Wall clock time and date at job start Tue Mar 31 2020 22:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47292 * 2 1 4 4 C 1.52997 * 109.47444 * 120.00291 * 2 1 3 5 5 C 1.50705 * 109.47258 * 240.00354 * 2 1 3 6 6 O 1.21287 * 119.99479 * 359.97438 * 5 2 1 7 7 N 1.34771 * 120.00404 * 179.97438 * 5 2 1 8 8 C 1.46500 * 120.00325 * 179.97438 * 7 5 2 9 9 C 1.50694 * 109.47319 * 180.02562 * 8 7 5 10 10 O 1.21287 * 120.00193 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00108 * 180.02562 * 9 8 7 12 12 C 1.46495 * 119.99823 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46998 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47406 * 179.97438 * 13 12 11 15 15 C 1.52994 * 109.47065 * 174.94419 * 14 13 12 16 16 H 1.09002 * 109.87863 * 306.25789 * 15 14 13 17 17 C 1.54329 * 109.88271 * 67.43333 * 15 14 13 18 18 C 1.55154 * 102.94199 * 141.60594 * 17 15 14 19 19 C 1.54910 * 101.58482 * 324.49703 * 18 17 15 20 20 N 1.47024 * 109.88193 * 185.24056 * 15 14 13 21 21 C 1.36933 * 125.65110 * 61.60778 * 20 15 14 22 22 H 1.08006 * 119.99766 * 14.67976 * 21 20 15 23 23 C 1.38812 * 120.00467 * 194.68078 * 21 20 15 24 24 N 1.31618 * 119.99953 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00067 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47007 * 90.00093 * 25 23 21 27 27 H 1.48503 * 109.47075 * 209.99927 * 25 23 21 28 28 H 1.48498 * 109.47330 * 329.99749 * 25 23 21 29 29 H 1.08998 * 109.47625 * 59.99719 * 1 2 3 30 30 H 1.09002 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46989 * 299.99410 * 1 2 3 32 32 H 1.09003 * 109.46994 * 60.00127 * 3 2 1 33 33 H 1.08997 * 109.47653 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47015 * 300.00655 * 3 2 1 35 35 H 1.08997 * 109.47372 * 60.00114 * 4 2 1 36 36 H 1.08999 * 109.47471 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.47272 * 300.00126 * 4 2 1 38 38 H 0.97007 * 120.00002 * 0.02562 * 7 5 2 39 39 H 1.09002 * 109.46967 * 300.00548 * 8 7 5 40 40 H 1.08998 * 109.46739 * 60.00104 * 8 7 5 41 41 H 0.96998 * 119.99871 * 0.02562 * 11 9 8 42 42 H 1.09002 * 109.47383 * 299.99636 * 12 11 9 43 43 H 1.09003 * 109.47601 * 60.00445 * 12 11 9 44 44 H 1.09002 * 109.46714 * 299.99993 * 13 12 11 45 45 H 1.08998 * 109.47029 * 59.99572 * 13 12 11 46 46 H 1.08995 * 109.46715 * 294.95329 * 14 13 12 47 47 H 1.09006 * 109.46538 * 54.94791 * 14 13 12 48 48 H 1.08991 * 110.71949 * 259.97404 * 17 15 14 49 49 H 1.09002 * 110.71599 * 23.24600 * 17 15 14 50 50 H 1.09003 * 111.00407 * 206.42889 * 18 17 15 51 51 H 1.08995 * 111.03715 * 82.58902 * 18 17 15 52 52 H 1.08992 * 110.37160 * 278.17548 * 19 18 17 53 53 H 1.09002 * 110.36557 * 155.84618 * 19 18 17 54 54 H 0.96993 * 120.00636 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0323 -0.7104 -1.2305 6 8 1.2441 -1.1716 -2.0287 7 7 3.3573 -0.8330 -1.4441 8 6 3.8457 -1.5241 -2.6401 9 6 5.3526 -1.5240 -2.6402 10 8 5.9591 -0.9988 -1.7305 11 7 6.0265 -2.1075 -3.6511 12 6 7.4914 -2.1078 -3.6508 13 6 8.0015 -2.8283 -4.9005 14 6 9.5315 -2.8282 -4.9007 15 6 10.0414 -3.6560 -6.0820 16 1 9.5935 -4.6494 -6.0592 17 6 9.6911 -2.9490 -7.4084 18 6 10.9471 -3.2069 -8.2819 19 6 12.0790 -3.1418 -7.2263 20 7 11.5062 -3.7664 -6.0199 21 6 12.2203 -4.3517 -5.0087 22 1 11.7200 -4.9845 -4.2904 23 6 13.5871 -4.1319 -4.9066 24 7 14.1966 -3.3604 -5.7815 25 14 14.5612 -4.9310 -3.5275 26 1 15.0592 -6.2559 -3.9766 27 1 15.7129 -4.0648 -3.1687 28 1 13.6859 -5.1073 -2.3409 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6768 -1.7489 1.2491 36 1 3.1300 -0.7217 1.2489 37 1 1.6767 -0.2076 2.1392 38 1 3.9877 -0.4644 -0.8056 39 1 3.4827 -2.5519 -2.6395 40 1 3.4819 -1.0108 -3.5302 41 1 5.5415 -2.5271 -4.3787 42 1 7.8551 -1.0803 -3.6505 43 1 7.8546 -2.6221 -2.7610 44 1 7.6378 -3.8559 -4.9013 45 1 7.6383 -2.3138 -5.7902 46 1 9.8947 -1.8045 -4.9905 47 1 9.8949 -3.2622 -3.9691 48 1 8.8071 -3.3968 -7.8622 49 1 9.5450 -1.8807 -7.2490 50 1 11.0679 -2.4260 -9.0328 51 1 10.9040 -4.1911 -8.7483 52 1 12.3504 -2.1057 -7.0244 53 1 12.9488 -3.7032 -7.5675 54 1 15.1517 -3.2070 -5.7105 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317433956.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:06 Heat of formation + Delta-G solvation = -102.066454 kcal Electronic energy + Delta-G solvation = -29162.352836 eV Core-core repulsion = 25132.683306 eV Total energy + Delta-G solvation = -4029.669530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.51459 -40.54686 -39.45972 -36.84448 -36.63843 -35.53925 -34.70489 -33.70426 -31.26457 -30.27404 -28.70492 -28.25053 -27.86472 -26.59531 -25.47629 -23.67807 -22.70065 -21.86331 -21.71515 -20.81916 -20.52208 -18.72912 -18.33294 -17.67857 -17.20831 -17.16940 -16.90455 -16.56570 -16.34290 -16.02311 -15.72960 -15.60280 -15.21168 -14.74729 -14.68754 -14.40221 -14.22079 -13.97404 -13.69419 -13.60498 -13.52287 -13.32850 -13.10904 -13.06148 -13.00030 -12.90075 -12.74744 -12.64029 -12.63774 -12.24489 -12.00746 -11.92094 -11.87961 -11.82780 -11.67974 -11.54687 -11.31631 -11.19865 -11.07275 -10.80978 -10.64486 -10.32557 -10.13738 -8.76858 -7.85093 -5.20635 1.42303 1.44207 1.45340 1.53876 1.55698 1.73143 2.39191 2.50042 3.33363 3.51492 3.62954 3.72030 3.82496 3.90494 3.95858 4.01948 4.17212 4.21959 4.25350 4.30262 4.35780 4.36351 4.44322 4.63741 4.69947 4.70099 4.78734 4.81326 4.83202 4.86311 4.92951 4.94312 4.99528 5.00160 5.05247 5.14278 5.17377 5.24162 5.25150 5.30477 5.32157 5.35977 5.38101 5.51237 5.53481 5.68615 5.72131 5.80557 6.28331 6.39189 6.42429 7.07983 7.11298 7.13406 7.83390 8.50624 9.26483 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018453 B = 0.001682 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.029006 B =16638.888848 C =17685.533103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.084 4.084 3 C -0.140 4.140 4 C -0.141 4.141 5 C 0.522 3.478 6 O -0.577 6.577 7 N -0.716 5.716 8 C 0.102 3.898 9 C 0.508 3.492 10 O -0.578 6.578 11 N -0.707 5.707 12 C 0.125 3.875 13 C -0.109 4.109 14 C -0.113 4.113 15 C 0.151 3.849 16 H 0.036 0.964 17 C -0.111 4.111 18 C -0.138 4.138 19 C 0.174 3.826 20 N -0.619 5.619 21 C -0.230 4.230 22 H 0.076 0.924 23 C -0.067 4.067 24 N -0.950 5.950 25 Si 0.970 3.030 26 H -0.286 1.286 27 H -0.297 1.297 28 H -0.270 1.270 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.414 0.586 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.421 0.579 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.042 0.958 47 H 0.036 0.964 48 H 0.097 0.903 49 H 0.071 0.929 50 H 0.080 0.920 51 H 0.063 0.937 52 H -0.009 1.009 53 H 0.028 0.972 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.868 6.849 7.181 29.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.087 4.087 3 C -0.198 4.198 4 C -0.198 4.198 5 C 0.310 3.690 6 O -0.456 6.456 7 N -0.370 5.370 8 C -0.025 4.025 9 C 0.295 3.705 10 O -0.458 6.458 11 N -0.360 5.360 12 C 0.001 3.999 13 C -0.147 4.147 14 C -0.153 4.153 15 C 0.045 3.955 16 H 0.054 0.946 17 C -0.149 4.149 18 C -0.177 4.177 19 C 0.049 3.951 20 N -0.344 5.344 21 C -0.359 4.359 22 H 0.094 0.906 23 C -0.260 4.260 24 N -0.598 5.598 25 Si 0.799 3.201 26 H -0.213 1.213 27 H -0.223 1.223 28 H -0.195 1.195 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.253 0.747 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.258 0.742 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.109 0.891 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.115 0.885 49 H 0.090 0.910 50 H 0.098 0.902 51 H 0.082 0.918 52 H 0.009 0.991 53 H 0.047 0.953 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -27.754 6.860 7.305 29.507 hybrid contribution 1.585 -0.422 0.593 1.744 sum -26.168 6.438 7.898 28.082 Atomic orbital electron populations 1.21665 0.91637 1.02316 1.02698 1.20872 0.98185 0.97106 0.92537 1.21897 1.01527 0.92651 1.03701 1.21897 1.01521 1.00349 0.96034 1.21145 0.81303 0.78761 0.87816 1.90681 1.56108 1.50308 1.48487 1.45806 1.07640 1.58415 1.25175 1.21127 0.89379 1.01044 0.90930 1.20807 0.90352 0.77594 0.81790 1.90707 1.70812 1.46876 1.37362 1.45796 1.07363 1.57646 1.25164 1.21289 0.78966 1.00632 0.98969 1.21642 0.94386 1.01603 0.97100 1.21821 0.94767 0.99569 0.99131 1.21234 0.83588 0.96199 0.94464 0.94647 1.22586 0.97738 1.00496 0.94032 1.22885 0.96053 1.01370 0.97347 1.21202 0.94117 0.94129 0.85627 1.44861 1.01588 1.67082 1.20840 1.19290 0.90679 1.21132 1.04829 0.90607 1.25675 0.98356 1.00732 1.01210 1.70147 1.08783 1.42769 1.38150 0.85196 0.78157 0.77270 0.79471 1.21318 1.22327 1.19491 0.93013 0.93057 0.89641 0.89251 0.91853 0.92543 0.92603 0.91868 0.89239 0.74739 0.87047 0.86897 0.74152 0.92546 0.93002 0.90025 0.89084 0.93956 0.94469 0.88486 0.91018 0.90165 0.91835 0.99082 0.95343 0.94549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 7.76 71.98 0.56 -1.01 16 2 C -0.08 -1.06 0.87 -52.93 -0.05 -1.11 16 3 C -0.14 -1.36 8.37 71.98 0.60 -0.76 16 4 C -0.14 -1.39 8.37 71.98 0.60 -0.79 16 5 C 0.52 9.63 6.48 87.66 0.57 10.20 16 6 O -0.58 -14.47 15.98 -3.05 -0.05 -14.52 16 7 N -0.72 -11.95 5.31 -466.79 -2.48 -14.43 16 8 C 0.10 1.52 6.15 85.63 0.53 2.05 16 9 C 0.51 9.82 7.90 87.65 0.69 10.51 16 10 O -0.58 -15.82 15.67 -3.05 -0.05 -15.86 16 11 N -0.71 -11.48 5.56 -463.06 -2.57 -14.06 16 12 C 0.13 2.78 5.67 86.38 0.49 3.27 16 13 C -0.11 -2.32 5.10 30.60 0.16 -2.17 16 14 C -0.11 -3.74 4.72 30.59 0.14 -3.60 16 15 C 0.15 5.63 3.16 45.34 0.14 5.77 16 16 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 17 C -0.11 -3.28 5.71 31.78 0.18 -3.10 16 18 C -0.14 -4.85 7.08 31.99 0.23 -4.62 16 19 C 0.17 8.57 5.41 86.85 0.47 9.04 16 20 N -0.62 -31.03 3.13 -668.24 -2.09 -33.12 16 21 C -0.23 -12.77 9.71 84.03 0.82 -11.95 16 22 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.07 -3.82 5.47 84.86 0.46 -3.36 16 24 N -0.95 -57.77 10.58 21.65 0.23 -57.55 16 25 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 26 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 27 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 28 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 29 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 30 H 0.05 0.75 8.10 -2.39 -0.02 0.73 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.62 7.56 -2.39 -0.02 0.60 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 0.63 7.56 -2.39 -0.02 0.61 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.41 6.82 6.27 -92.70 -0.58 6.24 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.42 3.92 8.47 -92.71 -0.79 3.13 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.09 1.55 7.64 -2.39 -0.02 1.53 16 46 H 0.04 1.53 8.02 -2.39 -0.02 1.51 16 47 H 0.04 1.42 7.84 -2.38 -0.02 1.41 16 48 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.07 2.00 7.76 -2.39 -0.02 1.99 16 50 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 51 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 52 H -0.01 -0.48 8.06 -2.39 -0.02 -0.50 16 53 H 0.03 1.59 6.93 -2.39 -0.02 1.57 16 54 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -76.44 427.49 1.12 -75.32 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -0.50 Total: 17.49 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 6.60 Total: 8.38 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -6.91 Total: -119.15 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.10 Total: -30.38 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -76.44 1.12 -75.32 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317433956.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.747 kcal (2) G-P(sol) polarization free energy of solvation -76.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds