Wall clock time and date at job start Tue Mar 31 2020 22:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47068 * 2 1 4 4 C 1.53000 * 109.46992 * 184.72948 * 3 2 1 5 5 H 1.09003 * 109.47570 * 305.88225 * 4 3 2 6 6 C 1.52994 * 109.47056 * 185.87819 * 4 3 2 7 7 C 1.52997 * 109.47605 * 66.01198 * 6 4 3 8 8 C 1.50703 * 109.47067 * 65.87978 * 4 3 2 9 9 O 1.21285 * 119.99588 * 359.97438 * 8 4 3 10 10 N 1.34769 * 120.00230 * 179.97438 * 8 4 3 11 11 C 1.46504 * 120.00000 * 359.97438 * 10 8 4 12 12 C 1.46503 * 120.00244 * 179.97438 * 10 8 4 13 13 H 1.08999 * 110.64155 * 358.30463 * 12 10 8 14 14 C 1.54601 * 110.72154 * 121.45280 * 12 10 8 15 15 C 1.53990 * 105.14074 * 140.49616 * 14 12 10 16 16 N 1.47908 * 107.22585 * 1.12532 * 15 14 12 17 17 C 1.46902 * 111.00282 * 214.25510 * 16 15 14 18 18 C 1.50700 * 109.46749 * 176.81162 * 17 16 15 19 19 O 1.21291 * 120.00411 * 6.35792 * 18 17 16 20 20 N 1.34784 * 119.99549 * 186.35619 * 18 17 16 21 21 C 1.37094 * 119.99907 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00173 * 0.02562 * 21 20 18 23 23 C 1.38945 * 119.99832 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99846 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00231 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.46896 * 89.99709 * 25 23 21 27 27 H 1.48505 * 109.47063 * 209.99849 * 25 23 21 28 28 H 1.48500 * 109.46980 * 329.99694 * 25 23 21 29 29 C 1.48809 * 105.67882 * 334.90821 * 16 15 14 30 30 H 1.08997 * 109.47112 * 59.99967 * 1 2 3 31 31 H 1.09000 * 109.46830 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47008 * 299.99662 * 1 2 3 33 33 H 1.08997 * 109.47033 * 239.99862 * 2 1 3 34 34 H 1.08999 * 109.47326 * 120.00528 * 2 1 3 35 35 H 1.09003 * 109.46751 * 64.73157 * 3 2 1 36 36 H 1.08998 * 109.47348 * 304.72983 * 3 2 1 37 37 H 1.09009 * 109.47413 * 186.01353 * 6 4 3 38 38 H 1.09001 * 109.47384 * 306.00684 * 6 4 3 39 39 H 1.08993 * 109.47658 * 183.81560 * 7 6 4 40 40 H 1.09002 * 109.47081 * 303.81922 * 7 6 4 41 41 H 1.09006 * 109.47098 * 63.81157 * 7 6 4 42 42 H 1.08998 * 109.46904 * 270.00291 * 11 10 8 43 43 H 1.08996 * 109.47118 * 30.00311 * 11 10 8 44 44 H 1.09004 * 109.47079 * 150.00215 * 11 10 8 45 45 H 1.09002 * 110.30786 * 21.58092 * 14 12 10 46 46 H 1.08996 * 110.39511 * 259.45797 * 14 12 10 47 47 H 1.08998 * 109.91992 * 120.57452 * 15 14 12 48 48 H 1.09003 * 109.92043 * 241.67806 * 15 14 12 49 49 H 1.08997 * 109.46773 * 296.81213 * 17 16 15 50 50 H 1.08997 * 109.46848 * 56.80850 * 17 16 15 51 51 H 0.96999 * 119.99740 * 359.97438 * 20 18 17 52 52 H 0.97002 * 119.99664 * 180.02562 * 24 23 21 53 53 H 1.09001 * 110.51974 * 280.54480 * 29 16 15 54 54 H 1.08995 * 110.84800 * 157.55793 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5654 1.4441 -0.1189 5 1 3.9918 0.8195 0.6661 6 6 4.0869 2.8749 0.0281 7 6 3.8131 3.3742 1.4481 8 6 3.9648 0.8999 -1.4663 9 8 3.1132 0.5452 -2.2537 10 7 5.2682 0.8073 -1.7963 11 6 6.2968 1.2363 -0.8455 12 6 5.6564 0.2777 -3.1060 13 1 4.7766 -0.0210 -3.6758 14 6 6.4899 1.3166 -3.8909 15 6 7.5907 0.5009 -4.5939 16 7 7.3715 -0.9203 -4.2474 17 6 8.6487 -1.6365 -4.1297 18 6 8.3899 -3.0576 -3.7003 19 8 7.2519 -3.4700 -3.6226 20 7 9.4231 -3.8704 -3.4027 21 6 9.1876 -5.1631 -3.0116 22 1 8.1743 -5.5304 -2.9423 23 6 10.2527 -6.0012 -2.7053 24 7 10.0271 -7.2405 -2.3308 25 14 12.0054 -5.3663 -2.8257 26 1 12.4116 -4.7837 -1.5216 27 1 12.9154 -6.4876 -3.1719 28 1 12.0826 -4.3228 -3.8796 29 6 6.6393 -0.9101 -2.9520 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.7475 1.9312 0.9294 36 1 1.6092 1.9802 -0.8446 37 1 5.1601 2.8920 -0.1624 38 1 3.5805 3.5216 -0.6885 39 1 4.1229 4.4157 1.5332 40 1 2.7474 3.2935 1.6625 41 1 4.3738 2.7690 2.1605 42 1 6.5197 2.2916 -1.0029 43 1 5.9350 1.0892 0.1721 44 1 7.2012 0.6472 -0.9982 45 1 6.9337 2.0402 -3.2071 46 1 5.8674 1.8251 -4.6270 47 1 7.5202 0.6350 -5.6733 48 1 8.5717 0.8214 -4.2433 49 1 9.1563 -1.6350 -5.0943 50 1 9.2759 -1.1414 -3.3884 51 1 10.3331 -3.5407 -3.4653 52 1 10.7707 -7.8254 -2.1166 53 1 7.3278 -0.7350 -2.1253 54 1 6.0951 -1.8432 -2.8067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318443399.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:51 Heat of formation + Delta-G solvation = -90.668646 kcal Electronic energy + Delta-G solvation = -30910.024501 eV Core-core repulsion = 26880.849217 eV Total energy + Delta-G solvation = -4029.175284 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.66768 -40.62358 -39.24468 -37.02968 -36.54158 -35.94569 -34.15983 -33.77877 -32.45519 -29.98200 -29.47787 -28.54462 -27.73784 -26.27477 -25.60335 -23.12107 -22.41381 -22.13221 -21.39491 -21.24955 -20.22562 -19.93508 -18.58322 -17.75446 -17.57904 -16.80247 -16.62357 -16.32345 -16.16923 -15.88209 -15.63823 -15.48989 -15.00900 -14.94011 -14.66495 -14.54797 -14.35364 -14.16827 -14.05519 -13.86795 -13.81824 -13.36293 -13.22571 -13.10051 -12.98548 -12.90361 -12.86510 -12.60060 -12.47268 -12.43452 -12.25064 -12.12222 -12.05597 -11.98484 -11.64955 -11.61148 -11.55083 -11.49201 -11.20950 -10.55686 -10.38741 -10.25956 -9.64155 -9.33768 -8.42355 -6.03771 1.29410 1.34792 1.44361 1.59986 1.89769 1.93653 2.22397 2.68097 3.13515 3.24232 3.42820 3.61761 3.70994 3.78545 3.89890 4.03302 4.09805 4.15842 4.18159 4.25962 4.31697 4.34159 4.35755 4.38515 4.49567 4.52190 4.59465 4.62520 4.68968 4.71246 4.80228 4.86416 4.87938 4.92153 4.95509 4.99740 5.08425 5.10793 5.16956 5.20136 5.22295 5.31567 5.40877 5.44651 5.51180 5.51919 5.53473 5.83683 5.91313 6.04657 6.38399 6.58504 6.87152 7.17798 7.37891 7.96034 8.75552 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013450 B = 0.002512 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.221812 B =11144.921768 C =11802.246436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C -0.094 4.094 4 C -0.101 4.101 5 H 0.108 0.892 6 C -0.122 4.122 7 C -0.150 4.150 8 C 0.509 3.491 9 O -0.579 6.579 10 N -0.606 5.606 11 C 0.063 3.937 12 C 0.139 3.861 13 H 0.075 0.925 14 C -0.125 4.125 15 C 0.038 3.962 16 N -0.521 5.521 17 C 0.049 3.951 18 C 0.447 3.553 19 O -0.609 6.609 20 N -0.590 5.590 21 C -0.328 4.328 22 H 0.051 0.949 23 C -0.016 4.016 24 N -0.936 5.936 25 Si 0.967 3.033 26 H -0.255 1.255 27 H -0.276 1.276 28 H -0.230 1.230 29 C 0.040 3.960 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.123 0.877 50 H 0.086 0.914 51 H 0.390 0.610 52 H 0.279 0.721 53 H 0.055 0.945 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.560 29.166 6.775 30.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C -0.131 4.131 4 C -0.122 4.122 5 H 0.126 0.874 6 C -0.159 4.159 7 C -0.207 4.207 8 C 0.299 3.701 9 O -0.459 6.459 10 N -0.338 5.338 11 C -0.078 4.078 12 C 0.034 3.966 13 H 0.093 0.907 14 C -0.163 4.163 15 C -0.089 4.089 16 N -0.247 5.247 17 C -0.082 4.082 18 C 0.235 3.765 19 O -0.493 6.493 20 N -0.232 5.232 21 C -0.457 4.457 22 H 0.069 0.931 23 C -0.215 4.215 24 N -0.577 5.577 25 Si 0.786 3.214 26 H -0.179 1.179 27 H -0.201 1.201 28 H -0.153 1.153 29 C -0.089 4.089 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.090 0.910 45 H 0.117 0.883 46 H 0.099 0.901 47 H 0.109 0.891 48 H 0.092 0.908 49 H 0.141 0.859 50 H 0.104 0.896 51 H 0.226 0.774 52 H 0.089 0.911 53 H 0.073 0.927 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.979 28.244 6.070 29.315 hybrid contribution 1.087 -0.809 0.329 1.395 sum -3.892 27.435 6.399 28.438 Atomic orbital electron populations 1.21694 0.95168 1.01479 1.01901 1.21655 0.96826 0.97598 1.01247 1.21461 0.92371 0.96638 1.02655 1.21470 0.98334 0.99509 0.92875 0.87384 1.21768 1.02810 0.92118 0.99223 1.21814 1.02317 1.01671 0.94898 1.21455 0.81613 0.77058 0.90021 1.90660 1.50743 1.50713 1.53742 1.47887 1.06610 1.62927 1.16328 1.22268 0.91312 1.01313 0.92931 1.21737 0.97380 0.93091 0.84373 0.90667 1.22676 0.96811 0.97280 0.99553 1.22984 0.98727 0.85251 1.01915 1.64417 1.18143 1.13148 1.28972 1.22073 0.92186 0.89992 1.03988 1.20935 0.84754 0.89062 0.81772 1.90555 1.23775 1.77638 1.57376 1.42016 1.08060 1.10892 1.62233 1.18969 0.94980 0.87610 1.44183 0.93067 1.26160 1.04415 0.95063 0.95844 1.69818 1.34581 1.07437 1.45814 0.85341 0.76039 0.79445 0.80532 1.17884 1.20094 1.15285 1.23386 0.96369 0.98165 0.90943 0.93503 0.93278 0.91197 0.93883 0.92028 0.88725 0.92836 0.89095 0.92209 0.91462 0.92262 0.91765 0.89157 0.89058 0.90991 0.88336 0.90120 0.89140 0.90752 0.85878 0.89594 0.77409 0.91126 0.92691 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.91 71.98 0.71 -2.13 16 2 C -0.14 -3.06 5.73 30.60 0.18 -2.88 16 3 C -0.09 -1.71 4.22 30.59 0.13 -1.58 16 4 C -0.10 -1.72 1.37 -11.54 -0.02 -1.73 16 5 H 0.11 1.61 7.40 -2.39 -0.02 1.59 16 6 C -0.12 -1.34 5.04 30.59 0.15 -1.19 16 7 C -0.15 -1.15 9.77 71.98 0.70 -0.45 16 8 C 0.51 13.04 6.76 87.66 0.59 13.64 16 9 O -0.58 -20.25 13.41 -3.04 -0.04 -20.29 16 10 N -0.61 -13.62 2.89 -815.84 -2.36 -15.98 16 11 C 0.06 0.85 7.71 127.77 0.99 1.83 16 12 C 0.14 3.81 3.46 46.20 0.16 3.97 16 13 H 0.08 2.65 6.99 -2.39 -0.02 2.64 16 14 C -0.12 -2.35 6.55 31.47 0.21 -2.14 16 15 C 0.04 0.77 6.69 86.44 0.58 1.35 16 16 N -0.52 -16.16 5.11 -886.80 -4.53 -20.69 16 17 C 0.05 1.49 5.31 85.56 0.45 1.95 16 18 C 0.45 20.47 7.42 87.66 0.65 21.12 16 19 O -0.61 -34.84 13.92 -3.06 -0.04 -34.88 16 20 N -0.59 -27.89 5.09 -306.98 -1.56 -29.45 16 21 C -0.33 -19.42 10.16 84.04 0.85 -18.56 16 22 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 23 C -0.02 -0.91 5.50 84.92 0.47 -0.45 16 24 N -0.94 -56.88 13.96 21.66 0.30 -56.58 16 25 Si 0.97 38.39 27.74 68.60 1.90 40.29 16 26 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 27 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 28 H -0.23 -7.59 6.52 99.48 0.65 -6.95 16 29 C 0.04 1.32 5.14 86.59 0.45 1.76 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.04 1.31 5.96 -2.39 -0.01 1.30 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.22 6.28 -2.39 -0.01 1.21 16 36 H 0.05 1.15 7.92 -2.39 -0.02 1.13 16 37 H 0.09 0.77 4.44 -2.38 -0.01 0.75 16 38 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.06 0.47 6.32 -2.39 -0.02 0.46 16 41 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 42 H 0.09 0.70 6.61 -2.39 -0.02 0.69 16 43 H 0.09 0.96 6.07 -2.39 -0.01 0.95 16 44 H 0.07 1.04 6.08 -2.39 -0.01 1.02 16 45 H 0.10 1.32 6.99 -2.39 -0.02 1.30 16 46 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.07 1.09 7.68 -2.39 -0.02 1.07 16 49 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 50 H 0.09 2.02 7.99 -2.39 -0.02 2.00 16 51 H 0.39 15.03 5.76 -92.71 -0.53 14.49 16 52 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 53 H 0.06 1.62 5.96 -2.39 -0.01 1.60 16 54 H 0.05 2.24 6.49 -2.39 -0.02 2.23 16 Total: -1.00 -85.57 405.65 1.23 -84.34 By element: Atomic # 1 Polarization: 38.45 SS G_CDS: 0.31 Total: 38.75 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 7.25 Total: 14.50 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -8.15 Total: -122.71 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -0.08 Total: -55.18 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 1.90 Total: 40.29 kcal Total: -85.57 1.23 -84.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318443399.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.333 kcal (2) G-P(sol) polarization free energy of solvation -85.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds