Wall clock time and date at job start Tue Mar 31 2020 22:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47163 * 2 1 4 4 C 1.52992 * 109.46945 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47367 * 304.99820 * 4 3 2 6 6 C 1.52995 * 109.47592 * 65.00180 * 4 3 2 7 7 C 1.53012 * 109.47114 * 184.99946 * 4 3 2 8 8 C 1.50690 * 109.47040 * 174.99959 * 7 4 3 9 9 O 1.21283 * 120.00755 * 0.02562 * 8 7 4 10 10 N 1.34783 * 119.99970 * 179.97438 * 8 7 4 11 11 C 1.47430 * 125.64267 * 5.04381 * 10 8 7 12 12 C 1.54912 * 104.83080 * 155.90727 * 11 10 8 13 13 C 1.55401 * 101.66582 * 36.92003 * 12 11 10 14 14 C 1.47018 * 125.65082 * 185.08237 * 10 8 7 15 15 H 1.08994 * 109.88511 * 300.59338 * 14 10 8 16 16 C 1.52994 * 109.88287 * 61.60986 * 14 10 8 17 17 N 1.46895 * 109.47427 * 185.25661 * 16 14 10 18 18 C 1.46904 * 111.00180 * 175.08660 * 17 16 14 19 19 C 1.50708 * 109.46765 * 180.02562 * 18 17 16 20 20 O 1.21288 * 120.00145 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99405 * 180.02562 * 19 18 17 22 22 C 1.37094 * 119.99538 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00330 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99758 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00074 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99809 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46958 * 60.00376 * 26 24 22 28 28 H 1.48507 * 109.47031 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47418 * 300.00114 * 26 24 22 30 30 H 1.08995 * 109.47410 * 299.99869 * 1 2 3 31 31 H 1.09000 * 109.46801 * 60.00012 * 1 2 3 32 32 H 1.09006 * 109.47055 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47410 * 240.00131 * 2 1 3 34 34 H 1.09000 * 109.46801 * 119.99987 * 2 1 3 35 35 H 1.09004 * 109.47077 * 59.99850 * 3 2 1 36 36 H 1.09004 * 109.47026 * 300.00149 * 3 2 1 37 37 H 1.09009 * 109.47124 * 59.99697 * 6 4 3 38 38 H 1.08998 * 109.47998 * 179.97438 * 6 4 3 39 39 H 1.09001 * 109.46795 * 300.00108 * 6 4 3 40 40 H 1.08999 * 109.46570 * 55.00026 * 7 4 3 41 41 H 1.08996 * 109.47017 * 295.00390 * 7 4 3 42 42 H 1.08996 * 110.36462 * 274.74155 * 11 10 8 43 43 H 1.09000 * 110.36906 * 36.96146 * 11 10 8 44 44 H 1.08995 * 111.00809 * 155.08119 * 12 11 10 45 45 H 1.09009 * 111.00234 * 278.89810 * 12 11 10 46 46 H 1.09001 * 110.85671 * 206.30040 * 13 12 11 47 47 H 1.09006 * 110.69632 * 82.95258 * 13 12 11 48 48 H 1.09004 * 109.47426 * 65.25750 * 16 14 10 49 49 H 1.09003 * 109.46903 * 305.25683 * 16 14 10 50 50 H 1.00902 * 110.99745 * 51.13484 * 17 16 14 51 51 H 1.09000 * 109.46621 * 299.99833 * 18 17 16 52 52 H 1.08999 * 109.47308 * 60.00211 * 18 17 16 53 53 H 0.97004 * 120.00188 * 359.97438 * 21 19 18 54 54 H 0.96995 * 120.00262 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0806 0.8327 -1.3063 7 6 4.0800 2.8796 0.1264 8 6 5.5818 2.8705 0.2505 9 8 6.1850 1.8184 0.2391 10 7 6.2548 4.0318 0.3732 11 6 5.6459 5.3679 0.5055 12 6 6.7231 6.2263 1.2144 13 6 8.0308 5.6759 0.5804 14 6 7.7177 4.1760 0.3966 15 1 8.1332 3.6062 1.2277 16 6 8.3108 3.6785 -0.9231 17 7 9.7772 3.7086 -0.8432 18 6 10.3823 3.1284 -2.0495 19 6 11.8839 3.1761 -1.9310 20 8 12.3993 3.6475 -0.9394 21 7 12.6541 2.6958 -2.9274 22 6 14.0201 2.7396 -2.8198 23 1 14.4791 3.1594 -1.9369 24 6 14.8141 2.2440 -3.8468 25 7 14.2556 1.7328 -4.9209 26 14 16.6754 2.3044 -3.7006 27 1 17.1037 1.5280 -2.5093 28 1 17.2870 1.7182 -4.9203 29 1 17.1151 3.7154 -3.5562 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 3.7176 1.4221 -2.1485 38 1 5.1706 0.8330 -1.3061 39 1 3.7173 -0.1911 -1.3959 40 1 3.6450 3.3433 1.0117 41 1 3.7920 3.4461 -0.7592 42 1 5.4188 5.7803 -0.4776 43 1 4.7416 5.3144 1.1118 44 1 6.5925 7.2840 0.9861 45 1 6.7113 6.0568 2.2912 46 1 8.8766 5.8137 1.2540 47 1 8.2217 6.1507 -0.3821 48 1 7.9780 4.3229 -1.7368 49 1 7.9779 2.6573 -1.1089 50 1 10.1038 3.2378 -0.0126 51 1 10.0592 2.0928 -2.1558 52 1 10.0682 3.6986 -2.9238 53 1 12.2418 2.3191 -3.7206 54 1 14.8099 1.3872 -5.6379 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319057155.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:15 Heat of formation + Delta-G solvation = -118.974545 kcal Electronic energy + Delta-G solvation = -29633.824880 eV Core-core repulsion = 25603.422160 eV Total energy + Delta-G solvation = -4030.402720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.37536 -40.18702 -39.03510 -37.41748 -36.64319 -35.81187 -33.65240 -33.30416 -32.61553 -31.36480 -28.84318 -28.18778 -27.45237 -26.39097 -24.87252 -23.69321 -22.74619 -21.82980 -21.23179 -20.81563 -20.02556 -19.70356 -18.14624 -17.98342 -17.32561 -16.96172 -16.54781 -16.35335 -16.23751 -15.96344 -15.70951 -15.27857 -15.13595 -14.96453 -14.84503 -14.52034 -14.32377 -14.08183 -14.00963 -13.72457 -13.50339 -13.28832 -13.22617 -13.12561 -12.91961 -12.86189 -12.65707 -12.57061 -12.45409 -12.37432 -12.13177 -12.03811 -11.83512 -11.80554 -11.65987 -11.57460 -11.52417 -11.47974 -11.26603 -10.67174 -10.40615 -10.04922 -9.65780 -9.44771 -8.48463 -5.98035 1.38890 1.40530 1.52125 1.64472 1.93566 2.00729 2.28328 2.91689 3.17925 3.41788 3.54591 3.69772 3.79109 3.83381 3.89816 3.97462 4.19540 4.22437 4.25717 4.29395 4.31774 4.39088 4.42959 4.46477 4.50268 4.54755 4.66591 4.70937 4.72449 4.73007 4.80491 4.86471 4.93568 4.98144 5.04592 5.05846 5.08113 5.17561 5.18295 5.25611 5.31097 5.36028 5.38535 5.43469 5.44241 5.55330 5.58102 5.78589 6.01950 6.23465 6.56465 6.58630 7.09094 7.21253 7.51744 8.06552 8.68824 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.001942 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.456423 B =14415.735543 C =16047.351667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.106 4.106 4 C -0.074 4.074 5 H 0.055 0.945 6 C -0.152 4.152 7 C -0.122 4.122 8 C 0.516 3.484 9 O -0.580 6.580 10 N -0.616 5.616 11 C 0.096 3.904 12 C -0.126 4.126 13 C -0.113 4.113 14 C 0.139 3.861 15 H 0.052 0.948 16 C 0.061 3.939 17 N -0.666 5.666 18 C 0.066 3.934 19 C 0.439 3.561 20 O -0.620 6.620 21 N -0.572 5.572 22 C -0.337 4.337 23 H 0.081 0.919 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.996 3.004 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.270 1.270 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.040 0.960 39 H 0.054 0.946 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.019 0.981 50 H 0.341 0.659 51 H 0.054 0.946 52 H 0.105 0.895 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.726 5.982 8.791 32.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.143 4.143 4 C -0.093 4.093 5 H 0.073 0.927 6 C -0.209 4.209 7 C -0.162 4.162 8 C 0.307 3.693 9 O -0.460 6.460 10 N -0.351 5.351 11 C -0.025 4.025 12 C -0.164 4.164 13 C -0.151 4.151 14 C 0.035 3.965 15 H 0.070 0.930 16 C -0.069 4.069 17 N -0.298 5.298 18 C -0.066 4.066 19 C 0.227 3.773 20 O -0.506 6.506 21 N -0.209 5.209 22 C -0.467 4.467 23 H 0.099 0.901 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.820 3.180 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.195 1.195 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.038 0.962 50 H 0.159 0.841 51 H 0.072 0.928 52 H 0.123 0.877 53 H 0.229 0.771 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -30.006 6.234 9.021 31.947 hybrid contribution 1.102 -1.630 -0.419 2.012 sum -28.904 4.603 8.602 30.506 Atomic orbital electron populations 1.21759 0.95078 1.01745 1.02174 1.21591 0.96389 0.97135 1.01641 1.21610 0.92629 0.97013 1.03061 1.20878 0.95969 0.94320 0.98163 0.92695 1.21943 1.00928 1.00819 0.97190 1.21789 0.88640 0.99614 1.06132 1.21208 0.91480 0.81684 0.74910 1.90688 1.71584 1.31976 1.51782 1.48762 1.06186 1.07851 1.72260 1.22635 0.97472 0.80414 1.02018 1.22876 0.92577 1.00773 1.00196 1.22580 0.98792 0.91309 1.02399 1.21391 0.80967 0.98562 0.95579 0.93023 1.22238 0.86670 0.99291 0.98691 1.60116 1.05795 1.60064 1.03820 1.21514 0.90499 0.99082 0.95554 1.20707 0.89827 0.82679 0.84115 1.90478 1.75933 1.51227 1.32979 1.41922 1.06321 1.54235 1.18406 1.19674 0.82319 1.39827 1.04835 0.90127 1.26100 1.05190 0.95682 0.94355 1.69673 1.38322 1.40375 1.07768 0.84943 0.76354 0.78814 0.77927 1.19721 1.19399 1.19497 0.92261 0.92330 0.92911 0.92429 0.92838 0.90654 0.90820 0.92262 0.94065 0.92723 0.86405 0.86823 0.89688 0.87834 0.87433 0.90417 0.90592 0.90304 0.90211 0.96233 0.84119 0.92808 0.87656 0.77051 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 71.98 0.71 -0.70 16 2 C -0.13 -1.55 5.69 30.60 0.17 -1.37 16 3 C -0.11 -1.10 4.68 30.59 0.14 -0.95 16 4 C -0.07 -1.16 2.04 -10.79 -0.02 -1.18 16 5 H 0.05 1.11 7.96 -2.39 -0.02 1.09 16 6 C -0.15 -2.93 8.69 71.98 0.63 -2.31 16 7 C -0.12 -1.57 4.26 29.85 0.13 -1.45 16 8 C 0.52 11.42 7.29 87.65 0.64 12.06 16 9 O -0.58 -18.54 13.14 -3.04 -0.04 -18.58 16 10 N -0.62 -11.81 3.07 -788.06 -2.42 -14.22 16 11 C 0.10 0.97 6.65 86.86 0.58 1.55 16 12 C -0.13 -1.37 7.09 32.07 0.23 -1.15 16 13 C -0.11 -2.14 6.31 31.87 0.20 -1.93 16 14 C 0.14 3.34 2.98 45.34 0.13 3.48 16 15 H 0.05 1.47 8.11 -2.39 -0.02 1.45 16 16 C 0.06 1.75 5.11 86.30 0.44 2.19 16 17 N -0.67 -23.31 5.96 -517.92 -3.09 -26.40 16 18 C 0.07 2.53 6.16 85.56 0.53 3.06 16 19 C 0.44 22.09 7.82 87.66 0.69 22.78 16 20 O -0.62 -35.60 15.78 -3.06 -0.05 -35.64 16 21 N -0.57 -30.70 5.29 -306.97 -1.62 -32.32 16 22 C -0.34 -19.73 9.68 84.04 0.81 -18.92 16 23 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 25 N -0.92 -50.98 13.05 21.66 0.28 -50.69 16 26 Si 1.00 43.81 29.55 68.60 2.03 45.83 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 29 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.06 0.77 6.57 -2.39 -0.02 0.75 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.04 1.09 5.95 -2.39 -0.01 1.08 16 39 H 0.05 1.02 6.57 -2.39 -0.02 1.00 16 40 H 0.12 0.88 7.77 -2.39 -0.02 0.86 16 41 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.10 0.51 7.51 -2.39 -0.02 0.49 16 44 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.08 1.58 7.77 -2.38 -0.02 1.56 16 48 H 0.08 2.11 8.02 -2.38 -0.02 2.09 16 49 H 0.02 0.65 6.87 -2.39 -0.02 0.63 16 50 H 0.34 12.86 8.34 -89.69 -0.75 12.11 16 51 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 52 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 53 H 0.40 20.29 7.90 -92.71 -0.73 19.56 16 54 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -74.82 425.79 0.97 -73.85 By element: Atomic # 1 Polarization: 43.91 SS G_CDS: -0.60 Total: 43.31 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 6.48 Total: 14.87 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -6.84 Total: -123.64 kcal Atomic # 8 Polarization: -54.14 SS G_CDS: -0.09 Total: -54.22 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -74.82 0.97 -73.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319057155.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.128 kcal (2) G-P(sol) polarization free energy of solvation -74.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds