Wall clock time and date at job start Tue Mar 31 2020 22:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47054 * 2 1 4 4 C 1.52995 * 109.47585 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46956 * 305.00013 * 4 3 2 6 6 C 1.52994 * 109.47190 * 64.99411 * 4 3 2 7 7 C 1.50698 * 109.47655 * 185.00286 * 4 3 2 8 8 O 1.21278 * 119.99761 * 333.52889 * 7 4 3 9 9 N 1.34774 * 120.00082 * 153.53390 * 7 4 3 10 10 C 1.46928 * 120.63028 * 184.84580 * 9 7 4 11 11 C 1.53614 * 108.54558 * 126.36482 * 10 9 7 12 12 C 1.53048 * 109.24134 * 54.85779 * 11 10 9 13 13 C 1.53042 * 109.53616 * 298.51095 * 12 11 10 14 14 H 1.09004 * 109.52042 * 301.39705 * 13 12 11 15 15 N 1.46897 * 109.49505 * 181.31843 * 13 12 11 16 16 C 1.46904 * 110.99750 * 184.11862 * 15 13 12 17 17 C 1.46896 * 111.00449 * 60.15948 * 15 13 12 18 18 C 1.50696 * 109.47427 * 189.99824 * 17 15 13 19 19 O 1.21293 * 120.00112 * 0.02562 * 18 17 15 20 20 N 1.34775 * 120.00239 * 180.02562 * 18 17 15 21 21 C 1.37097 * 120.00238 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99993 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00083 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00045 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99970 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46957 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46864 * 120.00709 * 25 23 21 28 28 H 1.48500 * 109.47016 * 240.00634 * 25 23 21 29 29 C 1.46924 * 120.63120 * 5.12142 * 9 7 4 30 30 H 1.09002 * 109.47038 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47189 * 299.99568 * 1 2 3 32 32 H 1.09001 * 109.47476 * 60.00575 * 1 2 3 33 33 H 1.09001 * 109.47007 * 239.99679 * 2 1 3 34 34 H 1.08996 * 109.47102 * 120.00035 * 2 1 3 35 35 H 1.09010 * 109.47100 * 300.00016 * 3 2 1 36 36 H 1.09001 * 109.47475 * 59.99966 * 3 2 1 37 37 H 1.09001 * 109.47467 * 294.95386 * 6 4 3 38 38 H 1.09002 * 109.47150 * 54.95444 * 6 4 3 39 39 H 1.09005 * 109.47533 * 174.95271 * 6 4 3 40 40 H 1.08997 * 109.58767 * 246.20237 * 10 9 7 41 41 H 1.09003 * 109.58392 * 6.62414 * 10 9 7 42 42 H 1.09000 * 109.63649 * 294.86651 * 11 10 9 43 43 H 1.09003 * 109.45868 * 174.74098 * 11 10 9 44 44 H 1.09000 * 109.45704 * 178.49125 * 12 11 10 45 45 H 1.09000 * 109.46109 * 58.53093 * 12 11 10 46 46 H 1.08999 * 109.47272 * 59.99795 * 16 15 13 47 47 H 1.08996 * 109.46849 * 180.02562 * 16 15 13 48 48 H 1.09006 * 109.46606 * 299.99503 * 16 15 13 49 49 H 1.09004 * 109.47341 * 310.00263 * 17 15 13 50 50 H 1.09002 * 109.46804 * 69.99830 * 17 15 13 51 51 H 0.97002 * 119.99705 * 0.02562 * 20 18 17 52 52 H 0.97006 * 120.00411 * 179.97438 * 24 23 21 53 53 H 1.09000 * 109.58826 * 353.37637 * 29 9 7 54 54 H 1.09006 * 109.58454 * 113.65841 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8410 6 6 4.0794 0.8331 -1.3082 7 6 4.0723 2.8579 0.1233 8 8 3.3878 3.7805 -0.2655 9 7 5.2822 3.0985 0.6660 10 6 5.7414 4.4759 0.8908 11 6 6.1579 4.6181 2.3625 12 6 7.1980 3.5466 2.6981 13 6 6.5837 2.1584 2.5036 14 1 5.7075 2.0549 3.1437 15 7 7.5727 1.1310 2.8561 16 6 7.0506 -0.2159 2.5887 17 6 7.9934 1.2639 4.2573 18 6 9.1744 0.3639 4.5147 19 8 9.6220 -0.3205 3.6189 20 7 9.7334 0.3196 5.7403 21 6 10.8075 -0.4995 5.9746 22 1 11.2060 -1.1090 5.1770 23 6 11.3841 -0.5448 7.2380 24 7 10.8996 0.1971 8.2084 25 14 12.8472 -1.6615 7.5575 26 1 13.1974 -2.3873 6.3103 27 1 14.0068 -0.8444 7.9966 28 1 12.5005 -2.6399 8.6194 29 6 6.1697 1.9883 1.0386 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 1.6767 1.9563 0.8900 37 1 3.7919 -0.2172 -1.3558 38 1 3.6438 1.3677 -2.1523 39 1 5.1657 0.9145 -1.3481 40 1 6.5937 4.6870 0.2449 41 1 4.9318 5.1716 0.6699 42 1 5.2857 4.4919 3.0039 43 1 6.5885 5.6063 2.5243 44 1 7.5159 3.6611 3.7344 45 1 8.0595 3.6579 2.0397 46 1 6.8120 -0.3093 1.5292 47 1 7.8025 -0.9572 2.8589 48 1 6.1497 -0.3804 3.1800 49 1 8.2746 2.2982 4.4557 50 1 7.1700 0.9792 4.9124 51 1 9.3752 0.8667 6.4567 52 1 11.3018 0.1652 9.0905 53 1 5.6428 1.0421 0.9152 54 1 7.0551 1.9991 0.4028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317370201.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:34 Heat of formation + Delta-G solvation = -100.461032 kcal Electronic energy + Delta-G solvation = -30837.585771 eV Core-core repulsion = 26807.985857 eV Total energy + Delta-G solvation = -4029.599914 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.62985 -40.41948 -39.12467 -37.14827 -36.64798 -35.77906 -34.02889 -33.25197 -32.54003 -31.19272 -29.44588 -27.60155 -27.17245 -26.48674 -25.47094 -24.44406 -22.77124 -21.90677 -21.19730 -20.78603 -19.90617 -19.74825 -18.48579 -17.83137 -17.07329 -16.65325 -16.50480 -16.40636 -16.09382 -15.96288 -15.59529 -15.46989 -15.31642 -15.20487 -14.93842 -14.54007 -14.30724 -14.04525 -13.90182 -13.76796 -13.63005 -13.40796 -13.33147 -13.12591 -13.03414 -12.82853 -12.71583 -12.62871 -12.39987 -12.34581 -12.15975 -12.10304 -11.91006 -11.88254 -11.79458 -11.66028 -11.55476 -11.43384 -11.38051 -10.62438 -10.24722 -9.97166 -9.71457 -9.21199 -8.44386 -5.92383 1.37739 1.43148 1.54756 1.56927 1.87953 2.08609 2.30191 2.75117 3.22676 3.38078 3.49070 3.63379 3.75623 3.80463 3.96538 3.97922 4.07630 4.20621 4.24739 4.28871 4.30603 4.35238 4.40052 4.46082 4.50780 4.54460 4.61170 4.63478 4.71593 4.76904 4.82476 4.83394 4.88787 4.90478 4.90965 4.99471 5.00674 5.10365 5.12835 5.20299 5.23248 5.28639 5.35821 5.41008 5.44030 5.45842 5.49636 5.87770 6.08075 6.21106 6.33718 6.63401 7.10141 7.16152 7.59997 8.15667 8.73250 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016307 B = 0.002286 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.629868 B =12245.015980 C =13190.481958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.096 4.096 4 C -0.111 4.111 5 H 0.105 0.895 6 C -0.140 4.140 7 C 0.517 3.483 8 O -0.582 6.582 9 N -0.607 5.607 10 C 0.106 3.894 11 C -0.120 4.120 12 C -0.118 4.118 13 C 0.075 3.925 14 H 0.046 0.954 15 N -0.525 5.525 16 C 0.020 3.980 17 C 0.056 3.944 18 C 0.444 3.556 19 O -0.611 6.611 20 N -0.577 5.577 21 C -0.327 4.327 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.273 1.273 28 H -0.272 1.272 29 C 0.117 3.883 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.058 0.942 48 H 0.030 0.970 49 H 0.110 0.890 50 H 0.063 0.937 51 H 0.395 0.605 52 H 0.276 0.724 53 H 0.103 0.897 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.974 4.615 -13.603 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.134 4.134 4 C -0.132 4.132 5 H 0.123 0.877 6 C -0.198 4.198 7 C 0.307 3.693 8 O -0.462 6.462 9 N -0.339 5.339 10 C -0.016 4.016 11 C -0.159 4.159 12 C -0.155 4.155 13 C -0.034 4.034 14 H 0.064 0.936 15 N -0.250 5.250 16 C -0.127 4.127 17 C -0.075 4.075 18 C 0.232 3.768 19 O -0.497 6.497 20 N -0.214 5.214 21 C -0.457 4.457 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.198 1.198 28 H -0.197 1.197 29 C -0.006 4.006 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.106 0.894 47 H 0.076 0.924 48 H 0.048 0.952 49 H 0.128 0.872 50 H 0.081 0.919 51 H 0.228 0.772 52 H 0.086 0.914 53 H 0.121 0.879 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.561 4.738 -14.512 22.524 hybrid contribution 0.071 -0.183 1.440 1.454 sum -16.490 4.555 -13.072 21.530 Atomic orbital electron populations 1.21773 0.95576 1.02083 1.01676 1.21573 0.96181 0.95210 1.02979 1.21403 0.92046 0.97916 1.02029 1.21438 0.97848 0.91870 1.02014 0.87689 1.21802 1.01359 1.02233 0.94400 1.21193 0.80083 0.92224 0.75776 1.90648 1.57446 1.47648 1.50430 1.48197 1.16656 1.07820 1.61275 1.21793 1.00238 0.82639 0.96938 1.21907 0.98845 0.99953 0.95189 1.21677 0.98670 0.92554 1.02628 1.21983 0.92866 0.92252 0.96282 0.93604 1.61533 1.39560 1.04070 1.19800 1.22527 0.98205 0.89991 1.02013 1.21778 0.95176 1.00431 0.90163 1.20710 0.87270 0.86331 0.82524 1.90466 1.66457 1.47949 1.44792 1.41950 1.29203 1.39878 1.10394 1.19672 1.08345 1.20988 0.96687 0.90228 1.26011 1.01593 0.99154 0.94674 1.69676 1.42919 1.40729 1.02997 0.84897 0.77558 0.77890 0.78166 1.19716 1.19804 1.19749 1.21859 0.94488 0.89713 0.94504 0.91821 0.93176 0.92827 0.90578 0.91414 0.92190 0.93039 0.89111 0.92590 0.91916 0.90444 0.90081 0.91907 0.88576 0.91143 0.91048 0.89401 0.92357 0.95152 0.87180 0.91866 0.77150 0.91426 0.87912 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.50 5.69 30.59 0.17 -1.33 16 3 C -0.10 -1.59 4.14 30.59 0.13 -1.46 16 4 C -0.11 -1.80 1.86 -11.54 -0.02 -1.83 16 5 H 0.11 1.46 6.40 -2.38 -0.02 1.44 16 6 C -0.14 -1.88 8.61 71.98 0.62 -1.26 16 7 C 0.52 11.58 6.78 87.66 0.59 12.18 16 8 O -0.58 -17.20 15.65 -3.02 -0.05 -17.25 16 9 N -0.61 -12.11 2.97 -818.09 -2.43 -14.54 16 10 C 0.11 1.99 6.45 86.50 0.56 2.54 16 11 C -0.12 -2.01 6.10 30.82 0.19 -1.82 16 12 C -0.12 -2.36 5.00 30.62 0.15 -2.20 16 13 C 0.08 1.62 2.09 44.99 0.09 1.72 16 14 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 15 N -0.52 -15.11 4.37 -901.16 -3.94 -19.05 16 16 C 0.02 0.56 8.75 127.69 1.12 1.68 16 17 C 0.06 1.81 5.27 85.56 0.45 2.26 16 18 C 0.44 20.27 7.47 87.66 0.66 20.92 16 19 O -0.61 -32.16 13.91 -3.07 -0.04 -32.21 16 20 N -0.58 -28.83 5.29 -306.99 -1.62 -30.45 16 21 C -0.33 -18.20 9.68 84.04 0.81 -17.39 16 22 H 0.08 4.73 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 24 N -0.92 -49.17 13.05 21.66 0.28 -48.89 16 25 Si 0.99 42.40 29.55 68.60 2.03 44.43 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 29 C 0.12 2.19 4.63 86.36 0.40 2.59 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.79 6.68 -2.39 -0.02 0.78 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 1.15 8.03 -2.38 -0.02 1.13 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 0.88 6.82 -2.39 -0.02 0.86 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.83 7.59 -2.38 -0.02 0.81 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.71 7.04 -2.39 -0.02 1.70 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.45 6.14 -2.39 -0.01 1.44 16 45 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.09 1.92 6.37 -2.39 -0.02 1.90 16 47 H 0.06 2.14 5.82 -2.39 -0.01 2.12 16 48 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 49 H 0.11 3.21 5.81 -2.38 -0.01 3.20 16 50 H 0.06 1.88 8.12 -2.39 -0.02 1.86 16 51 H 0.39 18.84 7.90 -92.71 -0.73 18.11 16 52 H 0.28 13.80 8.31 -92.70 -0.77 13.03 16 53 H 0.10 1.62 3.75 -2.39 -0.01 1.61 16 54 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -68.75 411.83 1.50 -67.26 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.16 Total: 35.55 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 7.10 Total: 15.14 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -7.70 Total: -112.92 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -0.09 Total: -49.45 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -68.75 1.50 -67.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317370201.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.205 kcal (2) G-P(sol) polarization free energy of solvation -68.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds