Wall clock time and date at job start Tue Mar 31 2020 22:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.46837 * 2 1 4 4 C 1.53004 * 109.47014 * 183.31289 * 3 2 1 5 5 H 1.09005 * 109.47261 * 306.40959 * 4 3 2 6 6 C 1.50705 * 109.47299 * 186.40720 * 4 3 2 7 7 O 1.21277 * 119.99690 * 350.01392 * 6 4 3 8 8 N 1.34780 * 119.99862 * 170.01137 * 6 4 3 9 9 C 1.46492 * 119.99484 * 177.33489 * 8 6 4 10 10 H 1.08997 * 110.27997 * 327.08751 * 9 8 6 11 11 C 1.54594 * 110.39547 * 89.23507 * 9 8 6 12 12 C 1.54940 * 102.92418 * 140.91276 * 11 9 8 13 13 N 1.48531 * 103.22782 * 322.58747 * 12 11 9 14 14 C 1.46893 * 110.99960 * 159.71841 * 13 12 11 15 15 C 1.50703 * 109.47085 * 52.60569 * 14 13 12 16 16 O 1.21287 * 119.99925 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99591 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99339 * 179.72258 * 17 15 14 19 19 H 1.07996 * 120.00349 * 0.28125 * 18 17 15 20 20 C 1.38956 * 119.99610 * 180.27368 * 18 17 15 21 21 N 1.31403 * 120.00210 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99812 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47411 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46857 * 120.00126 * 22 20 18 25 25 H 1.48493 * 109.47347 * 240.00320 * 22 20 18 26 26 C 1.47903 * 105.81820 * 39.20370 * 13 12 11 27 27 C 1.53001 * 109.47433 * 66.40572 * 4 3 2 28 28 C 1.53004 * 109.46859 * 59.69793 * 27 4 3 29 29 C 1.52993 * 109.47465 * 179.70268 * 27 4 3 30 30 H 1.08996 * 109.47738 * 299.99903 * 1 2 3 31 31 H 1.09003 * 109.47679 * 59.99949 * 1 2 3 32 32 H 1.09003 * 109.47144 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47209 * 240.00131 * 2 1 3 34 34 H 1.08997 * 109.47435 * 119.99693 * 2 1 3 35 35 H 1.08993 * 109.47409 * 63.31757 * 3 2 1 36 36 H 1.09001 * 109.47615 * 303.31017 * 3 2 1 37 37 H 0.96991 * 120.00093 * 357.33634 * 8 6 4 38 38 H 1.09006 * 110.72751 * 259.27578 * 11 9 8 39 39 H 1.09004 * 110.72236 * 22.37878 * 11 9 8 40 40 H 1.08999 * 110.66610 * 204.14966 * 12 11 9 41 41 H 1.08997 * 110.66658 * 81.02162 * 12 11 9 42 42 H 1.09002 * 109.47227 * 292.60280 * 14 13 12 43 43 H 1.09002 * 109.47142 * 172.60309 * 14 13 12 44 44 H 0.96996 * 120.00201 * 359.97438 * 17 15 14 45 45 H 0.96999 * 120.00262 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.91445 * 94.02297 * 26 13 12 47 47 H 1.09001 * 109.91788 * 215.31139 * 26 13 12 48 48 H 1.09003 * 109.46929 * 299.70461 * 27 4 3 49 49 H 1.08996 * 109.47130 * 183.15049 * 28 27 4 50 50 H 1.09000 * 109.47468 * 303.15125 * 28 27 4 51 51 H 1.09000 * 109.46964 * 63.15314 * 28 27 4 52 52 H 1.08998 * 109.47193 * 59.35257 * 29 27 4 53 53 H 1.09001 * 109.47351 * 179.35651 * 29 27 4 54 54 H 1.09004 * 109.47318 * 299.35149 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5676 1.4434 -0.0834 5 1 3.9752 0.8178 0.7108 6 6 4.0786 2.8523 0.0748 7 8 3.3028 3.7843 0.0562 8 7 5.3977 3.0765 0.2368 9 6 5.9010 4.4490 0.3319 10 1 5.2964 5.1165 -0.2820 11 6 5.8977 4.9233 1.8033 12 6 7.2131 5.7352 1.9087 13 7 8.1587 4.9614 1.0640 14 6 9.2949 5.7941 0.6476 15 6 9.9197 6.4343 1.8604 16 8 9.4635 6.2178 2.9632 17 7 10.9859 7.2466 1.7196 18 6 11.5507 7.8335 2.8224 19 1 11.1441 7.6414 3.8043 20 6 12.6465 8.6755 2.6768 21 7 13.1410 8.9096 1.4821 22 14 13.4156 9.4758 4.1792 23 1 12.6778 9.0541 5.3971 24 1 14.8356 9.0561 4.2912 25 1 13.3452 10.9529 4.0440 26 6 7.3760 4.5090 -0.1066 27 6 4.0046 0.8919 -1.4420 28 6 3.4263 1.7656 -2.5569 29 6 5.5321 0.8996 -1.5282 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.7259 1.9389 0.9182 36 1 1.6289 1.9733 -0.8588 37 1 6.0136 2.3292 0.2904 38 1 5.0349 5.5592 2.0018 39 1 5.9116 4.0713 2.4832 40 1 7.5610 5.7718 2.9410 41 1 7.0772 6.7411 1.5115 42 1 8.9463 6.5700 -0.0340 43 1 10.0349 5.1729 0.1429 44 1 11.3514 7.4188 0.8378 45 1 13.9062 9.4970 1.3804 46 1 7.4910 5.2178 -0.9266 47 1 7.7114 3.5196 -0.4176 48 1 3.6395 -0.1290 -1.5541 49 1 3.6908 1.3411 -3.5254 50 1 2.3412 1.8052 -2.4618 51 1 3.8350 2.7730 -2.4780 52 1 5.9444 0.2865 -0.7269 53 1 5.8437 0.4961 -2.4916 54 1 5.8965 1.9220 -1.4276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316987380.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:28 Heat of formation + Delta-G solvation = -104.330776 kcal Electronic energy + Delta-G solvation = -30309.618382 eV Core-core repulsion = 26279.850663 eV Total energy + Delta-G solvation = -4029.767719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.59858 -40.60524 -39.13167 -37.62037 -36.09257 -35.51068 -34.46024 -33.33803 -32.14665 -30.41704 -29.51574 -28.33988 -27.80495 -26.08707 -25.35411 -22.92322 -22.58723 -22.21181 -21.51088 -21.06176 -20.15347 -19.86681 -17.98677 -17.60131 -17.44418 -17.05688 -16.74339 -16.38927 -16.24374 -15.98459 -15.58267 -15.46719 -15.09226 -14.88294 -14.64025 -14.47957 -14.44742 -14.04960 -13.85752 -13.61987 -13.40512 -13.34499 -13.05294 -13.01234 -12.85427 -12.76576 -12.70483 -12.61875 -12.40891 -12.36206 -12.27792 -12.12791 -12.03070 -11.81269 -11.79559 -11.66749 -11.47911 -11.39975 -11.19581 -10.61713 -10.28295 -10.02640 -9.90079 -9.37266 -8.47386 -5.95717 1.35889 1.41568 1.55391 1.68499 2.03610 2.18253 2.28759 2.83780 3.19631 3.29184 3.54014 3.69018 3.77043 3.78573 3.86783 4.10217 4.16659 4.22018 4.26046 4.28937 4.36184 4.39898 4.40607 4.47978 4.55029 4.61345 4.65540 4.68554 4.73248 4.77795 4.84297 4.90636 4.92207 5.01684 5.04831 5.07341 5.08416 5.12599 5.23528 5.24733 5.30850 5.40589 5.41328 5.41861 5.49710 5.52904 5.61023 5.81835 5.90670 6.07994 6.58869 6.60135 7.12664 7.30038 7.55146 8.11073 8.70190 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.031517 B = 0.001842 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.205490 B =15193.710850 C =15634.702311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.101 4.101 4 C -0.100 4.100 5 H 0.113 0.887 6 C 0.519 3.481 7 O -0.583 6.583 8 N -0.709 5.709 9 C 0.143 3.857 10 H 0.084 0.916 11 C -0.124 4.124 12 C 0.042 3.958 13 N -0.505 5.505 14 C 0.047 3.953 15 C 0.438 3.562 16 O -0.614 6.614 17 N -0.572 5.572 18 C -0.332 4.332 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.992 3.008 23 H -0.274 1.274 24 H -0.271 1.271 25 H -0.272 1.272 26 C 0.032 3.968 27 C -0.079 4.079 28 C -0.152 4.152 29 C -0.171 4.171 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.415 0.585 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.028 0.972 42 H 0.069 0.931 43 H 0.115 0.885 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.067 0.933 47 H 0.107 0.893 48 H 0.104 0.896 49 H 0.068 0.932 50 H 0.057 0.943 51 H 0.032 0.968 52 H 0.073 0.927 53 H 0.068 0.932 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.648 -19.610 -10.615 29.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.139 4.139 4 C -0.121 4.121 5 H 0.131 0.869 6 C 0.307 3.693 7 O -0.462 6.462 8 N -0.363 5.363 9 C 0.037 3.963 10 H 0.102 0.898 11 C -0.164 4.164 12 C -0.086 4.086 13 N -0.230 5.230 14 C -0.085 4.085 15 C 0.226 3.774 16 O -0.500 6.500 17 N -0.209 5.209 18 C -0.461 4.461 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.096 4.096 27 C -0.098 4.098 28 C -0.209 4.209 29 C -0.229 4.229 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.255 0.745 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.133 0.867 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.125 0.875 48 H 0.122 0.878 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.051 0.949 52 H 0.092 0.908 53 H 0.087 0.913 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.087 -19.415 -9.697 28.901 hybrid contribution 0.720 1.546 -0.003 1.706 sum -18.367 -17.869 -9.699 27.399 Atomic orbital electron populations 1.21777 0.95887 1.02012 1.01511 1.21565 0.95912 0.95203 1.03026 1.21460 0.92618 0.97834 1.01987 1.21535 0.97612 0.91847 1.01108 0.86881 1.21202 0.81778 0.92236 0.74092 1.90677 1.56763 1.46859 1.51926 1.46399 1.08247 1.08216 1.73436 1.21614 0.94270 0.84464 0.95995 0.89809 1.22859 0.96398 1.00107 0.97012 1.23244 0.91010 0.94202 1.00179 1.64622 1.06981 1.35750 1.15615 1.22029 0.95423 0.96819 0.94202 1.20724 0.82717 0.82653 0.91306 1.90442 1.64599 1.65879 1.29107 1.41920 1.27495 1.41716 1.09811 1.19694 1.12246 1.25336 0.88858 0.90276 1.26020 0.96868 0.97502 1.00840 1.69670 1.25314 1.37930 1.23154 0.84880 0.78021 0.77942 0.77549 1.19855 1.19573 1.19718 1.23256 0.90825 1.03143 0.92334 1.21093 0.96573 1.00638 0.91448 1.21939 1.01127 0.98886 0.98964 1.22263 0.94365 1.02778 1.03472 0.93452 0.93015 0.91736 0.90391 0.91280 0.93423 0.91944 0.74502 0.91334 0.90621 0.90004 0.95336 0.91277 0.86673 0.76999 0.91319 0.91515 0.87467 0.87811 0.91335 0.92393 0.94895 0.90770 0.91314 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.94 16 2 C -0.12 -1.22 5.78 30.59 0.18 -1.04 16 3 C -0.10 -1.54 3.80 30.60 0.12 -1.42 16 4 C -0.10 -1.37 2.07 -11.54 -0.02 -1.40 16 5 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 6 C 0.52 10.87 5.64 87.66 0.49 11.37 16 7 O -0.58 -17.34 15.70 -3.02 -0.05 -17.39 16 8 N -0.71 -13.10 3.61 -438.39 -1.58 -14.68 16 9 C 0.14 3.30 3.32 45.87 0.15 3.45 16 10 H 0.08 2.14 7.60 -2.39 -0.02 2.12 16 11 C -0.12 -3.47 6.78 31.80 0.22 -3.26 16 12 C 0.04 1.43 5.30 86.65 0.46 1.89 16 13 N -0.50 -15.82 5.26 -887.57 -4.67 -20.49 16 14 C 0.05 1.58 5.52 85.56 0.47 2.05 16 15 C 0.44 20.59 7.49 87.66 0.66 21.25 16 16 O -0.61 -33.17 13.10 -3.05 -0.04 -33.21 16 17 N -0.57 -29.13 5.29 -306.98 -1.62 -30.75 16 18 C -0.33 -18.76 9.68 84.04 0.81 -17.94 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 20 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 21 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 22 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 C 0.03 0.72 6.47 86.45 0.56 1.28 16 27 C -0.08 -0.81 2.53 -10.79 -0.03 -0.83 16 28 C -0.15 -2.04 8.63 71.98 0.62 -1.42 16 29 C -0.17 -1.52 7.95 71.98 0.57 -0.94 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 0.60 6.48 -2.38 -0.02 0.58 16 34 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.05 0.91 8.06 -2.39 -0.02 0.90 16 36 H 0.06 1.11 6.03 -2.39 -0.01 1.10 16 37 H 0.42 5.72 6.31 -92.72 -0.58 5.14 16 38 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.08 2.10 8.06 -2.39 -0.02 2.09 16 40 H 0.08 3.49 5.97 -2.39 -0.01 3.47 16 41 H 0.03 1.01 8.02 -2.39 -0.02 0.99 16 42 H 0.07 2.10 7.81 -2.39 -0.02 2.08 16 43 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 44 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 45 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 46 H 0.07 1.36 7.57 -2.39 -0.02 1.34 16 47 H 0.11 1.87 7.65 -2.39 -0.02 1.85 16 48 H 0.10 0.71 6.56 -2.39 -0.02 0.69 16 49 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.06 0.83 6.13 -2.39 -0.01 0.81 16 51 H 0.03 0.59 7.34 -2.39 -0.02 0.57 16 52 H 0.07 0.46 8.13 -2.39 -0.02 0.44 16 53 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 54 H 0.06 0.66 5.39 -2.39 -0.01 0.65 16 Total: -1.00 -70.50 412.96 0.37 -70.13 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: -0.42 Total: 38.66 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 6.44 Total: 11.89 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -7.59 Total: -115.03 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.09 Total: -50.60 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -70.50 0.37 -70.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316987380.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.199 kcal (2) G-P(sol) polarization free energy of solvation -70.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds