Wall clock time and date at job start Tue Mar 31 2020 22:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46535 * 2 1 4 4 C 1.53002 * 109.46926 * 119.99653 * 2 1 3 5 5 H 1.09001 * 109.47032 * 300.00049 * 4 2 1 6 6 C 1.52992 * 109.46991 * 60.00336 * 4 2 1 7 7 C 1.53001 * 109.47099 * 184.99479 * 6 4 2 8 8 N 1.46501 * 109.47451 * 179.97438 * 7 6 4 9 9 C 1.46496 * 120.00280 * 270.00195 * 8 7 6 10 10 C 1.34778 * 119.99710 * 90.00294 * 8 7 6 11 11 O 1.21284 * 119.99915 * 6.12170 * 10 8 7 12 12 C 1.50696 * 119.99972 * 186.12327 * 10 8 7 13 13 C 1.52994 * 109.60293 * 304.48147 * 12 10 8 14 14 C 1.53350 * 109.60396 * 184.15443 * 12 10 8 15 15 C 1.53069 * 108.42567 * 172.71338 * 14 12 10 16 16 C 1.50172 * 109.89084 * 48.89937 * 15 14 12 17 17 O 1.21280 * 118.24480 * 162.13265 * 16 15 14 18 18 N 1.33357 * 123.51102 * 342.42164 * 16 15 14 19 19 C 1.45755 * 124.10480 * 2.22079 * 18 16 15 20 20 N 1.46505 * 109.46905 * 180.02562 * 4 2 1 21 21 C 1.36940 * 119.99620 * 84.99676 * 20 4 2 22 22 H 1.07997 * 120.00266 * 0.02562 * 21 20 4 23 23 C 1.38818 * 119.99616 * 179.97438 * 21 20 4 24 24 N 1.31616 * 119.99938 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99717 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46921 * 90.00571 * 25 23 21 27 27 H 1.48504 * 109.46710 * 209.99930 * 25 23 21 28 28 H 1.48496 * 109.47468 * 330.00273 * 25 23 21 29 29 H 1.09000 * 109.46918 * 299.99593 * 1 2 3 30 30 H 1.08999 * 109.47279 * 60.00414 * 1 2 3 31 31 H 1.09004 * 109.46537 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46902 * 240.00022 * 2 1 3 33 33 H 1.09006 * 109.46910 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46999 * 299.99758 * 3 2 1 35 35 H 1.09000 * 109.47883 * 60.00298 * 3 2 1 36 36 H 1.09002 * 109.47674 * 65.00008 * 6 4 2 37 37 H 1.08998 * 109.47463 * 304.99421 * 6 4 2 38 38 H 1.09002 * 109.47011 * 60.00250 * 7 6 4 39 39 H 1.08996 * 109.47419 * 300.00398 * 7 6 4 40 40 H 1.08990 * 109.47526 * 267.73643 * 9 8 7 41 41 H 1.08999 * 109.47002 * 27.74514 * 9 8 7 42 42 H 1.09007 * 109.46910 * 147.74031 * 9 8 7 43 43 H 1.09000 * 109.46914 * 299.67424 * 13 12 10 44 44 H 1.08996 * 109.47245 * 59.67747 * 13 12 10 45 45 H 1.09003 * 109.47444 * 179.67481 * 13 12 10 46 46 H 1.08997 * 109.66966 * 52.97744 * 14 12 10 47 47 H 1.09004 * 109.70697 * 292.46679 * 14 12 10 48 48 H 1.09004 * 109.39944 * 288.77290 * 15 14 12 49 49 H 1.09000 * 109.33004 * 168.98757 * 15 14 12 50 50 H 0.96995 * 117.94343 * 182.20215 * 18 16 15 51 51 H 1.09000 * 109.29859 * 220.61694 * 19 18 16 52 52 H 1.08993 * 109.13362 * 101.13285 * 19 18 16 53 53 H 0.96992 * 120.00084 * 265.00699 * 20 4 2 54 54 H 0.96999 * 119.99898 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2073 2.1393 6 6 1.5301 -2.1636 1.2493 7 6 1.9349 -2.8477 2.5567 8 7 1.4461 -4.2287 2.5570 9 6 0.1179 -4.5356 3.0935 10 6 2.2184 -5.2170 2.0637 11 8 3.3584 -4.9827 1.7224 12 6 1.6656 -6.6131 1.9363 13 6 1.1445 -7.0848 3.2953 14 6 2.7688 -7.5611 1.4509 15 6 2.2339 -8.9942 1.5056 16 6 0.8861 -9.0620 0.8467 17 8 0.4671 -10.1483 0.5075 18 7 0.1278 -7.9909 0.6096 19 6 0.5274 -6.6229 0.9151 20 7 3.5051 -0.7207 1.2496 21 6 4.1892 0.3544 1.7510 22 1 3.6488 1.2017 2.1466 23 6 5.5774 0.3547 1.7518 24 7 6.2359 -0.6781 1.2702 25 14 6.5106 1.8209 2.4364 26 1 6.7575 1.6173 3.8865 27 1 7.8086 1.9563 1.7276 28 1 5.7080 3.0546 2.2393 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.9647 -2.7028 0.4076 37 1 0.4438 -2.1650 1.1598 38 1 1.5002 -2.3087 3.3985 39 1 3.0212 -2.8463 2.6463 40 1 0.2033 -4.7956 4.1485 41 1 -0.5279 -3.6642 2.9851 42 1 -0.3100 -5.3754 2.5459 43 1 1.9619 -7.0886 4.0164 44 1 0.3606 -6.4097 3.6381 45 1 0.7399 -8.0924 3.1995 46 1 3.6415 -7.4702 2.0977 47 1 3.0439 -7.3109 0.4263 48 1 2.1446 -9.3080 2.5457 49 1 2.9250 -9.6574 0.9853 50 1 -0.7441 -8.1311 0.2085 51 1 -0.3262 -6.0806 1.3218 52 1 0.8608 -6.1351 -0.0008 53 1 3.9904 -1.4817 0.8946 54 1 7.2059 -0.6777 1.2704 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282563391.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:16 Heat of formation + Delta-G solvation = -78.830694 kcal Electronic energy + Delta-G solvation = -31722.477113 eV Core-core repulsion = 27693.815161 eV Total energy + Delta-G solvation = -4028.661952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.30072 -40.61339 -38.93752 -37.74549 -36.76634 -34.88562 -34.46230 -33.19569 -32.02550 -30.88391 -28.46136 -27.82330 -27.47529 -26.86599 -25.58543 -24.96370 -23.47991 -22.47154 -20.89467 -20.63195 -19.33348 -19.05642 -18.35289 -17.83121 -17.18601 -17.02983 -16.82244 -16.39017 -16.12102 -15.76137 -15.60273 -15.39833 -15.22953 -15.09296 -14.92035 -14.66572 -14.38863 -14.16306 -13.85846 -13.53089 -13.50232 -13.31829 -12.99719 -12.98651 -12.86348 -12.84874 -12.84216 -12.66506 -12.43408 -12.32909 -12.18013 -11.99956 -11.99534 -11.69610 -11.63086 -11.57559 -11.35688 -11.14057 -10.84886 -10.80440 -10.63193 -10.13326 -9.57116 -8.86407 -7.83667 -5.09778 1.46962 1.47775 1.54102 1.55758 1.58549 1.99614 2.29385 2.61084 3.27958 3.39460 3.48331 3.58888 3.62076 3.92631 3.97962 4.03462 4.06252 4.10833 4.24799 4.29059 4.34123 4.46474 4.51160 4.56050 4.60621 4.66997 4.70340 4.74880 4.78987 4.80944 4.86056 4.87216 4.90115 4.98773 5.06276 5.07900 5.09880 5.20022 5.24749 5.27448 5.34550 5.41557 5.47760 5.60478 5.64042 5.72832 5.79161 5.82006 6.21452 6.36847 6.46502 7.15176 7.22498 7.42587 8.22017 8.43198 9.39818 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014511 B = 0.002908 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.158387 B = 9626.614793 C =10679.623359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 C -0.137 4.137 4 C 0.180 3.820 5 H 0.050 0.950 6 C -0.119 4.119 7 C 0.124 3.876 8 N -0.607 5.607 9 C 0.049 3.951 10 C 0.516 3.484 11 O -0.577 6.577 12 C -0.085 4.085 13 C -0.164 4.164 14 C -0.100 4.100 15 C -0.128 4.128 16 C 0.522 3.478 17 O -0.602 6.602 18 N -0.701 5.701 19 C 0.119 3.881 20 N -0.732 5.732 21 C -0.208 4.208 22 H 0.079 0.921 23 C -0.083 4.083 24 N -0.972 5.972 25 Si 0.958 3.042 26 H -0.292 1.292 27 H -0.304 1.304 28 H -0.267 1.267 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.035 0.965 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.044 0.956 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.123 0.877 49 H 0.106 0.894 50 H 0.411 0.589 51 H 0.127 0.873 52 H 0.066 0.934 53 H 0.367 0.633 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.182 -11.388 3.922 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 C -0.195 4.195 4 C 0.071 3.929 5 H 0.068 0.932 6 C -0.158 4.158 7 C 0.001 3.999 8 N -0.339 5.339 9 C -0.091 4.091 10 C 0.303 3.697 11 O -0.455 6.455 12 C -0.089 4.089 13 C -0.221 4.221 14 C -0.138 4.138 15 C -0.168 4.168 16 C 0.310 3.690 17 O -0.484 6.484 18 N -0.352 5.352 19 C -0.005 4.005 20 N -0.370 5.370 21 C -0.341 4.341 22 H 0.097 0.903 23 C -0.275 4.275 24 N -0.624 5.624 25 Si 0.789 3.211 26 H -0.219 1.219 27 H -0.232 1.232 28 H -0.192 1.192 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.062 0.938 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.125 0.875 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.141 0.859 49 H 0.124 0.876 50 H 0.248 0.752 51 H 0.144 0.856 52 H 0.084 0.916 53 H 0.199 0.801 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -20.577 -11.570 3.785 23.908 hybrid contribution 1.578 0.715 -0.256 1.751 sum -18.999 -10.855 3.529 22.164 Atomic orbital electron populations 1.21820 0.93329 1.02255 1.01853 1.21669 0.96374 0.96161 0.98795 1.21758 1.01393 0.96283 1.00025 1.20476 0.83000 0.93778 0.95638 0.93245 1.22072 1.01881 0.95087 0.96763 1.21314 0.99510 0.80724 0.98345 1.47919 1.18466 1.06669 1.60823 1.22765 0.82050 1.04257 1.00040 1.20817 0.85179 0.87048 0.76643 1.90816 1.20382 1.83844 1.50481 1.20982 0.97023 0.91507 0.99396 1.22465 1.03135 1.03690 0.92775 1.21468 0.97496 0.92516 1.02297 1.21704 0.93062 0.97980 1.04045 1.20424 0.87518 0.83270 0.77803 1.90752 1.74218 1.28966 1.54446 1.45269 1.21083 1.05898 1.62993 1.21685 0.98027 0.82842 0.97898 1.42706 1.01383 1.19684 1.73276 1.19515 0.88871 0.96458 1.29211 0.90319 1.25443 0.97804 1.00077 1.04151 1.69860 1.06064 1.32001 1.54488 0.85342 0.78049 0.80266 0.77434 1.21915 1.23171 1.19218 0.92117 0.92755 0.91276 0.94239 0.93868 0.93390 0.93471 0.94577 0.87932 0.89095 0.93778 0.90486 0.88718 0.87892 0.91992 0.87504 0.90390 0.90643 0.92107 0.85941 0.87568 0.75156 0.85551 0.91574 0.80149 0.94744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.85 71.98 0.64 -2.39 16 2 C -0.11 -3.53 2.69 -10.79 -0.03 -3.56 16 3 C -0.14 -4.87 8.26 71.98 0.59 -4.28 16 4 C 0.18 6.43 2.02 44.99 0.09 6.52 16 5 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 6 C -0.12 -3.44 4.86 30.59 0.15 -3.29 16 7 C 0.12 3.64 5.33 86.38 0.46 4.10 16 8 N -0.61 -13.13 2.87 -846.77 -2.43 -15.56 16 9 C 0.05 0.46 8.56 127.77 1.09 1.55 16 10 C 0.52 13.69 6.46 87.66 0.57 14.25 16 11 O -0.58 -23.08 15.50 -3.04 -0.05 -23.12 16 12 C -0.09 -1.46 0.49 -52.84 -0.03 -1.49 16 13 C -0.16 -1.87 7.45 71.98 0.54 -1.33 16 14 C -0.10 -2.02 4.31 30.73 0.13 -1.88 16 15 C -0.13 -2.12 5.39 29.71 0.16 -1.96 16 16 C 0.52 10.11 6.91 87.71 0.61 10.72 16 17 O -0.60 -16.65 17.78 -3.03 -0.05 -16.70 16 18 N -0.70 -9.41 5.32 -467.32 -2.49 -11.90 16 19 C 0.12 1.46 5.60 86.49 0.48 1.95 16 20 N -0.73 -35.78 4.45 -322.93 -1.44 -37.22 16 21 C -0.21 -11.18 7.57 84.03 0.64 -10.54 16 22 H 0.08 4.02 7.40 -2.91 -0.02 4.00 16 23 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 24 N -0.97 -61.78 13.06 21.65 0.28 -61.49 16 25 Si 0.96 46.95 29.55 68.60 2.03 48.98 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 27 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 28 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.28 6.32 -2.39 -0.02 1.26 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.90 6.01 -2.38 -0.01 1.89 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 2.09 6.17 -2.39 -0.01 2.07 16 38 H 0.09 2.28 8.07 -2.39 -0.02 2.26 16 39 H 0.04 1.85 6.96 -2.39 -0.02 1.83 16 40 H 0.08 0.55 7.16 -2.39 -0.02 0.54 16 41 H 0.09 0.59 8.05 -2.39 -0.02 0.57 16 42 H 0.10 0.48 2.98 -2.38 -0.01 0.47 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.11 0.73 3.76 -2.39 -0.01 0.72 16 45 H 0.08 0.76 5.81 -2.39 -0.01 0.75 16 46 H 0.07 1.74 7.97 -2.39 -0.02 1.72 16 47 H 0.06 1.45 8.13 -2.38 -0.02 1.43 16 48 H 0.12 1.56 6.96 -2.38 -0.02 1.55 16 49 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.41 4.30 8.80 -92.71 -0.82 3.48 16 51 H 0.13 0.69 5.16 -2.39 -0.01 0.68 16 52 H 0.07 1.00 8.11 -2.39 -0.02 0.98 16 53 H 0.37 20.65 7.80 -92.71 -0.72 19.93 16 54 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -81.51 403.27 1.79 -79.71 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: -0.62 Total: 33.31 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 6.56 Total: 3.99 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -6.08 Total: -126.17 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.10 Total: -39.83 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -81.51 1.79 -79.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282563391.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.883 kcal (2) G-P(sol) polarization free energy of solvation -81.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds