Wall clock time and date at job start Tue Mar 31 2020 23:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47312 * 2 1 4 4 C 1.53008 * 109.47144 * 240.00557 * 2 1 3 5 5 N 1.46895 * 109.47553 * 120.00406 * 2 1 3 6 6 C 1.46895 * 111.00019 * 59.99892 * 5 2 1 7 7 C 1.53244 * 109.34218 * 172.74790 * 6 5 2 8 8 N 1.47084 * 108.51853 * 53.83098 * 7 6 5 9 9 C 1.34777 * 120.88129 * 128.83842 * 8 7 6 10 10 O 1.21346 * 120.00229 * 351.94654 * 9 8 7 11 11 C 1.49453 * 119.99668 * 171.95113 * 9 8 7 12 12 O 1.21350 * 120.00222 * 353.27564 * 11 9 8 13 13 N 1.34783 * 119.99635 * 173.28599 * 11 9 8 14 14 C 1.46493 * 119.99723 * 179.97438 * 13 11 9 15 15 C 1.52999 * 109.47320 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.46878 * 300.00128 * 15 14 13 17 17 C 1.53005 * 109.46997 * 59.99886 * 15 14 13 18 18 C 1.50701 * 109.47335 * 179.97438 * 15 14 13 19 19 H 1.07994 * 119.99877 * 0.02562 * 18 15 14 20 20 C 1.37876 * 119.99586 * 180.02562 * 18 15 14 21 21 N 1.31514 * 120.00271 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99672 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47510 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47319 * 119.99787 * 22 20 18 25 25 H 1.48504 * 109.47132 * 239.99469 * 22 20 18 26 26 C 1.47083 * 118.23489 * 308.81523 * 8 7 6 27 27 C 1.46898 * 110.99703 * 295.69742 * 5 2 1 28 28 H 1.08997 * 109.46569 * 299.99704 * 1 2 3 29 29 H 1.09000 * 109.47339 * 59.99803 * 1 2 3 30 30 H 1.09002 * 109.47032 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47695 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47456 * 300.00741 * 3 2 1 33 33 H 1.09006 * 109.47173 * 59.99775 * 3 2 1 34 34 H 1.09002 * 109.46959 * 299.99803 * 4 2 1 35 35 H 1.09000 * 109.47297 * 59.99614 * 4 2 1 36 36 H 1.08994 * 109.47520 * 179.97438 * 4 2 1 37 37 H 1.09004 * 109.49542 * 52.79054 * 6 5 2 38 38 H 1.09001 * 109.51512 * 292.72046 * 6 5 2 39 39 H 1.08999 * 109.63258 * 173.53722 * 7 6 5 40 40 H 1.08996 * 109.62671 * 294.12467 * 7 6 5 41 41 H 0.97002 * 119.99916 * 359.97438 * 13 11 9 42 42 H 1.09004 * 109.47165 * 299.99568 * 14 13 11 43 43 H 1.09004 * 109.47502 * 59.99542 * 14 13 11 44 44 H 1.09000 * 109.47231 * 59.99808 * 16 15 14 45 45 H 1.09007 * 109.47040 * 179.97438 * 16 15 14 46 46 H 1.08997 * 109.47113 * 299.99770 * 16 15 14 47 47 H 1.09000 * 109.46761 * 59.99896 * 17 15 14 48 48 H 1.08992 * 109.47474 * 180.02562 * 17 15 14 49 49 H 1.09003 * 109.46696 * 300.00343 * 17 15 14 50 50 H 0.97001 * 119.99771 * 180.02562 * 21 20 18 51 51 H 1.08998 * 109.62756 * 291.47524 * 26 8 7 52 52 H 1.09003 * 109.62893 * 170.89719 * 26 8 7 53 53 H 1.09005 * 109.49583 * 307.21165 * 27 5 2 54 54 H 1.09000 * 109.49223 * 67.29566 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 2.0198 -0.6925 1.1993 6 6 1.5488 -2.0835 1.2332 7 6 2.2239 -2.8198 2.3953 8 7 1.9930 -2.0548 3.6301 9 6 1.5015 -2.6534 4.7331 10 8 1.1066 -3.7994 4.6766 11 6 1.4427 -1.9057 6.0258 12 8 1.9474 -0.8056 6.1140 13 7 0.8293 -2.4533 7.0938 14 6 0.7722 -1.7206 8.3610 15 6 0.0262 -2.5585 9.4014 16 6 -1.3952 -2.8363 8.9084 17 6 0.7615 -3.8838 9.6112 18 6 -0.0320 -1.8050 10.7052 19 1 0.4177 -0.8263 10.7838 20 6 -0.6593 -2.3653 11.7977 21 7 -1.2074 -3.5570 11.7018 22 14 -0.7321 -1.4311 13.4137 23 1 -0.0468 -0.1226 13.2604 24 1 -2.1505 -1.2061 13.7920 25 1 -0.0566 -2.2220 14.4736 26 6 2.3132 -0.6192 3.6295 27 6 1.6346 0.0304 2.4187 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2494 35 1 1.6767 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2497 37 1 1.8019 -2.5763 0.2944 38 1 0.4678 -2.0987 1.3720 39 1 1.7943 -3.8164 2.4964 40 1 3.2947 -2.8969 2.2072 41 1 0.4257 -3.3325 7.0232 42 1 1.7849 -1.5223 8.7121 43 1 0.2481 -0.7766 8.2117 44 1 -1.3527 -3.3814 7.9655 45 1 -1.9266 -3.4336 9.6494 46 1 -1.9189 -1.8922 8.7589 47 1 1.7742 -3.6858 9.9624 48 1 0.2299 -4.4809 10.3520 49 1 0.8039 -4.4289 8.6682 50 1 -1.6491 -3.9509 12.4703 51 1 3.3926 -0.4849 3.5600 52 1 1.9426 -0.1609 4.5464 53 1 1.9500 1.0708 2.3398 54 1 0.5524 -0.0138 2.5413 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325655431.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:27 Heat of formation + Delta-G solvation = -66.086239 kcal Electronic energy + Delta-G solvation = -31156.924123 eV Core-core repulsion = 27128.814812 eV Total energy + Delta-G solvation = -4028.109311 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.08062 -40.61750 -39.54328 -38.29484 -37.09482 -35.06863 -33.13608 -32.74795 -32.44264 -28.67163 -28.25527 -28.22003 -27.59924 -27.54439 -27.03542 -24.93166 -24.12376 -22.32258 -21.17311 -20.62314 -19.79625 -18.75079 -18.14019 -17.77059 -17.25728 -16.99894 -16.70374 -16.43046 -16.06913 -15.92128 -15.75922 -15.61391 -15.10050 -15.01570 -14.78980 -14.72715 -14.42010 -14.08480 -13.94204 -13.47516 -13.40006 -13.22276 -13.15280 -13.02678 -12.77834 -12.72564 -12.72427 -12.68540 -12.55692 -12.32485 -12.26502 -12.12015 -11.95410 -11.93222 -11.87152 -11.51563 -11.37228 -11.25861 -10.73141 -10.42868 -10.33399 -10.11163 -9.96117 -9.24234 -8.01768 -6.18132 0.30150 1.27363 1.43126 1.47576 1.56675 2.07096 2.39685 2.50719 2.85738 3.22267 3.29515 3.80222 3.82907 3.95527 4.00418 4.17988 4.24274 4.33179 4.33766 4.34607 4.47129 4.48392 4.63928 4.66846 4.70999 4.73738 4.75722 4.84398 4.92585 4.94322 4.97010 5.00520 5.02431 5.02815 5.04647 5.07294 5.16232 5.20370 5.23612 5.32719 5.38153 5.45948 5.50736 5.63738 5.67637 5.89739 6.06322 6.10094 6.15988 6.18358 6.24866 6.40657 6.66561 6.85793 6.93723 7.49928 8.97718 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.002202 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.766572 B =12711.488361 C =13137.515070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.098 3.902 3 C -0.140 4.140 4 C -0.136 4.136 5 N -0.526 5.526 6 C 0.043 3.957 7 C 0.111 3.889 8 N -0.579 5.579 9 C 0.509 3.491 10 O -0.546 6.546 11 C 0.498 3.502 12 O -0.535 6.535 13 N -0.680 5.680 14 C 0.144 3.856 15 C 0.049 3.951 16 C -0.124 4.124 17 C -0.124 4.124 18 C -0.523 4.523 19 H 0.053 0.947 20 C 0.025 3.975 21 N -0.902 5.902 22 Si 0.949 3.051 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.081 3.919 27 C 0.041 3.959 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.031 0.969 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.412 0.588 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.028 0.972 45 H 0.063 0.937 46 H 0.024 0.976 47 H 0.023 0.977 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.260 0.740 51 H 0.082 0.918 52 H 0.124 0.876 53 H 0.107 0.893 54 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.931 5.932 -26.238 27.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.009 3.991 3 C -0.197 4.197 4 C -0.193 4.193 5 N -0.251 5.251 6 C -0.085 4.085 7 C -0.011 4.011 8 N -0.312 5.312 9 C 0.292 3.708 10 O -0.425 6.425 11 C 0.280 3.720 12 O -0.415 6.415 13 N -0.331 5.331 14 C 0.021 3.979 15 C 0.049 3.951 16 C -0.181 4.181 17 C -0.182 4.182 18 C -0.561 4.561 19 H 0.071 0.929 20 C -0.175 4.175 21 N -0.540 5.540 22 Si 0.776 3.224 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.040 4.040 27 C -0.087 4.087 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.049 0.951 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.250 0.750 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.082 0.918 46 H 0.043 0.957 47 H 0.043 0.957 48 H 0.082 0.918 49 H 0.047 0.953 50 H 0.069 0.931 51 H 0.100 0.900 52 H 0.142 0.858 53 H 0.125 0.875 54 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 6.491 5.963 -26.104 27.552 hybrid contribution -1.296 -0.117 1.312 1.848 sum 5.194 5.846 -24.792 25.996 Atomic orbital electron populations 1.22473 0.97003 1.01846 1.02415 1.21200 0.92408 0.95147 0.90327 1.21920 1.01877 0.93667 1.02254 1.21873 1.01831 1.00109 0.95522 1.62267 1.59392 1.01617 1.01860 1.22527 0.97038 0.89826 0.99129 1.22012 1.02138 0.95561 0.81387 1.48123 1.60705 1.11595 1.10772 1.20085 0.78903 0.86484 0.85364 1.90729 1.47680 1.18704 1.85346 1.20290 0.79925 0.86189 0.85624 1.90491 1.47085 1.20435 1.83460 1.46116 1.53997 1.22193 1.10787 1.21561 1.00151 0.94881 0.81285 1.18395 0.92069 0.92757 0.91920 1.21704 0.98803 0.99310 0.98327 1.21708 0.98420 0.98692 0.99354 1.21257 1.36101 1.03036 0.95720 0.92920 1.25513 0.94983 0.95674 1.01334 1.69937 1.37234 1.16080 1.30797 0.85649 0.77492 0.78970 0.80330 1.19538 1.20942 1.20995 1.22894 1.01787 0.78055 1.01308 1.22585 0.97490 0.99487 0.89142 0.93463 0.90893 0.92952 0.91745 0.91036 0.92637 0.92341 0.91122 0.91784 0.87007 0.95081 0.89151 0.88992 0.75044 0.92611 0.92430 0.95317 0.91830 0.95651 0.95742 0.91820 0.95315 0.93089 0.89982 0.85845 0.87517 0.95309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 7.79 71.98 0.56 -1.76 16 2 C 0.10 1.20 0.71 3.53 0.00 1.21 16 3 C -0.14 -1.51 8.12 71.98 0.58 -0.93 16 4 C -0.14 -1.32 8.26 71.98 0.59 -0.72 16 5 N -0.53 -8.16 4.44 -845.74 -3.76 -11.92 16 6 C 0.04 0.69 4.77 86.39 0.41 1.10 16 7 C 0.11 2.16 6.62 86.35 0.57 2.74 16 8 N -0.58 -14.48 3.01 -819.49 -2.47 -16.95 16 9 C 0.51 15.93 7.75 87.27 0.68 16.61 16 10 O -0.55 -19.10 15.96 -3.24 -0.05 -19.15 16 11 C 0.50 17.15 7.74 87.27 0.68 17.83 16 12 O -0.53 -19.20 13.20 -3.25 -0.04 -19.24 16 13 N -0.68 -24.79 4.95 -464.40 -2.30 -27.09 16 14 C 0.14 5.90 4.50 86.38 0.39 6.29 16 15 C 0.05 2.27 0.50 -52.93 -0.03 2.25 16 16 C -0.12 -5.62 8.08 71.98 0.58 -5.04 16 17 C -0.12 -5.67 8.08 71.98 0.58 -5.09 16 18 C -0.52 -27.01 8.01 25.60 0.21 -26.81 16 19 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 20 C 0.02 1.28 5.15 84.65 0.44 1.72 16 21 N -0.90 -48.37 9.35 21.45 0.20 -48.17 16 22 Si 0.95 42.16 29.54 68.60 2.03 44.18 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 C 0.08 1.81 6.10 86.35 0.53 2.34 16 27 C 0.04 0.74 4.81 86.38 0.42 1.16 16 28 H 0.05 0.72 6.67 -2.39 -0.02 0.70 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.74 6.57 -2.39 -0.02 0.72 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 0.64 6.19 -2.38 -0.01 0.63 16 34 H 0.06 0.55 6.25 -2.39 -0.01 0.53 16 35 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.11 1.33 5.95 -2.38 -0.01 1.32 16 38 H 0.03 0.58 6.72 -2.39 -0.02 0.56 16 39 H 0.09 1.92 7.05 -2.39 -0.02 1.91 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.41 14.88 5.65 -92.71 -0.52 14.36 16 42 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.03 1.14 6.86 -2.39 -0.02 1.13 16 45 H 0.06 3.21 6.07 -2.38 -0.01 3.20 16 46 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.02 1.08 8.14 -2.39 -0.02 1.07 16 48 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 49 H 0.03 1.16 6.86 -2.39 -0.02 1.14 16 50 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 51 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.12 3.33 4.45 -37.61 -0.17 3.16 16 53 H 0.11 1.63 5.83 -2.38 -0.01 1.62 16 54 H 0.03 0.59 6.79 -2.39 -0.02 0.57 16 Total: -1.00 -57.68 398.37 1.02 -56.66 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.22 Total: 28.78 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 7.19 Total: 12.88 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -8.32 Total: -104.12 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.09 Total: -38.39 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -57.68 1.02 -56.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325655431.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.427 kcal (2) G-P(sol) polarization free energy of solvation -57.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds