Wall clock time and date at job start Tue Mar 31 2020 22:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47630 * 2 1 4 4 C 1.52995 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47349 * 55.00062 * 4 3 2 6 6 C 1.53007 * 109.47349 * 295.00284 * 4 3 2 7 7 C 1.50695 * 109.47481 * 175.00170 * 4 3 2 8 8 O 1.21289 * 119.99644 * 0.02562 * 7 4 3 9 9 N 1.34773 * 120.00555 * 179.97438 * 7 4 3 10 10 C 1.46501 * 119.99925 * 179.97438 * 9 7 4 11 11 H 1.08993 * 110.29404 * 327.13075 * 10 9 7 12 12 C 1.54374 * 110.32160 * 89.36871 * 10 9 7 13 13 N 1.48567 * 104.59834 * 142.74629 * 12 10 9 14 14 C 1.46900 * 111.00034 * 200.95936 * 13 12 10 15 15 C 1.50696 * 109.47148 * 285.41588 * 14 13 12 16 16 O 1.21293 * 119.99810 * 0.02562 * 15 14 13 17 17 N 1.34770 * 119.99923 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00181 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99646 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00131 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00326 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99878 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47680 * 89.99601 * 22 20 18 24 24 H 1.48498 * 109.47187 * 209.99469 * 22 20 18 25 25 H 1.48496 * 109.47403 * 329.99242 * 22 20 18 26 26 C 1.48566 * 104.21746 * 320.51483 * 13 12 10 27 27 C 1.54266 * 110.32323 * 204.99841 * 10 9 7 28 28 C 1.53003 * 110.31910 * 122.20935 * 27 10 9 29 29 C 1.53003 * 110.32462 * 0.02562 * 27 10 9 30 30 H 1.09009 * 109.47145 * 59.99708 * 1 2 3 31 31 H 1.08993 * 109.47515 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47286 * 300.00292 * 1 2 3 33 33 H 1.09000 * 109.46871 * 239.99380 * 2 1 3 34 34 H 1.09009 * 109.46754 * 120.00664 * 2 1 3 35 35 H 1.09001 * 109.46799 * 60.00012 * 3 2 1 36 36 H 1.08999 * 109.46957 * 299.99788 * 3 2 1 37 37 H 1.09001 * 109.47192 * 60.00011 * 6 4 3 38 38 H 1.08997 * 109.47206 * 180.02562 * 6 4 3 39 39 H 1.09002 * 109.46676 * 299.99625 * 6 4 3 40 40 H 0.97004 * 120.00011 * 0.02562 * 9 7 4 41 41 H 1.09004 * 110.41229 * 23.96752 * 12 10 9 42 42 H 1.08997 * 110.41100 * 261.52361 * 12 10 9 43 43 H 1.08997 * 109.47344 * 45.42048 * 14 13 12 44 44 H 1.09001 * 109.46517 * 165.41455 * 14 13 12 45 45 H 0.96996 * 120.00600 * 0.02562 * 17 15 14 46 46 H 0.97000 * 120.00337 * 179.97438 * 21 20 18 47 47 H 1.08996 * 110.40686 * 158.26165 * 26 13 12 48 48 H 1.08998 * 110.41149 * 280.70313 * 26 13 12 49 49 H 1.09002 * 109.47008 * 177.09503 * 28 27 10 50 50 H 1.08998 * 109.47781 * 297.08935 * 28 27 10 51 51 H 1.08996 * 109.47188 * 57.09820 * 28 27 10 52 52 H 1.08998 * 109.46996 * 302.90550 * 29 27 10 53 53 H 1.09003 * 109.47432 * 62.90310 * 29 27 10 54 54 H 1.08991 * 109.47510 * 182.90686 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 0.0006 5 1 3.9337 0.8527 -0.8409 6 6 4.0795 0.8327 1.3083 7 6 4.0726 2.8576 -0.1231 8 8 3.2845 3.7760 -0.2035 9 7 5.3977 3.1029 -0.1436 10 6 5.8861 4.4788 -0.2645 11 1 5.2031 5.0702 -0.8742 12 6 6.0485 5.1148 1.1328 13 7 7.2706 5.9524 1.0232 14 6 7.8426 6.2250 2.3485 15 6 6.9955 7.2480 3.0605 16 8 6.0117 7.7047 2.5174 17 7 7.3309 7.6554 4.3005 18 6 6.5600 8.5858 4.9485 19 1 5.6840 8.9924 4.4650 20 6 6.9062 9.0062 6.2268 21 7 7.9723 8.5118 6.8149 22 14 5.8553 10.2732 7.1099 23 1 4.7992 9.5820 7.8922 24 1 6.7082 11.0712 8.0269 25 1 5.2232 11.1737 6.1127 26 6 8.1997 5.1363 0.1999 27 6 7.3014 4.4929 -0.8781 28 6 7.3182 5.3348 -2.1556 29 6 7.7661 3.0658 -1.1752 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5140 0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.6768 1.9562 -0.8900 37 1 3.7161 -0.1910 1.3978 38 1 5.1695 0.8331 1.3089 39 1 3.7159 1.4224 2.1499 40 1 6.0280 2.3684 -0.0789 41 1 6.1842 4.3415 1.8890 42 1 5.1836 5.7337 1.3716 43 1 7.8658 5.3039 2.9307 44 1 8.8565 6.6085 2.2346 45 1 8.1178 7.2905 4.7347 46 1 8.2142 8.8056 7.7072 47 1 8.9545 5.7714 -0.2637 48 1 8.6720 4.3664 0.8101 49 1 8.3338 5.3780 -2.5490 50 1 6.6602 4.8825 -2.8976 51 1 6.9727 6.3437 -1.9304 52 1 7.7361 2.4758 -0.2592 53 1 7.1074 2.6165 -1.9185 54 1 8.7857 3.0883 -1.5596 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282798385.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:58 Heat of formation + Delta-G solvation = -109.916062 kcal Electronic energy + Delta-G solvation = -30750.807852 eV Core-core repulsion = 26720.797937 eV Total energy + Delta-G solvation = -4030.009915 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.70401 -40.44166 -39.56418 -36.91979 -36.22014 -35.65458 -34.39238 -33.28872 -32.81603 -30.40181 -28.66905 -28.22666 -27.52710 -26.74959 -25.60041 -24.43535 -22.75785 -21.87074 -21.09870 -20.83680 -20.10892 -19.79841 -18.22498 -17.70426 -17.42761 -16.66513 -16.57696 -16.42054 -16.15953 -15.88374 -15.67032 -15.45344 -15.04614 -14.98732 -14.87210 -14.38084 -14.14087 -14.11574 -13.96556 -13.60464 -13.53611 -13.36867 -13.18566 -13.06960 -13.01229 -12.80605 -12.75425 -12.61840 -12.44856 -12.37997 -12.16878 -12.14852 -11.90835 -11.83730 -11.77518 -11.73665 -11.56187 -11.49124 -11.41288 -10.74069 -10.35886 -10.13275 -10.02606 -9.39098 -8.48900 -5.97413 1.34938 1.38299 1.51324 1.62032 2.03665 2.10213 2.27118 2.84743 3.16946 3.31723 3.45936 3.60448 3.69377 3.80205 3.88755 3.95494 4.13770 4.20689 4.27196 4.29185 4.35435 4.36104 4.38045 4.39561 4.49514 4.60642 4.67425 4.73501 4.77327 4.79192 4.84586 4.89332 4.93133 4.99016 4.99837 5.02750 5.05707 5.12253 5.17947 5.22352 5.29384 5.32510 5.38245 5.40760 5.43599 5.44952 5.50859 5.80307 5.91475 6.07100 6.54291 6.59252 7.11442 7.27495 7.54379 8.11937 8.68633 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010012 B = 0.002712 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.852676 B =10321.760009 C =12281.926449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.102 4.102 4 C -0.100 4.100 5 H 0.130 0.870 6 C -0.144 4.144 7 C 0.504 3.496 8 O -0.590 6.590 9 N -0.708 5.708 10 C 0.155 3.845 11 H 0.068 0.932 12 C 0.038 3.962 13 N -0.507 5.507 14 C 0.050 3.950 15 C 0.438 3.562 16 O -0.619 6.619 17 N -0.574 5.574 18 C -0.333 4.333 19 H 0.073 0.927 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.266 1.266 25 H -0.276 1.276 26 C 0.038 3.962 27 C -0.065 4.065 28 C -0.132 4.132 29 C -0.139 4.139 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.417 0.583 41 H 0.044 0.956 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.116 0.884 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.096 0.904 48 H 0.068 0.932 49 H 0.081 0.919 50 H 0.059 0.941 51 H 0.039 0.961 52 H 0.068 0.932 53 H 0.072 0.928 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.128 -23.652 -16.054 28.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.140 4.140 4 C -0.121 4.121 5 H 0.148 0.852 6 C -0.202 4.202 7 C 0.293 3.707 8 O -0.469 6.469 9 N -0.363 5.363 10 C 0.049 3.951 11 H 0.086 0.914 12 C -0.091 4.091 13 N -0.231 5.231 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.505 6.505 17 N -0.212 5.212 18 C -0.463 4.463 19 H 0.091 0.909 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.814 3.186 23 H -0.197 1.197 24 H -0.191 1.191 25 H -0.201 1.201 26 C -0.089 4.089 27 C -0.066 4.066 28 C -0.189 4.189 29 C -0.196 4.196 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.259 0.741 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.134 0.866 45 H 0.231 0.769 46 H 0.088 0.912 47 H 0.114 0.886 48 H 0.086 0.914 49 H 0.100 0.900 50 H 0.078 0.922 51 H 0.058 0.942 52 H 0.087 0.913 53 H 0.091 0.909 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.080 -22.143 -16.518 27.626 hybrid contribution -0.062 0.303 1.564 1.594 sum -0.142 -21.841 -14.954 26.470 Atomic orbital electron populations 1.21796 0.96082 1.02126 1.01378 1.21566 0.95802 0.94790 1.03336 1.21417 0.93022 0.98007 1.01558 1.21382 0.97235 0.90979 1.02544 0.85245 1.21869 1.02046 1.02121 0.94120 1.21588 0.82298 0.92557 0.74289 1.90725 1.56741 1.48455 1.51022 1.46214 1.07117 1.08744 1.74233 1.21523 0.96326 0.82835 0.94423 0.91392 1.23296 0.94005 0.94463 0.97343 1.64969 1.04583 1.41112 1.12422 1.21918 0.98565 0.97388 0.90328 1.20885 0.87693 0.86487 0.82384 1.90508 1.31219 1.61297 1.67487 1.41909 1.26757 1.38404 1.14169 1.19605 1.08799 1.19038 0.98825 0.90877 1.25997 0.98044 1.00247 0.96844 1.69660 1.25784 1.44582 1.15973 0.84967 0.77933 0.77817 0.77850 1.19676 1.19086 1.20090 1.23457 0.95053 0.96050 0.94314 1.21521 0.91352 0.98176 0.95523 1.21802 1.03074 0.98756 0.95262 1.21871 1.03052 0.92440 1.02276 0.93242 0.91364 0.93654 0.90319 0.90528 0.93871 0.92979 0.88729 0.90608 0.94246 0.74142 0.93742 0.94290 0.91063 0.86579 0.76937 0.91233 0.88568 0.91409 0.90018 0.92169 0.94211 0.91327 0.90887 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.91 71.98 0.71 -1.39 16 2 C -0.12 -1.45 5.69 30.59 0.17 -1.28 16 3 C -0.10 -1.93 4.03 30.59 0.12 -1.81 16 4 C -0.10 -1.60 2.72 -11.54 -0.03 -1.63 16 5 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 6 C -0.14 -1.82 8.85 71.98 0.64 -1.18 16 7 C 0.50 12.79 7.15 87.66 0.63 13.41 16 8 O -0.59 -21.97 15.57 -3.06 -0.05 -22.02 16 9 N -0.71 -14.64 4.46 -438.30 -1.96 -16.60 16 10 C 0.16 4.21 3.04 45.89 0.14 4.35 16 11 H 0.07 2.32 7.13 -2.39 -0.02 2.31 16 12 C 0.04 1.36 5.64 86.45 0.49 1.85 16 13 N -0.51 -17.20 4.98 -886.06 -4.41 -21.61 16 14 C 0.05 1.78 5.32 85.56 0.46 2.24 16 15 C 0.44 22.19 7.63 87.66 0.67 22.86 16 16 O -0.62 -37.17 14.80 -3.07 -0.05 -37.22 16 17 N -0.57 -30.78 5.29 -306.99 -1.62 -32.40 16 18 C -0.33 -19.76 9.68 84.04 0.81 -18.95 16 19 H 0.07 4.69 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 21 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16 22 Si 0.99 44.55 29.55 68.60 2.03 46.58 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 26 C 0.04 0.84 5.55 86.45 0.48 1.32 16 27 C -0.06 -1.23 1.03 -51.28 -0.05 -1.28 16 28 C -0.13 -2.50 8.23 71.98 0.59 -1.90 16 29 C -0.14 -1.43 7.12 71.98 0.51 -0.92 16 30 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.78 6.56 -2.38 -0.02 0.76 16 35 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 1.17 7.96 -2.39 -0.02 1.15 16 37 H 0.09 0.77 6.56 -2.39 -0.02 0.75 16 38 H 0.07 0.69 7.56 -2.39 -0.02 0.67 16 39 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.42 5.33 5.28 -92.71 -0.49 4.84 16 41 H 0.04 1.48 7.66 -2.38 -0.02 1.46 16 42 H 0.04 1.84 7.24 -2.39 -0.02 1.82 16 43 H 0.07 2.26 7.77 -2.39 -0.02 2.24 16 44 H 0.12 3.56 8.08 -2.39 -0.02 3.54 16 45 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 46 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 47 H 0.10 1.92 7.86 -2.39 -0.02 1.90 16 48 H 0.07 1.20 7.72 -2.39 -0.02 1.18 16 49 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 51 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.07 0.55 6.78 -2.39 -0.02 0.54 16 53 H 0.07 0.65 7.91 -2.39 -0.02 0.64 16 54 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -81.71 421.11 0.70 -81.01 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.34 Total: 37.00 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 6.81 Total: 15.52 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -7.71 Total: -120.88 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -0.09 Total: -59.23 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -81.71 0.70 -81.01 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282798385.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.902 kcal (2) G-P(sol) polarization free energy of solvation -81.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds