Wall clock time and date at job start Tue Mar 31 2020 22:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47360 * 2 1 4 4 C 1.52991 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47675 * 55.00124 * 4 3 2 6 6 C 1.53005 * 109.47293 * 294.99834 * 4 3 2 7 7 C 1.50707 * 109.47061 * 175.00175 * 4 3 2 8 8 O 1.21272 * 119.99823 * 0.02562 * 7 4 3 9 9 N 1.34775 * 119.99890 * 179.97438 * 7 4 3 10 10 C 1.46496 * 119.99926 * 179.97438 * 9 7 4 11 11 H 1.09003 * 110.64161 * 36.70177 * 10 9 7 12 12 C 1.54937 * 110.72675 * 273.55147 * 10 9 7 13 13 N 1.48538 * 103.22877 * 204.22655 * 12 10 9 14 14 C 1.46898 * 111.00157 * 159.71702 * 13 12 10 15 15 C 1.50698 * 109.47296 * 183.58934 * 14 13 12 16 16 O 1.21294 * 119.99520 * 354.03995 * 15 14 13 17 17 N 1.34769 * 120.00066 * 174.04341 * 15 14 13 18 18 C 1.37103 * 119.99820 * 179.97438 * 17 15 14 19 19 H 1.07995 * 120.00054 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99714 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99716 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00110 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47396 * 89.99705 * 22 20 18 24 24 H 1.48499 * 109.47081 * 209.99730 * 22 20 18 25 25 H 1.48494 * 109.47383 * 329.99517 * 22 20 18 26 26 C 1.47902 * 105.81927 * 39.20456 * 13 12 10 27 27 C 1.53998 * 107.05828 * 334.67080 * 26 13 12 28 28 C 1.53000 * 110.30865 * 242.30914 * 27 26 13 29 29 C 1.53001 * 110.30830 * 120.14119 * 27 26 13 30 30 H 1.09000 * 109.47095 * 299.99899 * 1 2 3 31 31 H 1.09001 * 109.46599 * 59.99831 * 1 2 3 32 32 H 1.09000 * 109.47155 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47095 * 240.00101 * 2 1 3 34 34 H 1.09002 * 109.47049 * 119.99882 * 2 1 3 35 35 H 1.09002 * 109.46943 * 299.99947 * 3 2 1 36 36 H 1.09000 * 109.46933 * 60.00002 * 3 2 1 37 37 H 1.09002 * 109.46728 * 60.00382 * 6 4 3 38 38 H 1.09003 * 109.47044 * 180.02562 * 6 4 3 39 39 H 1.08992 * 109.47264 * 300.00131 * 6 4 3 40 40 H 0.96999 * 120.00513 * 0.02562 * 9 7 4 41 41 H 1.09005 * 110.66647 * 322.66142 * 12 10 9 42 42 H 1.08999 * 110.67079 * 85.62416 * 12 10 9 43 43 H 1.09006 * 109.47047 * 303.59223 * 14 13 12 44 44 H 1.08998 * 109.46926 * 63.58695 * 14 13 12 45 45 H 0.96998 * 120.00213 * 359.97438 * 17 15 14 46 46 H 0.97002 * 119.99688 * 179.97438 * 21 20 18 47 47 H 1.09005 * 109.92100 * 94.02224 * 26 13 12 48 48 H 1.08999 * 109.91793 * 215.32246 * 26 13 12 49 49 H 1.09005 * 109.47123 * 175.71593 * 28 27 26 50 50 H 1.08997 * 109.46970 * 295.71648 * 28 27 26 51 51 H 1.09004 * 109.47121 * 55.71477 * 28 27 26 52 52 H 1.08998 * 109.47282 * 304.28027 * 29 27 26 53 53 H 1.09001 * 109.47090 * 64.28301 * 29 27 26 54 54 H 1.09005 * 109.46825 * 184.28149 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0806 0.8327 1.3064 7 6 4.0723 2.8580 -0.1244 8 8 3.2842 3.7763 -0.2038 9 7 5.3974 3.1033 -0.1459 10 6 5.8857 4.4792 -0.2668 11 1 5.2427 5.1650 0.2848 12 6 5.9840 4.8973 -1.7554 13 7 7.0022 5.9787 -1.7383 14 6 7.5827 6.1764 -3.0731 15 6 8.6705 7.2168 -2.9987 16 8 8.8635 7.8193 -1.9639 17 7 9.4286 7.4776 -4.0820 18 6 10.4179 8.4244 -4.0145 19 1 10.5893 8.9615 -3.0934 20 6 11.1999 8.6930 -5.1312 21 7 12.1478 9.6009 -5.0666 22 14 10.9029 7.7645 -6.7246 23 1 9.9118 8.5011 -7.5495 24 1 12.1796 7.6457 -7.4737 25 1 10.3812 6.4085 -6.4176 26 6 8.0336 5.5460 -0.7705 27 6 7.3494 4.5849 0.2194 28 6 7.3981 5.1592 1.6366 29 6 8.0232 3.2119 0.1781 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6768 1.9564 -0.8900 36 1 1.6768 1.9564 0.8900 37 1 3.7173 -0.1911 1.3960 38 1 5.1706 0.8331 1.3061 39 1 3.7177 1.4219 2.1484 40 1 6.0278 2.3688 -0.0820 41 1 6.3209 4.0613 -2.3684 42 1 5.0257 5.2735 -2.1135 43 1 8.0031 5.2360 -3.4295 44 1 6.8063 6.5111 -3.7610 45 1 9.2744 6.9955 -4.9094 46 1 12.6939 9.7881 -5.8461 47 1 8.8393 5.0297 -1.2925 48 1 8.4276 6.4105 -0.2364 49 1 6.8450 4.5067 2.3123 50 1 8.4350 5.2278 1.9655 51 1 6.9488 6.1524 1.6419 52 1 8.0142 2.8333 -0.8439 53 1 9.0532 3.3021 0.5232 54 1 7.4821 2.5221 0.8259 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282798384.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:54 Heat of formation + Delta-G solvation = -105.393137 kcal Electronic energy + Delta-G solvation = -30583.403545 eV Core-core repulsion = 26553.589759 eV Total energy + Delta-G solvation = -4029.813786 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.70780 -40.57809 -39.59116 -36.87626 -36.25494 -35.64646 -34.41167 -33.74956 -32.79020 -30.45899 -28.53905 -28.37906 -27.46964 -26.83086 -25.59860 -24.41148 -22.65453 -21.74493 -21.28715 -20.81552 -20.32157 -20.03108 -18.08960 -17.69493 -17.43184 -16.79416 -16.72383 -16.49984 -16.16814 -15.63530 -15.54223 -15.33702 -15.13755 -14.86099 -14.71414 -14.54338 -14.33678 -14.25721 -13.98463 -13.91627 -13.59337 -13.43054 -13.24140 -13.14766 -13.07362 -12.92265 -12.70476 -12.63804 -12.44158 -12.39857 -12.11159 -11.98970 -11.91260 -11.81799 -11.78234 -11.70751 -11.55762 -11.48221 -11.37382 -10.70260 -10.43167 -10.25512 -10.06574 -9.36645 -8.42213 -6.02986 1.28460 1.34451 1.42906 1.66761 1.92765 2.07634 2.21740 2.70454 3.12985 3.16964 3.42175 3.54612 3.74098 3.82178 3.84830 4.00195 4.08035 4.18387 4.21299 4.28623 4.30139 4.33462 4.40519 4.44230 4.44809 4.61961 4.64384 4.71146 4.76441 4.82096 4.83509 4.90123 4.91456 4.94073 4.99820 5.02258 5.06414 5.15620 5.17692 5.27145 5.29590 5.33076 5.36529 5.45527 5.47976 5.51407 5.54796 5.84783 5.91219 5.98973 6.57258 6.58447 6.86860 7.29245 7.37717 7.94442 8.75319 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.002175 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.805355 B =12870.447585 C =13633.779633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.100 4.100 4 C -0.104 4.104 5 H 0.120 0.880 6 C -0.143 4.143 7 C 0.511 3.489 8 O -0.583 6.583 9 N -0.707 5.707 10 C 0.160 3.840 11 H 0.077 0.923 12 C 0.031 3.969 13 N -0.516 5.516 14 C 0.046 3.954 15 C 0.451 3.549 16 O -0.604 6.604 17 N -0.590 5.590 18 C -0.327 4.327 19 H 0.056 0.944 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.259 1.259 24 H -0.274 1.274 25 H -0.232 1.232 26 C 0.057 3.943 27 C -0.074 4.074 28 C -0.133 4.133 29 C -0.144 4.144 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.416 0.584 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.116 0.884 45 H 0.389 0.611 46 H 0.279 0.721 47 H 0.040 0.960 48 H 0.060 0.940 49 H 0.072 0.928 50 H 0.062 0.938 51 H 0.041 0.959 52 H 0.066 0.934 53 H 0.067 0.933 54 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.439 -28.462 8.460 34.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.138 4.138 4 C -0.125 4.125 5 H 0.138 0.862 6 C -0.201 4.201 7 C 0.299 3.701 8 O -0.463 6.463 9 N -0.363 5.363 10 C 0.054 3.946 11 H 0.095 0.905 12 C -0.097 4.097 13 N -0.241 5.241 14 C -0.085 4.085 15 C 0.238 3.762 16 O -0.488 6.488 17 N -0.232 5.232 18 C -0.456 4.456 19 H 0.074 0.926 20 C -0.213 4.213 21 N -0.574 5.574 22 Si 0.784 3.216 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.155 1.155 26 C -0.071 4.071 27 C -0.075 4.075 28 C -0.190 4.190 29 C -0.201 4.201 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.257 0.743 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.133 0.867 45 H 0.224 0.776 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.078 0.922 49 H 0.091 0.909 50 H 0.081 0.919 51 H 0.061 0.939 52 H 0.085 0.915 53 H 0.086 0.914 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.914 -26.796 9.167 33.511 hybrid contribution 1.002 -0.102 -1.270 1.620 sum -16.913 -26.898 7.897 32.740 Atomic orbital electron populations 1.21791 0.96075 1.02002 1.01478 1.21576 0.95797 0.95191 1.03143 1.21398 0.92857 0.97697 1.01829 1.21392 0.97317 0.91229 1.02571 0.86173 1.21861 1.02019 1.02044 0.94156 1.21427 0.81999 0.92392 0.74265 1.90707 1.56494 1.48131 1.50938 1.46125 1.07250 1.08535 1.74341 1.21570 0.94380 0.83923 0.94762 0.90480 1.23586 0.95893 0.92835 0.97417 1.64390 1.12413 1.41318 1.05938 1.22053 0.96174 0.97366 0.92913 1.20750 0.84846 0.86865 0.83721 1.90543 1.72141 1.54468 1.31605 1.42015 1.31793 1.36817 1.12618 1.18989 1.10937 1.16029 0.99647 0.92631 1.26099 0.94954 0.97716 1.02543 1.69805 1.21393 1.33668 1.32524 0.85377 0.79153 0.79885 0.77187 1.18319 1.19872 1.15505 1.22912 0.93159 0.97335 0.93725 1.21622 0.93213 0.96784 0.95852 1.21814 1.02390 1.00431 0.94380 1.21927 1.01275 0.93999 1.02886 0.93187 0.93415 0.91716 0.90989 0.90380 0.93171 0.92979 0.89266 0.90675 0.93184 0.74308 0.91569 0.90601 0.90074 0.86655 0.77577 0.91142 0.94145 0.92162 0.90865 0.91886 0.93935 0.91531 0.91351 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.91 71.98 0.71 -0.84 16 2 C -0.12 -1.06 5.69 30.60 0.17 -0.88 16 3 C -0.10 -1.39 4.03 30.59 0.12 -1.26 16 4 C -0.10 -1.16 2.73 -11.54 -0.03 -1.19 16 5 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 6 C -0.14 -0.98 8.85 71.98 0.64 -0.34 16 7 C 0.51 9.79 7.15 87.66 0.63 10.42 16 8 O -0.58 -17.11 15.64 -3.00 -0.05 -17.15 16 9 N -0.71 -11.20 4.88 -436.84 -2.13 -13.33 16 10 C 0.16 3.62 2.76 46.20 0.13 3.74 16 11 H 0.08 2.20 7.42 -2.39 -0.02 2.19 16 12 C 0.03 0.79 6.24 86.65 0.54 1.33 16 13 N -0.52 -16.77 5.12 -887.54 -4.54 -21.31 16 14 C 0.05 1.51 5.30 85.56 0.45 1.97 16 15 C 0.45 20.80 7.39 87.66 0.65 21.45 16 16 O -0.60 -33.81 14.10 -3.07 -0.04 -33.86 16 17 N -0.59 -28.20 5.09 -306.99 -1.56 -29.76 16 18 C -0.33 -19.28 10.16 84.04 0.85 -18.42 16 19 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 20 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 21 N -0.93 -56.46 13.96 21.66 0.30 -56.16 16 22 Si 0.96 38.93 27.74 68.60 1.90 40.84 16 23 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 26 C 0.06 1.79 4.71 86.45 0.41 2.19 16 27 C -0.07 -1.60 0.95 -51.30 -0.05 -1.64 16 28 C -0.13 -2.87 8.22 71.98 0.59 -2.28 16 29 C -0.14 -2.02 7.10 71.98 0.51 -1.51 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.08 0.49 6.57 -2.39 -0.02 0.47 16 35 H 0.05 0.90 7.96 -2.39 -0.02 0.89 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.09 0.32 6.57 -2.39 -0.02 0.30 16 38 H 0.07 0.29 7.56 -2.39 -0.02 0.27 16 39 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.42 3.94 5.20 -92.71 -0.48 3.46 16 41 H 0.07 1.37 7.95 -2.38 -0.02 1.35 16 42 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.08 2.14 8.00 -2.38 -0.02 2.12 16 44 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 45 H 0.39 15.40 5.76 -92.71 -0.53 14.86 16 46 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 47 H 0.04 1.27 7.25 -2.38 -0.02 1.25 16 48 H 0.06 2.40 6.57 -2.39 -0.02 2.39 16 49 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 50 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 52 H 0.07 0.85 8.10 -2.39 -0.02 0.83 16 53 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 54 H 0.09 0.73 6.70 -2.38 -0.02 0.72 16 Total: -1.00 -81.80 417.09 0.48 -81.32 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: -0.19 Total: 37.03 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 6.80 Total: 12.38 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -7.93 Total: -120.56 kcal Atomic # 8 Polarization: -50.92 SS G_CDS: -0.09 Total: -51.01 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.90 Total: 40.84 kcal Total: -81.80 0.48 -81.32 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282798384.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.077 kcal (2) G-P(sol) polarization free energy of solvation -81.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds