 3.28244 3.44687 3.46351 3.62722 3.75071 3.90264 3.94831 3.98376 4.12376 4.20848 4.22802 4.40148 4.43258 4.47280 4.51327 4.56673 4.63376 4.65074 4.69514 4.73555 4.78097 4.78543 4.86763 4.91230 4.94088 5.00782 5.02643 5.09201 5.12255 5.17236 5.19029 5.24239 5.35196 5.38540 5.41123 5.57995 5.59012 5.66907 5.75256 5.77405 6.24927 6.34758 6.46806 7.15020 7.19693 7.42454 8.16617 8.42950 9.34953 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.003121 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.067451 B = 8969.751016 C = 9650.334195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C -0.136 4.136 4 C 0.182 3.818 5 H 0.027 0.973 6 C -0.116 4.116 7 C 0.132 3.868 8 N -0.607 5.607 9 C 0.049 3.951 10 C 0.510 3.490 11 O -0.571 6.571 12 C -0.091 4.091 13 C -0.155 4.155 14 C -0.089 4.089 15 C -0.157 4.157 16 C 0.516 3.484 17 O -0.616 6.616 18 N -0.716 5.716 19 C 0.105 3.895 20 N -0.725 5.725 21 C -0.216 4.216 22 H 0.068 0.932 23 C -0.069 4.069 24 N -0.964 5.964 25 Si 0.952 3.048 26 H -0.282 1.282 27 H -0.297 1.297 28 H -0.286 1.286 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.119 0.881 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.103 0.897 45 H 0.093 0.907 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.115 0.885 49 H 0.100 0.900 50 H 0.403 0.597 51 H 0.104 0.896 52 H 0.122 0.878 53 H 0.374 0.626 54 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.905 7.073 -2.582 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.194 4.194 4 C 0.073 3.927 5 H 0.046 0.954 6 C -0.155 4.155 7 C 0.009 3.991 8 N -0.338 5.338 9 C -0.092 4.092 10 C 0.300 3.700 11 O -0.450 6.450 12 C -0.095 4.095 13 C -0.212 4.212 14 C -0.127 4.127 15 C -0.196 4.196 16 C 0.305 3.695 17 O -0.500 6.500 18 N -0.366 5.366 19 C -0.018 4.018 20 N -0.365 5.365 21 C -0.348 4.348 22 H 0.085 0.915 23 C -0.261 4.261 24 N -0.616 5.616 25 Si 0.783 3.217 26 H -0.209 1.209 27 H -0.223 1.223 28 H -0.213 1.213 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.137 0.863 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.122 0.878 45 H 0.112 0.888 46 H 0.124 0.876 47 H 0.104 0.896 48 H 0.132 0.868 49 H 0.118 0.882 50 H 0.239 0.761 51 H 0.122 0.878 52 H 0.140 0.860 53 H 0.207 0.793 54 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 22.305 7.845 -1.916 23.722 hybrid contribution -1.667 -1.007 0.689 2.066 sum 20.638 6.838 -1.226 21.776 Atomic orbital electron populations 1.21753 0.96182 1.01614 0.99796 1.21633 0.95801 0.96096 0.99100 1.21815 1.00909 0.95257 1.01417 1.20361 0.91945 0.85331 0.95040 0.95445 1.21980 0.95083 1.01120 0.97296 1.21207 0.79113 1.01228 0.97595 1.47947 1.06271 1.18864 1.60679 1.22748 0.98526 0.87497 1.00454 1.21184 0.90809 0.82056 0.75976 1.90541 1.71342 1.32475 1.50680 1.21200 0.90014 0.98467 0.99824 1.22310 1.03177 1.04420 0.91330 1.21557 1.00267 0.95256 0.95585 1.22086 1.06227 0.95396 0.95929 1.20721 0.74421 0.85955 0.88376 1.90706 1.51861 1.86024 1.21373 1.45477 1.69097 1.08350 1.13687 1.22132 1.03535 0.97182 0.78924 1.42507 1.16960 1.03558 1.73434 1.19387 0.93500 0.92077 1.29844 0.91453 1.25246 1.01124 0.96096 1.03657 1.69755 1.38237 0.99702 1.53890 0.85519 0.81631 0.76280 0.78234 1.20896 1.22324 1.21286 0.94425 0.93031 0.93153 0.92622 0.92167 0.92087 0.93557 0.91564 0.90951 0.93482 0.91067 0.90419 0.86295 0.91348 0.91847 0.87781 0.88822 0.87593 0.89634 0.86784 0.88185 0.76107 0.87784 0.86011 0.79306 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 8.26 71.98 0.59 -4.49 16 2 C -0.11 -3.65 2.69 -10.79 -0.03 -3.68 16 3 C -0.14 -3.85 8.85 71.98 0.64 -3.21 16 4 C 0.18 7.02 2.02 44.99 0.09 7.11 16 5 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 6 C -0.12 -3.68 4.86 30.59 0.15 -3.54 16 7 C 0.13 4.25 5.29 86.38 0.46 4.71 16 8 N -0.61 -14.21 2.87 -846.75 -2.43 -16.64 16 9 C 0.05 0.71 8.24 127.77 1.05 1.76 16 10 C 0.51 12.10 5.83 87.66 0.51 12.61 16 11 O -0.57 -18.42 12.73 -3.04 -0.04 -18.46 16 12 C -0.09 -1.22 0.51 -52.84 -0.03 -1.25 16 13 C -0.16 -1.00 8.09 71.98 0.58 -0.42 16 14 C -0.09 -1.26 4.72 30.74 0.15 -1.11 16 15 C -0.16 -3.60 5.42 29.71 0.16 -3.44 16 16 C 0.52 13.94 7.44 87.71 0.65 14.59 16 17 O -0.62 -22.74 17.78 -3.03 -0.05 -22.80 16 18 N -0.72 -13.36 5.35 -467.32 -2.50 -15.86 16 19 C 0.11 1.07 5.46 86.49 0.47 1.54 16 20 N -0.72 -34.03 4.45 -322.93 -1.44 -35.47 16 21 C -0.22 -11.45 7.57 84.03 0.64 -10.82 16 22 H 0.07 3.56 7.40 -2.91 -0.02 3.54 16 23 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 24 N -0.96 -56.39 13.06 21.65 0.28 -56.11 16 25 Si 0.95 45.88 29.55 68.60 2.03 47.90 16 26 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 27 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 2.24 6.01 -2.38 -0.01 2.23 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.06 1.58 6.32 -2.39 -0.02 1.56 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.07 2.24 6.18 -2.39 -0.01 2.22 16 38 H 0.05 1.78 7.52 -2.38 -0.02 1.77 16 39 H 0.07 2.58 7.55 -2.39 -0.02 2.56 16 40 H 0.08 0.95 7.57 -2.38 -0.02 0.93 16 41 H 0.12 0.86 2.91 -2.39 -0.01 0.85 16 42 H 0.07 1.15 7.97 -2.39 -0.02 1.13 16 43 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.09 0.45 4.07 -2.39 -0.01 0.44 16 46 H 0.11 0.87 8.13 -2.39 -0.02 0.85 16 47 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 48 H 0.11 3.41 5.22 -2.48 -0.01 3.39 16 49 H 0.10 2.07 8.14 -2.39 -0.02 2.06 16 50 H 0.40 7.06 8.80 -92.71 -0.82 6.25 16 51 H 0.10 0.84 5.14 -2.39 -0.01 0.83 16 52 H 0.12 0.35 8.12 -2.38 -0.02 0.33 16 53 H 0.37 18.64 7.80 -92.71 -0.72 17.92 16 54 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 Total: -1.00 -76.31 402.39 1.78 -74.53 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -0.62 Total: 35.89 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 6.55 Total: 7.01 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -6.09 Total: -124.08 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -0.09 Total: -41.25 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -76.31 1.78 -74.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282563389.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.919 kcal (2) G-P(sol) polarization free energy of solvation -76.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds