Wall clock time and date at job start Tue Mar 31 2020 23:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46913 * 2 1 4 4 C 1.52998 * 109.46893 * 119.99806 * 2 1 3 5 5 H 1.09004 * 109.46813 * 183.50509 * 4 2 1 6 6 C 1.50700 * 109.47339 * 303.50307 * 4 2 1 7 7 O 1.21278 * 120.00175 * 93.72300 * 6 4 2 8 8 N 1.34777 * 120.00386 * 273.72676 * 6 4 2 9 9 C 1.46491 * 120.00464 * 174.81053 * 8 6 4 10 10 C 1.53005 * 109.47539 * 180.27280 * 9 8 6 11 11 H 1.08994 * 109.50893 * 305.11033 * 10 9 8 12 12 C 1.53285 * 109.51402 * 184.99955 * 10 9 8 13 13 N 1.47153 * 108.38654 * 187.77378 * 12 10 9 14 14 C 1.36933 * 120.98592 * 230.56291 * 13 12 10 15 15 H 1.07991 * 120.00213 * 28.47157 * 14 13 12 16 16 C 1.38816 * 119.99600 * 208.47633 * 14 13 12 17 17 N 1.31617 * 120.00585 * 13.00384 * 16 14 13 18 18 Si 1.86798 * 119.99633 * 192.99695 * 16 14 13 19 19 H 1.48498 * 109.47297 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46965 * 120.00319 * 18 16 14 21 21 H 1.48498 * 109.47666 * 239.99962 * 18 16 14 22 22 C 1.47160 * 118.03320 * 50.53966 * 13 12 10 23 23 C 1.53297 * 108.38251 * 309.46518 * 22 13 12 24 24 O 1.42965 * 109.22096 * 52.30332 * 23 22 13 25 25 N 1.46898 * 109.46963 * 63.50460 * 4 2 1 26 26 C 1.48525 * 111.00062 * 57.60458 * 25 4 2 27 27 C 1.54940 * 103.22682 * 159.71956 * 26 25 4 28 28 C 1.54590 * 102.92008 * 322.58213 * 27 26 25 29 29 C 1.47906 * 110.99764 * 175.00011 * 25 4 2 30 30 H 1.08998 * 109.47868 * 300.00328 * 1 2 3 31 31 H 1.09003 * 109.47190 * 60.00555 * 1 2 3 32 32 H 1.09002 * 109.46998 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47621 * 240.00150 * 2 1 3 34 34 H 1.09003 * 109.46784 * 61.29690 * 3 2 1 35 35 H 1.08993 * 109.47044 * 181.29815 * 3 2 1 36 36 H 1.08997 * 109.47172 * 301.30147 * 3 2 1 37 37 H 0.97003 * 119.99372 * 355.08756 * 8 6 4 38 38 H 1.08999 * 109.47675 * 300.27851 * 9 8 6 39 39 H 1.09005 * 109.47164 * 60.27612 * 9 8 6 40 40 H 1.09005 * 109.68702 * 307.50361 * 12 10 9 41 41 H 1.09003 * 109.67950 * 68.01826 * 12 10 9 42 42 H 0.96991 * 120.00147 * 179.97438 * 17 16 14 43 43 H 1.08995 * 109.68133 * 69.18364 * 22 13 12 44 44 H 1.08992 * 109.68240 * 189.70606 * 22 13 12 45 45 H 1.08995 * 109.51146 * 172.22397 * 23 22 13 46 46 H 1.08999 * 109.51374 * 292.37899 * 23 22 13 47 47 H 1.08997 * 110.66696 * 278.15547 * 26 25 4 48 48 H 1.08999 * 110.67057 * 41.28182 * 26 25 4 49 49 H 1.09009 * 110.72303 * 204.22612 * 27 26 25 50 50 H 1.08996 * 110.72250 * 80.94385 * 27 26 25 51 51 H 1.08995 * 110.31239 * 263.03801 * 28 27 26 52 52 H 1.09012 * 110.30498 * 140.87620 * 28 27 26 53 53 H 1.08997 * 109.91660 * 333.50466 * 29 25 4 54 54 H 1.08996 * 109.91935 * 94.60286 * 29 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1281 -0.6671 1.2812 6 6 1.4680 -0.0627 2.4782 7 8 0.4471 -0.4890 2.9751 8 7 2.0908 1.0001 3.0251 9 6 1.4768 1.7103 4.1496 10 6 2.3787 2.8714 4.5732 11 1 3.3787 2.4956 4.7890 12 6 1.8004 3.5380 5.8266 13 7 2.5753 4.7581 6.1029 14 6 3.0893 4.9997 7.3489 15 1 3.3475 4.1745 7.9959 16 6 3.2784 6.3055 7.7803 17 7 2.7369 7.3035 7.1148 18 14 4.3015 6.6461 9.3057 19 1 4.7954 5.3632 9.8671 20 1 5.4574 7.5057 8.9447 21 1 3.4654 7.3405 10.3177 22 6 2.7820 5.7106 5.0004 23 6 3.3124 4.9382 3.7872 24 8 2.4464 3.8331 3.5175 25 7 1.6206 -2.1284 1.2077 26 6 2.1189 -2.7963 -0.0218 27 6 2.0600 -4.3009 0.3433 28 6 2.4793 -4.3122 1.8312 29 6 2.1959 -2.8866 2.3398 30 1 -0.3635 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6957 1.9496 0.9014 35 1 3.1296 1.4427 -0.0233 36 1 1.6577 1.9631 -0.8781 37 1 2.9438 1.2971 2.6714 38 1 0.5038 2.0976 3.8471 39 1 1.3503 1.0243 4.9872 40 1 0.7556 3.7975 5.6557 41 1 1.8753 2.8554 6.6731 42 1 2.8688 8.2158 7.4165 43 1 1.8361 6.1888 4.7462 44 1 3.5070 6.4673 5.3001 45 1 3.3416 5.5979 2.9200 46 1 4.3162 4.5706 4.0000 47 1 1.4672 -2.5799 -0.8682 48 1 3.1435 -2.4923 -0.2364 49 1 2.7651 -4.8723 -0.2605 50 1 1.0477 -4.6871 0.2248 51 1 3.5405 -4.5429 1.9235 52 1 1.8841 -5.0373 2.3865 53 1 3.1239 -2.4179 2.6672 54 1 1.4848 -2.9181 3.1653 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319330335.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:55 Heat of formation + Delta-G solvation = -76.199960 kcal Electronic energy + Delta-G solvation = -31410.672305 eV Core-core repulsion = 27382.124430 eV Total energy + Delta-G solvation = -4028.547875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.55586 -40.21146 -39.16133 -36.51189 -36.48089 -35.72455 -33.36951 -32.37825 -32.14821 -29.84005 -29.33711 -28.09644 -27.69854 -26.36097 -24.96850 -23.56008 -22.71793 -22.24578 -21.64149 -21.17018 -20.29531 -18.89752 -18.11902 -17.61528 -17.59457 -16.95947 -16.78784 -16.61307 -16.29001 -15.96938 -15.55802 -15.39751 -15.03105 -14.91671 -14.74011 -14.57413 -14.52859 -14.33686 -13.95880 -13.62880 -13.29561 -13.24910 -13.18439 -13.05577 -12.95814 -12.80089 -12.73111 -12.51542 -12.23363 -12.17773 -12.13819 -12.06284 -11.91316 -11.86059 -11.76292 -11.66355 -11.40771 -11.34210 -10.80622 -10.69481 -10.54883 -10.05523 -9.34565 -8.74166 -7.92435 -5.43595 1.44770 1.46364 1.57006 1.66313 2.05582 2.46061 2.76590 2.97632 3.23366 3.47339 3.57028 3.74349 3.84048 3.93495 3.97183 4.00335 4.05182 4.10781 4.23871 4.27428 4.36653 4.40675 4.47546 4.51034 4.59565 4.61372 4.70242 4.71198 4.71509 4.76288 4.81294 4.89305 4.93652 5.00259 5.02610 5.04632 5.05065 5.09540 5.16407 5.21893 5.23520 5.32037 5.40214 5.43527 5.49025 5.55089 5.60323 5.90028 5.97675 6.25097 6.32810 6.59364 7.05286 7.29520 7.71926 8.26424 9.13329 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021176 B = 0.002376 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.931611 B =11783.491537 C =12505.844115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 C -0.157 4.157 4 C 0.070 3.930 5 H 0.077 0.923 6 C 0.520 3.480 7 O -0.562 6.562 8 N -0.715 5.715 9 C 0.144 3.856 10 C 0.082 3.918 11 H 0.068 0.932 12 C 0.117 3.883 13 N -0.613 5.613 14 C -0.265 4.265 15 H 0.071 0.929 16 C -0.050 4.050 17 N -0.937 5.937 18 Si 0.973 3.027 19 H -0.265 1.265 20 H -0.287 1.287 21 H -0.293 1.293 22 C 0.144 3.856 23 C 0.054 3.946 24 O -0.386 6.386 25 N -0.510 5.510 26 C 0.033 3.967 27 C -0.118 4.118 28 C -0.126 4.126 29 C 0.034 3.966 30 H 0.026 0.974 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.411 0.589 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.016 0.984 41 H 0.070 0.930 42 H 0.252 0.748 43 H -0.002 1.002 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.051 0.949 47 H 0.091 0.909 48 H 0.059 0.941 49 H 0.092 0.908 50 H 0.069 0.931 51 H 0.080 0.920 52 H 0.071 0.929 53 H 0.041 0.959 54 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.855 -20.238 -18.389 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 C -0.215 4.215 4 C -0.042 4.042 5 H 0.095 0.905 6 C 0.306 3.694 7 O -0.439 6.439 8 N -0.368 5.368 9 C 0.019 3.981 10 C 0.023 3.977 11 H 0.086 0.914 12 C -0.010 4.010 13 N -0.338 5.338 14 C -0.395 4.395 15 H 0.089 0.911 16 C -0.245 4.245 17 N -0.582 5.582 18 Si 0.801 3.199 19 H -0.189 1.189 20 H -0.213 1.213 21 H -0.220 1.220 22 C 0.018 3.982 23 C -0.023 4.023 24 O -0.306 6.306 25 N -0.235 5.235 26 C -0.093 4.093 27 C -0.156 4.156 28 C -0.164 4.164 29 C -0.094 4.094 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.247 0.753 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.034 0.966 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.086 0.914 45 H 0.127 0.873 46 H 0.069 0.931 47 H 0.109 0.891 48 H 0.077 0.923 49 H 0.111 0.889 50 H 0.088 0.912 51 H 0.098 0.902 52 H 0.090 0.910 53 H 0.059 0.941 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.447 -20.385 -18.113 27.379 hybrid contribution 1.316 1.227 1.479 2.329 sum 3.762 -19.159 -16.634 25.650 Atomic orbital electron populations 1.21700 0.95061 1.02001 1.00557 1.21105 0.96369 0.96286 0.95648 1.22001 1.01985 0.94890 1.02655 1.21917 0.98488 0.90374 0.93433 0.90534 1.20813 0.84086 0.79669 0.84793 1.90677 1.25812 1.64083 1.63353 1.45959 1.25281 1.30939 1.34580 1.21099 0.95849 0.91402 0.89704 1.22594 0.98769 0.88229 0.88149 0.91402 1.21592 0.93627 0.89387 0.96345 1.44324 1.60865 1.21002 1.07562 1.19566 1.35168 0.91839 0.92946 0.91113 1.25911 1.01238 0.96154 1.01233 1.70163 1.46655 0.98822 1.42601 0.85126 0.77900 0.78003 0.78913 1.18935 1.21326 1.22018 1.21312 0.97927 0.92125 0.86819 1.23159 0.92423 0.88148 0.98591 1.87809 1.67920 1.34331 1.40500 1.64540 1.56124 0.99572 1.03313 1.23374 0.99325 0.94008 0.92627 1.22475 1.02469 0.95372 0.95303 1.22378 1.02104 0.95025 0.96928 1.22849 0.97271 0.94884 0.94427 0.95525 0.91848 0.92210 0.87828 0.93501 0.90871 0.91202 0.75318 0.92351 0.89973 0.96646 0.91195 0.93901 0.98435 0.91404 0.87286 0.93076 0.89097 0.92308 0.88918 0.91178 0.90159 0.91027 0.94102 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.66 71.98 0.62 -2.27 16 2 C -0.08 -1.27 2.47 -10.79 -0.03 -1.29 16 3 C -0.16 -2.61 8.74 71.98 0.63 -1.98 16 4 C 0.07 1.36 1.37 44.17 0.06 1.42 16 5 H 0.08 1.20 7.96 -2.38 -0.02 1.18 16 6 C 0.52 13.80 4.66 87.66 0.41 14.21 16 7 O -0.56 -19.60 15.46 -3.02 -0.05 -19.64 16 8 N -0.71 -17.81 4.26 -463.07 -1.97 -19.79 16 9 C 0.14 4.27 5.35 86.38 0.46 4.73 16 10 C 0.08 2.73 2.81 30.69 0.09 2.82 16 11 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 12 C 0.12 4.87 6.02 86.35 0.52 5.39 16 13 N -0.61 -30.72 3.04 -697.55 -2.12 -32.84 16 14 C -0.27 -14.40 9.65 84.03 0.81 -13.59 16 15 H 0.07 3.71 7.86 -2.92 -0.02 3.69 16 16 C -0.05 -2.75 5.02 84.86 0.43 -2.32 16 17 N -0.94 -54.83 11.06 21.65 0.24 -54.59 16 18 Si 0.97 44.07 29.57 68.60 2.03 46.10 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 22 C 0.14 6.88 5.41 86.35 0.47 7.34 16 23 C 0.05 1.96 6.99 72.08 0.50 2.47 16 24 O -0.39 -13.48 10.33 -148.98 -1.54 -15.02 16 25 N -0.51 -10.04 4.17 -862.26 -3.60 -13.64 16 26 C 0.03 0.43 5.31 86.65 0.46 0.89 16 27 C -0.12 -1.34 7.06 31.80 0.22 -1.12 16 28 C -0.13 -1.72 6.93 31.47 0.22 -1.50 16 29 C 0.03 0.66 5.82 86.44 0.50 1.16 16 30 H 0.03 0.73 6.71 -2.39 -0.02 0.71 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.35 7.71 -2.39 -0.02 1.34 16 33 H 0.10 1.28 6.70 -2.39 -0.02 1.27 16 34 H 0.05 1.02 6.31 -2.39 -0.02 1.00 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.41 8.58 8.16 -92.71 -0.76 7.83 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 40 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.07 2.77 7.96 -2.39 -0.02 2.75 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.07 3.59 6.18 -2.39 -0.01 3.58 16 45 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.09 1.07 7.57 -2.39 -0.02 1.05 16 48 H 0.06 0.61 8.02 -2.39 -0.02 0.60 16 49 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 50 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.07 0.98 8.14 -2.38 -0.02 0.97 16 53 H 0.04 0.77 7.65 -2.39 -0.02 0.75 16 54 H 0.06 1.41 7.94 -2.39 -0.02 1.39 16 Total: -1.00 -68.96 410.53 -0.53 -69.49 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.11 Total: 23.57 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 6.38 Total: 16.36 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -7.46 Total: -120.85 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.59 Total: -34.66 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -68.96 -0.53 -69.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319330335.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.712 kcal (2) G-P(sol) polarization free energy of solvation -68.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds