Wall clock time and date at job start Tue Mar 31 2020 23:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47232 * 2 1 4 4 C 1.53004 * 109.47033 * 119.99851 * 2 1 3 5 5 H 1.09003 * 109.47172 * 58.52056 * 4 2 1 6 6 C 1.50693 * 109.47472 * 298.51266 * 4 2 1 7 7 O 1.21284 * 120.00462 * 257.13702 * 6 4 2 8 8 N 1.34782 * 119.99746 * 77.13259 * 6 4 2 9 9 C 1.46502 * 119.99720 * 183.30274 * 8 6 4 10 10 C 1.53003 * 109.46691 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.51252 * 59.90172 * 10 9 8 12 12 C 1.53300 * 109.50853 * 180.02562 * 10 9 8 13 13 N 1.47156 * 108.38143 * 172.22861 * 12 10 9 14 14 C 1.36934 * 120.98212 * 129.44084 * 13 12 10 15 15 H 1.08002 * 120.00200 * 207.30664 * 14 13 12 16 16 C 1.38816 * 120.00194 * 27.30486 * 14 13 12 17 17 N 1.31621 * 120.00061 * 14.32506 * 16 14 13 18 18 Si 1.86801 * 120.00061 * 194.04823 * 16 14 13 19 19 H 1.48504 * 109.47123 * 60.00104 * 18 16 14 20 20 H 1.48508 * 109.46780 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47293 * 299.99842 * 18 16 14 22 22 C 1.47147 * 118.03449 * 309.70968 * 13 12 10 23 23 C 1.52886 * 108.60640 * 50.23251 * 22 13 12 24 24 O 1.42958 * 109.29443 * 307.93245 * 23 22 13 25 25 N 1.46907 * 109.47114 * 178.51376 * 4 2 1 26 26 C 1.48529 * 111.00047 * 182.66767 * 25 4 2 27 27 C 1.54937 * 103.22559 * 159.72198 * 26 25 4 28 28 C 1.54594 * 102.92248 * 322.58507 * 27 26 25 29 29 C 1.47902 * 110.99972 * 300.06313 * 25 4 2 30 30 H 1.08998 * 109.47325 * 53.85413 * 1 2 3 31 31 H 1.09002 * 109.47230 * 173.85753 * 1 2 3 32 32 H 1.09005 * 109.46997 * 293.85247 * 1 2 3 33 33 H 1.08997 * 109.47504 * 240.00099 * 2 1 3 34 34 H 1.09000 * 109.46999 * 181.28001 * 3 2 1 35 35 H 1.08996 * 109.46986 * 301.28072 * 3 2 1 36 36 H 1.09002 * 109.46731 * 61.28140 * 3 2 1 37 37 H 0.96991 * 119.99951 * 3.30343 * 8 6 4 38 38 H 1.09001 * 109.47474 * 60.00339 * 9 8 6 39 39 H 1.08996 * 109.47225 * 299.99672 * 9 8 6 40 40 H 1.08990 * 109.68415 * 52.50052 * 12 10 9 41 41 H 1.09001 * 109.67840 * 291.94738 * 12 10 9 42 42 H 0.96998 * 120.00768 * 180.02562 * 17 16 14 43 43 H 1.08996 * 109.68251 * 170.01081 * 22 13 12 44 44 H 1.08999 * 109.68558 * 290.56501 * 22 13 12 45 45 H 1.09004 * 109.58213 * 187.92292 * 23 22 13 46 46 H 1.08998 * 109.36714 * 67.81742 * 23 22 13 47 47 H 1.09005 * 110.66207 * 278.15496 * 26 25 4 48 48 H 1.08998 * 110.66912 * 41.28234 * 26 25 4 49 49 H 1.08996 * 110.72064 * 204.22592 * 27 26 25 50 50 H 1.08996 * 110.87872 * 81.01494 * 27 26 25 51 51 H 1.09008 * 110.30714 * 263.04180 * 28 27 26 52 52 H 1.09000 * 110.39526 * 140.92092 * 28 27 26 53 53 H 1.09004 * 109.92029 * 333.50980 * 29 25 4 54 54 H 1.09002 * 109.91776 * 94.80042 * 29 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6551 -1.7410 1.2627 6 6 1.5680 0.0101 2.4795 7 8 2.3349 0.7206 3.0942 8 7 0.2935 -0.1254 2.8965 9 6 -0.1853 0.6413 4.0495 10 6 -1.6546 0.3044 4.3112 11 1 -1.7528 -0.7616 4.5162 12 6 -2.1568 1.1066 5.5171 13 7 -3.6106 0.9099 5.6325 14 6 -4.1799 0.5421 6.8223 15 1 -5.1070 -0.0118 6.8290 16 6 -3.5654 0.8812 8.0200 17 7 -2.6062 1.7823 8.0355 18 14 -4.1052 0.0642 9.6108 19 1 -3.9032 -1.4033 9.5069 20 1 -3.2985 0.5958 10.7387 21 1 -5.5424 0.3504 9.8514 22 6 -4.4337 1.1141 4.4300 23 6 -3.8212 0.3168 3.2783 24 8 -2.4345 0.6441 3.1622 25 7 3.5086 -0.7524 1.2315 26 6 4.0393 -1.5020 2.3988 27 6 5.4741 -1.8814 1.9539 28 6 5.2983 -2.1954 0.4504 29 6 4.0092 -1.4628 0.0347 30 1 -0.3634 0.6061 -0.8298 31 1 -0.3634 -1.0218 -0.1100 32 1 -0.3633 0.4156 0.9399 33 1 1.8934 -0.5138 -0.8899 34 1 3.1298 1.4426 -0.0230 35 1 1.6581 1.9629 -0.8782 36 1 1.6955 1.9496 0.9013 37 1 -0.3066 -0.7304 2.4333 38 1 -0.0877 1.7071 3.8430 39 1 0.4077 0.3854 4.9275 40 1 -1.9400 2.1646 5.3703 41 1 -1.6654 0.7531 6.4236 42 1 -2.1765 2.0191 8.8723 43 1 -5.4494 0.7656 4.6169 44 1 -4.4501 2.1730 4.1718 45 1 -4.3331 0.5657 2.3487 46 1 -3.9281 -0.7491 3.4796 47 1 4.0663 -0.8665 3.2840 48 1 3.4448 -2.3966 2.5841 49 1 5.8252 -2.7611 2.4932 50 1 6.1586 -1.0451 2.0958 51 1 5.1890 -3.2692 0.2985 52 1 6.1481 -1.8181 -0.1183 53 1 3.2663 -2.1835 -0.3072 54 1 4.2280 -0.7469 -0.7576 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319330341.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:06 Heat of formation + Delta-G solvation = -72.262165 kcal Electronic energy + Delta-G solvation = -31678.190630 eV Core-core repulsion = 27649.813510 eV Total energy + Delta-G solvation = -4028.377119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.59955 -40.21070 -39.14668 -36.59862 -36.43590 -35.76639 -33.26613 -32.47647 -32.15721 -29.80994 -29.21051 -28.16187 -27.71376 -26.39344 -25.04425 -23.49371 -22.57512 -22.32141 -21.68156 -21.22217 -20.24142 -18.92645 -18.21160 -17.56941 -17.54360 -17.08309 -16.64782 -16.54521 -16.25030 -16.07673 -15.54050 -15.34508 -15.04802 -15.02871 -14.73250 -14.56721 -14.46236 -14.36545 -13.91585 -13.71237 -13.43844 -13.23995 -13.08179 -12.99170 -12.97911 -12.77060 -12.66940 -12.52900 -12.28914 -12.20353 -12.12492 -12.00530 -11.89842 -11.83598 -11.76148 -11.66460 -11.41559 -11.31488 -10.85198 -10.64102 -10.56098 -10.04213 -9.34115 -8.75404 -7.91860 -5.41642 1.45462 1.47461 1.54687 1.65555 2.03746 2.46542 2.77520 2.97912 3.23211 3.48538 3.58084 3.73545 3.83857 3.92782 3.99673 4.04989 4.06165 4.12879 4.26630 4.29076 4.32967 4.41221 4.45481 4.50943 4.58430 4.60111 4.67338 4.71469 4.75403 4.81895 4.82339 4.94090 4.96980 4.99341 5.03952 5.04895 5.06983 5.09926 5.15677 5.22282 5.22664 5.32988 5.38476 5.45961 5.48197 5.52495 5.58154 5.89682 5.99759 6.25774 6.32167 6.59054 7.04428 7.28904 7.73147 8.26917 9.13546 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016385 B = 0.002716 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.520351 B =10307.895269 C =11410.060258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.074 4.074 3 C -0.135 4.135 4 C 0.070 3.930 5 H 0.080 0.920 6 C 0.517 3.483 7 O -0.565 6.565 8 N -0.710 5.710 9 C 0.146 3.854 10 C 0.079 3.921 11 H 0.063 0.937 12 C 0.161 3.839 13 N -0.614 5.614 14 C -0.266 4.266 15 H 0.074 0.926 16 C -0.052 4.052 17 N -0.937 5.937 18 Si 0.972 3.028 19 H -0.274 1.274 20 H -0.296 1.296 21 H -0.274 1.274 22 C 0.101 3.899 23 C 0.057 3.943 24 O -0.386 6.386 25 N -0.510 5.510 26 C 0.030 3.970 27 C -0.119 4.119 28 C -0.125 4.125 29 C 0.034 3.966 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.022 0.978 37 H 0.413 0.587 38 H 0.054 0.946 39 H 0.070 0.930 40 H -0.003 1.003 41 H 0.066 0.934 42 H 0.251 0.749 43 H 0.072 0.928 44 H 0.014 0.986 45 H 0.123 0.877 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.044 0.956 49 H 0.083 0.917 50 H 0.065 0.935 51 H 0.081 0.919 52 H 0.081 0.919 53 H 0.059 0.941 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.419 -11.194 -20.724 25.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.093 4.093 3 C -0.193 4.193 4 C -0.042 4.042 5 H 0.097 0.903 6 C 0.304 3.696 7 O -0.443 6.443 8 N -0.364 5.364 9 C 0.021 3.979 10 C 0.019 3.981 11 H 0.081 0.919 12 C 0.034 3.966 13 N -0.339 5.339 14 C -0.396 4.396 15 H 0.092 0.908 16 C -0.247 4.247 17 N -0.583 5.583 18 Si 0.800 3.200 19 H -0.200 1.200 20 H -0.222 1.222 21 H -0.200 1.200 22 C -0.024 4.024 23 C -0.020 4.020 24 O -0.305 6.305 25 N -0.235 5.235 26 C -0.097 4.097 27 C -0.157 4.157 28 C -0.163 4.163 29 C -0.093 4.093 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.250 0.750 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.016 0.984 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.032 0.968 45 H 0.140 0.860 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.063 0.937 49 H 0.102 0.898 50 H 0.084 0.916 51 H 0.100 0.900 52 H 0.100 0.900 53 H 0.078 0.922 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.254 -9.977 -20.299 25.263 hybrid contribution -1.037 -0.740 1.681 2.110 sum 10.217 -10.717 -18.618 23.788 Atomic orbital electron populations 1.22146 0.93744 1.03280 1.03149 1.21100 0.96337 0.96388 0.95486 1.21692 1.01580 0.95551 1.00442 1.21918 0.90135 0.98897 0.93259 0.90292 1.20906 0.81270 0.81745 0.85707 1.90682 1.55082 1.40691 1.57824 1.46044 1.12292 1.45867 1.32240 1.21021 0.91772 0.96027 0.89077 1.22719 0.89509 0.98535 0.87348 0.91936 1.21072 0.84756 0.95091 0.95683 1.44311 1.01938 1.80825 1.06818 1.19525 1.07968 1.28236 0.83867 0.90785 1.25898 0.99787 0.97885 1.01131 1.70159 1.28906 1.32773 1.26440 0.85276 0.77724 0.78318 0.78729 1.20023 1.22212 1.19959 1.21753 0.95585 0.97243 0.87815 1.23007 0.81289 0.98388 0.99316 1.87793 1.20087 1.84802 1.37856 1.64540 1.05841 1.49965 1.03167 1.23248 0.96506 0.95625 0.94361 1.22431 0.95047 1.01635 0.96564 1.22402 0.97608 1.00827 0.95463 1.22987 0.96686 0.96759 0.92833 0.91134 0.90607 0.92778 0.87801 0.92209 0.91645 0.95887 0.74966 0.92746 0.91214 0.98446 0.91548 0.93976 0.90930 0.96787 0.85958 0.92807 0.92268 0.93743 0.89828 0.91576 0.90044 0.90002 0.92250 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 8.52 71.98 0.61 -2.18 16 2 C -0.07 -1.32 2.53 -10.79 -0.03 -1.35 16 3 C -0.14 -3.03 8.79 71.98 0.63 -2.39 16 4 C 0.07 1.49 1.38 44.17 0.06 1.55 16 5 H 0.08 1.37 8.00 -2.39 -0.02 1.35 16 6 C 0.52 15.23 4.86 87.65 0.43 15.66 16 7 O -0.56 -21.67 15.00 -3.04 -0.05 -21.71 16 8 N -0.71 -20.03 4.02 -463.05 -1.86 -21.90 16 9 C 0.15 5.13 5.37 86.38 0.46 5.59 16 10 C 0.08 2.94 2.86 30.70 0.09 3.02 16 11 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 12 C 0.16 7.83 4.72 86.35 0.41 8.24 16 13 N -0.61 -30.73 3.05 -698.34 -2.13 -32.86 16 14 C -0.27 -14.41 9.65 84.03 0.81 -13.60 16 15 H 0.07 3.83 7.87 -2.91 -0.02 3.80 16 16 C -0.05 -2.86 5.00 84.86 0.42 -2.44 16 17 N -0.94 -55.70 11.06 21.65 0.24 -55.46 16 18 Si 0.97 44.37 29.58 68.60 2.03 46.40 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 C 0.10 4.06 6.71 86.22 0.58 4.64 16 23 C 0.06 1.79 6.97 71.94 0.50 2.29 16 24 O -0.39 -13.30 10.14 -148.98 -1.51 -14.81 16 25 N -0.51 -11.04 4.12 -862.23 -3.55 -14.59 16 26 C 0.03 0.67 5.73 86.65 0.50 1.17 16 27 C -0.12 -1.95 7.06 31.80 0.22 -1.72 16 28 C -0.13 -1.54 6.93 31.47 0.22 -1.32 16 29 C 0.03 0.50 5.38 86.44 0.46 0.96 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 1.20 5.29 -2.38 -0.01 1.18 16 33 H 0.10 1.37 7.00 -2.39 -0.02 1.35 16 34 H 0.06 1.41 7.69 -2.39 -0.02 1.39 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.02 0.66 6.99 -2.39 -0.02 0.64 16 37 H 0.41 9.63 6.99 -92.71 -0.65 8.98 16 38 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.07 3.63 6.14 -2.39 -0.01 3.61 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 44 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 46 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.06 1.73 7.03 -2.38 -0.02 1.71 16 48 H 0.04 0.92 7.96 -2.39 -0.02 0.90 16 49 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 52 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 53 H 0.06 0.69 7.53 -2.38 -0.02 0.67 16 54 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -70.13 407.62 -0.23 -70.36 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.22 Total: 26.43 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: 6.38 Total: 18.13 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -7.30 Total: -124.80 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.56 Total: -36.52 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -70.13 -0.23 -70.36 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319330341.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.905 kcal (2) G-P(sol) polarization free energy of solvation -70.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds