Wall clock time and date at job start Tue Mar 31 2020 22:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46964 * 2 1 4 4 C 1.52992 * 109.47351 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46907 * 304.99956 * 4 3 2 6 6 C 1.53001 * 109.47559 * 64.99483 * 4 3 2 7 7 C 1.52996 * 109.47645 * 184.83138 * 6 4 3 8 8 C 1.50696 * 109.47316 * 184.99915 * 4 3 2 9 9 O 1.21280 * 119.99863 * 274.43987 * 8 4 3 10 10 N 1.34783 * 120.00136 * 94.44696 * 8 4 3 11 11 C 1.46500 * 119.99590 * 354.92359 * 10 8 4 12 12 C 1.46494 * 119.99897 * 174.93227 * 10 8 4 13 13 H 1.09002 * 110.87998 * 2.38408 * 12 10 8 14 14 C 1.55148 * 110.99098 * 238.54239 * 12 10 8 15 15 C 1.54314 * 103.02062 * 206.21997 * 14 12 10 16 16 N 1.47442 * 107.23552 * 22.28019 * 15 14 12 17 17 C 1.46895 * 111.00157 * 123.25717 * 16 15 14 18 18 C 1.50708 * 109.46883 * 69.87418 * 17 16 15 19 19 O 1.21288 * 119.99900 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99782 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99653 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99968 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99979 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99895 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00146 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47214 * 59.99873 * 25 23 21 27 27 H 1.48511 * 109.47066 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47134 * 299.99679 * 25 23 21 29 29 C 1.47854 * 108.56586 * 0.99201 * 16 15 14 30 30 H 1.09005 * 109.47506 * 300.00038 * 1 2 3 31 31 H 1.09000 * 109.47230 * 60.00621 * 1 2 3 32 32 H 1.09005 * 109.46964 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47069 * 240.00063 * 2 1 3 34 34 H 1.09000 * 109.47230 * 119.99379 * 2 1 3 35 35 H 1.08995 * 109.47307 * 59.99214 * 3 2 1 36 36 H 1.09008 * 109.46917 * 299.99621 * 3 2 1 37 37 H 1.09001 * 109.47027 * 304.83756 * 6 4 3 38 38 H 1.09001 * 109.46724 * 64.83190 * 6 4 3 39 39 H 1.09005 * 109.47109 * 304.88677 * 7 6 4 40 40 H 1.09003 * 109.47105 * 64.88042 * 7 6 4 41 41 H 1.08995 * 109.47120 * 184.87970 * 7 6 4 42 42 H 1.08991 * 109.47446 * 275.29871 * 11 10 8 43 43 H 1.08996 * 109.47133 * 35.30869 * 11 10 8 44 44 H 1.09003 * 109.46264 * 155.30487 * 11 10 8 45 45 H 1.08995 * 110.70403 * 87.83492 * 14 12 10 46 46 H 1.09002 * 110.84966 * 324.66869 * 14 12 10 47 47 H 1.09004 * 109.88624 * 262.87487 * 15 14 12 48 48 H 1.09000 * 109.88952 * 141.68606 * 15 14 12 49 49 H 1.08995 * 109.47663 * 189.87485 * 17 16 15 50 50 H 1.09000 * 109.47524 * 309.87705 * 17 16 15 51 51 H 0.96996 * 119.99997 * 0.02562 * 20 18 17 52 52 H 0.97003 * 120.00411 * 180.02562 * 24 23 21 53 53 H 1.08995 * 110.37310 * 94.73216 * 29 16 15 54 54 H 1.09003 * 110.36955 * 217.07428 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9336 0.8531 0.8409 6 6 4.0795 0.8331 -1.3082 7 6 5.6047 0.7224 -1.2591 8 6 4.0722 2.8580 0.1232 9 8 4.1972 3.5459 -0.8678 10 7 4.3827 3.3594 1.3351 11 6 4.1275 2.5690 2.5420 12 6 4.9751 4.6946 1.4456 13 1 5.0604 5.1641 0.4655 14 6 6.3538 4.6341 2.1545 15 6 6.4886 6.0412 2.7733 16 7 5.1277 6.5932 2.9042 17 6 4.8428 6.9673 4.2958 18 6 5.6670 8.1720 4.6709 19 8 6.4174 8.6702 3.8586 20 7 5.5693 8.6964 5.9087 21 6 6.3187 9.7926 6.2497 22 1 6.9869 10.2362 5.5264 23 6 6.2185 10.3330 7.5259 24 7 5.4051 9.7935 8.4058 25 14 7.2389 11.8271 7.9904 26 1 6.8953 12.9595 7.0933 27 1 6.9506 12.2055 9.3972 28 1 8.6815 11.5043 7.8498 29 6 4.1619 5.5846 2.4183 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.6765 1.9564 0.8899 36 1 1.6766 1.9564 -0.8901 37 1 3.6472 -0.1588 -1.4394 38 1 3.7882 1.4698 -2.1436 39 1 6.0332 1.7008 -1.0414 40 1 5.8929 0.0179 -0.4789 41 1 5.9745 0.3697 -2.2218 42 1 3.0943 2.7119 2.8582 43 1 4.2997 1.5141 2.3285 44 1 4.7989 2.8932 3.3371 45 1 7.1504 4.4523 1.4331 46 1 6.3573 3.8695 2.9314 47 1 7.0858 6.6778 2.1203 48 1 6.9563 5.9712 3.7554 49 1 3.7841 7.2050 4.3988 50 1 5.0942 6.1358 4.9543 51 1 4.9689 8.2982 6.5581 52 1 5.3348 10.1709 9.2966 53 1 3.7834 4.9903 3.2499 54 1 3.3397 6.0693 1.8918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318443402.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:02 Heat of formation + Delta-G solvation = -101.838426 kcal Electronic energy + Delta-G solvation = -30343.479454 eV Core-core repulsion = 26313.819812 eV Total energy + Delta-G solvation = -4029.659642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.60806 -40.50421 -39.22997 -37.16920 -36.40011 -35.82525 -33.90642 -33.31901 -32.46931 -30.33046 -29.60290 -28.34938 -27.67773 -26.14419 -25.34449 -23.81280 -22.38653 -22.24814 -21.33882 -20.84031 -19.90815 -19.68900 -18.62517 -17.70875 -17.46841 -16.88420 -16.49269 -16.46839 -16.13822 -15.97944 -15.65732 -15.33063 -15.01555 -14.88748 -14.68932 -14.51350 -14.29085 -14.08561 -13.86689 -13.74438 -13.64492 -13.56637 -13.31583 -13.17972 -12.94379 -12.91993 -12.64340 -12.58366 -12.55242 -12.42981 -12.29527 -12.20189 -12.12022 -11.94184 -11.70916 -11.69918 -11.57011 -11.48928 -11.25958 -10.62878 -10.33415 -10.00155 -9.69329 -9.24187 -8.45962 -5.94355 1.39504 1.41300 1.51982 1.58744 1.85036 2.06509 2.29359 2.85088 3.20563 3.33606 3.41416 3.60372 3.69713 3.76691 3.93684 3.99138 4.10139 4.17139 4.22651 4.25151 4.28451 4.32923 4.40222 4.42570 4.49109 4.50769 4.53065 4.63078 4.67561 4.75841 4.76821 4.84383 4.88586 4.92457 4.93040 4.96544 5.01250 5.09500 5.14623 5.16621 5.28844 5.32352 5.34432 5.41169 5.41772 5.49477 5.52658 5.85718 5.99629 6.09540 6.37515 6.61901 7.13922 7.16495 7.57395 8.13952 8.71173 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023800 B = 0.001944 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.185849 B =14397.547159 C =15085.540530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.104 4.104 4 C -0.100 4.100 5 H 0.120 0.880 6 C -0.109 4.109 7 C -0.153 4.153 8 C 0.516 3.484 9 O -0.585 6.585 10 N -0.603 5.603 11 C 0.062 3.938 12 C 0.138 3.862 13 H 0.085 0.915 14 C -0.137 4.137 15 C 0.062 3.938 16 N -0.530 5.530 17 C 0.057 3.943 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.274 1.274 27 H -0.269 1.269 28 H -0.272 1.272 29 C 0.043 3.957 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.098 0.902 38 H 0.049 0.951 39 H 0.027 0.973 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.054 0.946 48 H 0.047 0.953 49 H 0.108 0.892 50 H 0.077 0.923 51 H 0.396 0.604 52 H 0.278 0.722 53 H 0.076 0.924 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.268 -27.031 -11.008 30.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.142 4.142 4 C -0.121 4.121 5 H 0.138 0.862 6 C -0.147 4.147 7 C -0.210 4.210 8 C 0.306 3.694 9 O -0.465 6.465 10 N -0.335 5.335 11 C -0.080 4.080 12 C 0.032 3.968 13 H 0.103 0.897 14 C -0.176 4.176 15 C -0.066 4.066 16 N -0.255 5.255 17 C -0.074 4.074 18 C 0.227 3.773 19 O -0.503 6.503 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.199 1.199 27 H -0.194 1.194 28 H -0.197 1.197 29 C -0.085 4.085 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.113 0.887 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.126 0.874 50 H 0.095 0.905 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.094 0.906 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.798 -25.837 -12.137 29.592 hybrid contribution 0.401 0.661 1.047 1.302 sum -7.397 -25.176 -11.089 28.487 Atomic orbital electron populations 1.21790 0.95777 1.02086 1.01645 1.21556 0.95859 0.94821 1.03290 1.21501 0.91464 0.98954 1.02305 1.21548 0.97742 0.90968 1.01816 0.86215 1.21507 0.96027 1.01625 0.95551 1.21791 0.95813 1.00783 1.02615 1.21372 0.75882 0.90201 0.81965 1.90677 1.55124 1.62321 1.38352 1.47861 1.61719 1.16245 1.07644 1.22185 1.02747 0.96769 0.86249 1.21905 0.92189 0.83140 0.99519 0.89714 1.23080 0.97126 0.96766 1.00601 1.22538 0.90311 0.93803 0.99987 1.63049 1.03015 1.39945 1.19513 1.21921 1.00465 0.95316 0.89736 1.20811 0.86351 0.87851 0.82296 1.90498 1.43614 1.65146 1.51046 1.41905 1.39649 1.27821 1.11815 1.19595 1.21668 1.07037 0.97908 0.90530 1.26007 0.98466 1.01767 0.95018 1.69658 1.37713 1.42521 1.06155 0.85013 0.78298 0.77650 0.77514 1.19945 1.19365 1.19731 1.23294 0.95058 0.92067 0.98064 0.92716 0.93445 0.91862 0.91083 0.90229 0.91223 0.93053 0.88388 0.93174 0.95334 0.90965 0.92138 0.90801 0.88254 0.90026 0.90275 0.88656 0.92719 0.93484 0.87379 0.90539 0.76964 0.91302 0.90588 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.12 -0.86 5.70 30.60 0.17 -0.69 16 3 C -0.10 -1.20 4.66 30.59 0.14 -1.06 16 4 C -0.10 -1.30 1.66 -11.54 -0.02 -1.31 16 5 H 0.12 0.89 5.83 -2.39 -0.01 0.87 16 6 C -0.11 -1.50 5.02 30.59 0.15 -1.35 16 7 C -0.15 -2.21 9.80 71.98 0.71 -1.50 16 8 C 0.52 11.04 5.64 87.65 0.49 11.53 16 9 O -0.59 -18.29 15.35 -3.03 -0.05 -18.34 16 10 N -0.60 -11.16 2.91 -814.88 -2.37 -13.53 16 11 C 0.06 0.61 8.86 127.77 1.13 1.74 16 12 C 0.14 3.34 3.44 46.38 0.16 3.50 16 13 H 0.08 2.63 7.02 -2.39 -0.02 2.61 16 14 C -0.14 -3.16 6.48 31.78 0.21 -2.96 16 15 C 0.06 1.99 5.65 86.65 0.49 2.48 16 16 N -0.53 -17.77 4.85 -890.09 -4.32 -22.09 16 17 C 0.06 1.96 5.03 85.56 0.43 2.39 16 18 C 0.44 21.21 7.43 87.66 0.65 21.86 16 19 O -0.62 -35.01 15.12 -3.05 -0.05 -35.06 16 20 N -0.57 -29.59 5.29 -306.98 -1.62 -31.21 16 21 C -0.33 -19.04 9.68 84.04 0.81 -18.22 16 22 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 24 N -0.92 -49.49 13.05 21.66 0.28 -49.21 16 25 Si 0.99 43.26 29.55 68.60 2.03 45.28 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 C 0.04 1.09 6.25 86.77 0.54 1.63 16 30 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.07 0.48 6.46 -2.39 -0.02 0.46 16 34 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.10 0.85 6.35 -2.39 -0.02 0.83 16 38 H 0.05 0.95 7.68 -2.39 -0.02 0.94 16 39 H 0.03 0.56 7.07 -2.38 -0.02 0.55 16 40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.10 0.49 5.88 -2.39 -0.01 0.48 16 44 H 0.08 0.78 6.34 -2.39 -0.02 0.76 16 45 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.10 1.74 6.38 -2.39 -0.02 1.72 16 47 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 48 H 0.05 1.60 7.31 -2.39 -0.02 1.58 16 49 H 0.11 3.30 8.07 -2.39 -0.02 3.28 16 50 H 0.08 2.23 7.96 -2.39 -0.02 2.21 16 51 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 52 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 53 H 0.08 1.50 6.73 -2.39 -0.02 1.48 16 54 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -75.47 418.29 1.31 -74.15 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.15 Total: 32.72 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 7.25 Total: 17.27 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -8.03 Total: -116.04 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -0.09 Total: -53.39 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -75.47 1.31 -74.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318443402.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.684 kcal (2) G-P(sol) polarization free energy of solvation -75.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds