Wall clock time and date at job start Tue Mar 31 2020 22:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46805 * 2 1 4 4 C 1.53005 * 109.46805 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47083 * 54.99696 * 4 3 2 6 6 C 1.52996 * 109.47102 * 294.99892 * 4 3 2 7 7 C 1.50700 * 109.47146 * 175.00026 * 4 3 2 8 8 O 1.21284 * 120.00045 * 94.66520 * 7 4 3 9 9 N 1.34775 * 119.99698 * 274.67032 * 7 4 3 10 10 C 1.46923 * 120.63370 * 4.99892 * 9 7 4 11 11 C 1.53624 * 108.54485 * 126.37056 * 10 9 7 12 12 C 1.53041 * 109.24154 * 54.85300 * 11 10 9 13 13 C 1.53039 * 109.54107 * 298.51375 * 12 11 10 14 14 H 1.08994 * 109.52068 * 301.39430 * 13 12 11 15 15 N 1.46897 * 109.49642 * 181.31492 * 13 12 11 16 16 C 1.46894 * 110.99797 * 184.11581 * 15 13 12 17 17 C 1.46905 * 111.00033 * 60.16183 * 15 13 12 18 18 C 1.50702 * 109.46918 * 189.99748 * 17 15 13 19 19 O 1.21292 * 120.00063 * 0.02562 * 18 17 15 20 20 N 1.34777 * 119.99722 * 179.97438 * 18 17 15 21 21 C 1.37093 * 119.99980 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00075 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00125 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00174 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46992 * 89.99976 * 25 23 21 27 27 H 1.48499 * 109.47237 * 210.00407 * 25 23 21 28 28 H 1.48501 * 109.47013 * 330.00297 * 25 23 21 29 29 C 1.46926 * 120.62838 * 185.27989 * 9 7 4 30 30 H 1.09000 * 109.46836 * 60.00180 * 1 2 3 31 31 H 1.08999 * 109.46478 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47174 * 299.99897 * 1 2 3 33 33 H 1.08999 * 109.47174 * 240.00103 * 2 1 3 34 34 H 1.09006 * 109.47220 * 119.99651 * 2 1 3 35 35 H 1.09000 * 109.47277 * 299.99550 * 3 2 1 36 36 H 1.08999 * 109.47170 * 60.00101 * 3 2 1 37 37 H 1.09000 * 109.47281 * 55.30627 * 6 4 3 38 38 H 1.08999 * 109.47292 * 175.31147 * 6 4 3 39 39 H 1.09005 * 109.47283 * 295.30590 * 6 4 3 40 40 H 1.08998 * 109.58708 * 246.20226 * 10 9 7 41 41 H 1.09001 * 109.58853 * 6.62911 * 10 9 7 42 42 H 1.09002 * 109.63411 * 294.86632 * 11 10 9 43 43 H 1.08997 * 109.46386 * 174.74194 * 11 10 9 44 44 H 1.09004 * 109.46040 * 178.48828 * 12 11 10 45 45 H 1.09001 * 109.45514 * 58.53539 * 12 11 10 46 46 H 1.08999 * 109.47476 * 60.00515 * 16 15 13 47 47 H 1.09009 * 109.47520 * 180.02562 * 16 15 13 48 48 H 1.09001 * 109.47443 * 299.99781 * 16 15 13 49 49 H 1.08998 * 109.47267 * 309.99728 * 17 15 13 50 50 H 1.08997 * 109.46861 * 69.99874 * 17 15 13 51 51 H 0.97002 * 120.00295 * 0.02562 * 20 18 17 52 52 H 0.97005 * 119.99568 * 179.97438 * 24 23 21 53 53 H 1.08996 * 109.59036 * 353.37063 * 29 9 7 54 54 H 1.09001 * 109.58838 * 113.79817 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0806 0.8328 1.3064 7 6 4.0723 2.8580 -0.1245 8 8 4.3554 3.4903 0.8710 9 7 4.2068 3.4212 -1.3415 10 6 3.7659 2.7093 -2.5487 11 6 2.8086 3.6210 -3.3313 12 6 3.4990 4.9586 -3.6077 13 6 3.8389 5.6428 -2.2817 14 1 2.9261 5.7952 -1.7060 15 7 4.4731 6.9407 -2.5481 16 6 4.9020 7.5834 -1.2988 17 6 3.5753 7.8187 -3.3106 18 6 4.3362 9.0337 -3.7752 19 8 5.5109 9.1560 -3.4989 20 7 3.7117 9.9839 -4.4987 21 6 4.4039 11.0890 -4.9219 22 1 5.4499 11.1979 -4.6758 23 6 3.7599 12.0689 -5.6673 24 7 2.4871 11.9366 -5.9663 25 14 4.7033 13.5743 -6.2445 26 1 5.3000 13.3036 -7.5772 27 1 3.7775 14.7313 -6.3424 28 1 5.7825 13.8847 -5.2729 29 6 4.8028 4.7563 -1.4867 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8901 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.6503 -0.1602 1.4365 38 1 5.1673 0.7562 1.2715 39 1 3.7879 1.4680 2.1424 40 1 4.6307 2.4669 -3.1664 41 1 3.2490 1.7928 -2.2642 42 1 1.9051 3.7921 -2.7459 43 1 2.5452 3.1454 -4.2761 44 1 2.8326 5.5985 -4.1862 45 1 4.4152 4.7845 -4.1719 46 1 5.6202 6.9419 -0.7881 47 1 5.3678 8.5427 -1.5249 48 1 4.0361 7.7429 -0.6563 49 1 3.1882 7.2798 -4.1753 50 1 2.7461 8.1302 -2.6754 51 1 2.7723 9.8860 -4.7200 52 1 2.0374 12.6209 -6.4864 53 1 4.9704 5.1909 -0.5013 54 1 5.7504 4.6774 -2.0195 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317370199.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:31 Heat of formation + Delta-G solvation = -101.706565 kcal Electronic energy + Delta-G solvation = -30684.602003 eV Core-core repulsion = 26654.948079 eV Total energy + Delta-G solvation = -4029.653924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.62296 -40.46359 -39.11769 -37.07050 -36.90409 -35.83865 -33.47157 -33.29027 -32.80638 -31.30048 -29.47952 -27.68458 -27.25208 -26.32630 -25.62758 -24.12209 -22.94532 -21.90202 -21.27575 -20.85528 -19.86748 -19.64874 -18.57524 -17.82126 -17.17008 -16.67024 -16.53374 -16.33575 -16.22619 -16.00579 -15.64862 -15.45235 -15.28752 -15.14417 -14.72868 -14.66320 -14.25750 -14.06455 -13.95152 -13.78855 -13.69827 -13.51056 -13.37065 -13.05612 -12.91128 -12.78229 -12.75609 -12.66844 -12.42407 -12.35812 -12.13495 -12.12748 -11.98274 -11.86841 -11.82199 -11.61525 -11.46629 -11.41803 -11.35724 -10.66237 -10.29803 -10.00261 -9.69546 -9.30468 -8.46493 -5.94874 1.37606 1.41300 1.53821 1.55870 1.87636 2.04518 2.28857 2.75517 3.19797 3.35051 3.42518 3.70584 3.82752 3.86668 3.93377 3.95788 4.06114 4.16973 4.25777 4.28534 4.31794 4.32790 4.40316 4.47020 4.50744 4.54236 4.56616 4.62311 4.66844 4.77190 4.78615 4.81734 4.87010 4.93612 4.97977 5.04083 5.08823 5.10413 5.13068 5.14413 5.26365 5.32682 5.36206 5.41408 5.43339 5.47624 5.53457 5.83033 6.02755 6.14618 6.39789 6.60699 7.13085 7.13490 7.56134 8.12199 8.70924 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023923 B = 0.002062 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.153881 B =13574.061178 C =14167.068375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.107 4.107 4 C -0.102 4.102 5 H 0.122 0.878 6 C -0.136 4.136 7 C 0.511 3.489 8 O -0.591 6.591 9 N -0.608 5.608 10 C 0.098 3.902 11 C -0.124 4.124 12 C -0.118 4.118 13 C 0.079 3.921 14 H 0.035 0.965 15 N -0.524 5.524 16 C 0.027 3.973 17 C 0.057 3.943 18 C 0.443 3.557 19 O -0.613 6.613 20 N -0.574 5.574 21 C -0.331 4.331 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.274 1.274 29 C 0.123 3.877 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.021 0.979 49 H 0.117 0.883 50 H 0.060 0.940 51 H 0.396 0.604 52 H 0.277 0.723 53 H 0.069 0.931 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 -28.312 6.834 29.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.145 4.145 4 C -0.123 4.123 5 H 0.139 0.861 6 C -0.194 4.194 7 C 0.301 3.699 8 O -0.471 6.471 9 N -0.340 5.340 10 C -0.024 4.024 11 C -0.163 4.163 12 C -0.155 4.155 13 C -0.030 4.030 14 H 0.053 0.947 15 N -0.249 5.249 16 C -0.121 4.121 17 C -0.074 4.074 18 C 0.230 3.770 19 O -0.499 6.499 20 N -0.211 5.211 21 C -0.461 4.461 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.199 1.199 29 C -0.001 4.001 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.134 0.866 42 H 0.085 0.915 43 H 0.126 0.874 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.039 0.961 49 H 0.135 0.865 50 H 0.078 0.922 51 H 0.229 0.771 52 H 0.087 0.913 53 H 0.087 0.913 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.756 -27.863 7.145 29.155 hybrid contribution -0.610 1.691 0.271 1.818 sum -5.366 -26.172 7.416 27.726 Atomic orbital electron populations 1.21790 0.95726 1.02102 1.01684 1.21567 0.95888 0.94753 1.03381 1.21588 0.91298 0.99093 1.02491 1.21422 0.97995 0.90727 1.02141 0.86056 1.21716 1.00924 1.01392 0.95341 1.21499 0.76403 0.90086 0.81944 1.90669 1.52644 1.65710 1.38076 1.48246 1.61025 1.17251 1.07486 1.22261 0.99240 0.95851 0.85000 1.21979 0.97970 0.94391 1.01950 1.21702 1.01678 0.97068 0.95098 1.21970 0.94990 0.88479 0.97552 0.94731 1.61567 1.39971 1.03000 1.20372 1.22420 0.99349 1.00571 0.89805 1.21789 0.93420 0.92372 0.99847 1.20687 0.88110 0.85669 0.82553 1.90465 1.18257 1.80037 1.61136 1.41917 1.12743 1.18678 1.47788 1.19645 0.95982 0.98343 1.32084 0.90343 1.26033 0.96767 1.01752 0.96796 1.69674 1.10222 1.36844 1.39381 0.84933 0.77780 0.77072 0.78579 1.19540 1.19577 1.19925 1.21419 0.95849 0.82605 1.00232 0.92513 0.91871 0.93580 0.90024 0.91180 0.90794 0.93126 0.89034 0.93052 0.93760 0.89649 0.86613 0.91512 0.87375 0.91145 0.90919 0.90799 0.91974 0.96079 0.86522 0.92237 0.77056 0.91323 0.91274 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.91 71.98 0.71 -0.50 16 2 C -0.12 -0.83 5.69 30.60 0.17 -0.66 16 3 C -0.11 -1.20 4.37 30.60 0.13 -1.07 16 4 C -0.10 -1.36 1.85 -11.54 -0.02 -1.38 16 5 H 0.12 0.93 6.73 -2.39 -0.02 0.91 16 6 C -0.14 -1.94 8.68 71.98 0.63 -1.32 16 7 C 0.51 11.51 6.80 87.66 0.60 12.11 16 8 O -0.59 -19.16 15.42 -3.04 -0.05 -19.21 16 9 N -0.61 -12.14 2.97 -818.08 -2.43 -14.57 16 10 C 0.10 1.12 5.95 86.51 0.51 1.64 16 11 C -0.12 -1.54 6.10 30.82 0.19 -1.35 16 12 C -0.12 -2.36 5.00 30.62 0.15 -2.20 16 13 C 0.08 2.06 2.09 44.99 0.09 2.15 16 14 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 15 N -0.52 -17.81 4.37 -901.17 -3.94 -21.75 16 16 C 0.03 0.95 8.75 127.69 1.12 2.07 16 17 C 0.06 2.03 5.27 85.56 0.45 2.48 16 18 C 0.44 21.44 7.47 87.66 0.66 22.09 16 19 O -0.61 -34.31 13.91 -3.07 -0.04 -34.35 16 20 N -0.57 -29.77 5.29 -306.98 -1.62 -31.39 16 21 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 24 N -0.92 -49.82 13.05 21.66 0.28 -49.54 16 25 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 28 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 29 C 0.12 3.15 5.16 86.36 0.45 3.60 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.07 0.47 6.47 -2.38 -0.02 0.46 16 35 H 0.07 0.76 7.19 -2.39 -0.02 0.74 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.80 6.36 -2.39 -0.02 0.79 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.04 0.85 7.69 -2.38 -0.02 0.83 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.12 0.69 4.89 -2.39 -0.01 0.68 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 1.44 6.14 -2.39 -0.01 1.43 16 45 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.07 2.43 6.37 -2.39 -0.02 2.41 16 47 H 0.06 2.68 5.83 -2.38 -0.01 2.67 16 48 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.12 3.61 5.81 -2.39 -0.01 3.59 16 50 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 51 H 0.40 19.47 7.90 -92.71 -0.73 18.73 16 52 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 53 H 0.07 2.13 5.55 -2.39 -0.01 2.11 16 54 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -74.30 410.51 1.52 -72.79 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.16 Total: 33.45 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 7.12 Total: 19.24 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -7.70 Total: -117.25 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -0.09 Total: -53.56 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -74.30 1.52 -72.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317370199.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.919 kcal (2) G-P(sol) polarization free energy of solvation -74.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds