Wall clock time and date at job start Tue Mar 31 2020 23:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47547 * 2 1 4 4 C 1.53005 * 109.47134 * 120.00173 * 2 1 3 5 5 N 1.46505 * 109.46876 * 172.98429 * 4 2 1 6 6 C 1.34780 * 119.99862 * 83.51218 * 5 4 2 7 7 O 1.21354 * 119.99584 * 187.74840 * 6 5 4 8 8 C 1.49447 * 120.00214 * 7.74872 * 6 5 4 9 9 O 1.21354 * 120.00026 * 5.47027 * 8 6 5 10 10 N 1.34771 * 120.00060 * 185.75424 * 8 6 5 11 11 C 1.47081 * 120.88152 * 6.97059 * 10 8 6 12 12 C 1.53694 * 108.27665 * 128.75708 * 11 10 8 13 13 N 1.46893 * 109.25873 * 54.08434 * 12 11 10 14 14 C 1.46897 * 111.00285 * 172.60926 * 13 12 11 15 15 C 1.50704 * 109.46774 * 294.30047 * 14 13 12 16 16 H 1.07995 * 120.00112 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99517 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99628 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00429 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47037 * 89.99811 * 19 17 15 21 21 H 1.48499 * 109.47439 * 210.00432 * 19 17 15 22 22 H 1.48506 * 109.46999 * 330.00550 * 19 17 15 23 23 C 1.46901 * 111.27079 * 296.75653 * 13 12 11 24 24 C 1.47077 * 120.88172 * 187.25070 * 10 8 6 25 25 C 1.46502 * 119.99775 * 263.50600 * 5 4 2 26 26 C 1.53003 * 109.46886 * 123.74201 * 25 5 4 27 27 C 1.52998 * 109.47185 * 243.73923 * 25 5 4 28 28 H 1.09001 * 109.47098 * 299.99726 * 1 2 3 29 29 H 1.09000 * 109.47142 * 60.00086 * 1 2 3 30 30 H 1.09003 * 109.46949 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46874 * 239.99683 * 2 1 3 32 32 H 1.08996 * 109.46714 * 52.59929 * 3 2 1 33 33 H 1.09000 * 109.47550 * 172.60550 * 3 2 1 34 34 H 1.09004 * 109.46870 * 292.60847 * 3 2 1 35 35 H 1.08999 * 109.46971 * 52.98535 * 4 2 1 36 36 H 1.08993 * 109.47126 * 292.98067 * 4 2 1 37 37 H 1.08998 * 109.63394 * 248.52821 * 11 10 8 38 38 H 1.09007 * 109.62784 * 9.10810 * 11 10 8 39 39 H 1.09010 * 109.64856 * 294.07915 * 12 11 10 40 40 H 1.08997 * 109.42268 * 173.94962 * 12 11 10 41 41 H 1.08997 * 109.47572 * 54.29890 * 14 13 12 42 42 H 1.09000 * 109.47546 * 174.30279 * 14 13 12 43 43 H 0.97004 * 120.00296 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.49140 * 303.14847 * 23 13 12 45 45 H 1.08996 * 109.49806 * 183.06108 * 23 13 12 46 46 H 1.08996 * 109.63161 * 350.89522 * 24 10 8 47 47 H 1.09007 * 109.62941 * 111.47687 * 24 10 8 48 48 H 1.08996 * 109.47315 * 3.74417 * 25 5 4 49 49 H 1.09002 * 109.47065 * 66.16464 * 26 25 5 50 50 H 1.08993 * 109.46887 * 186.16187 * 26 25 5 51 51 H 1.09004 * 109.47261 * 306.16617 * 26 25 5 52 52 H 1.09000 * 109.47041 * 62.67808 * 27 25 5 53 53 H 1.08995 * 109.47122 * 182.67630 * 27 25 5 54 54 H 1.08995 * 109.47463 * 302.67916 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4953 -0.8691 1.1678 6 6 4.2979 0.1446 1.5482 7 8 5.4935 0.0787 1.3509 8 6 3.7156 1.3497 2.2131 9 8 2.5368 1.3742 2.5002 10 7 4.4984 2.4117 2.4886 11 6 5.8879 2.4696 2.0099 12 6 6.0947 3.8126 1.2917 13 7 5.7012 4.9073 2.1886 14 6 6.0461 6.2124 1.6092 15 6 7.5447 6.3390 1.5130 16 1 8.1775 5.5307 1.8482 17 6 8.1077 7.4870 0.9968 18 7 9.4155 7.5977 0.9133 19 14 7.0131 8.8849 0.4163 20 1 6.7576 9.8151 1.5453 21 1 7.6877 9.6171 -0.6855 22 1 5.7236 8.3336 -0.0723 23 6 4.2712 4.8388 2.5177 24 6 3.9877 3.5406 3.2810 25 6 4.0781 -2.1188 0.6730 26 6 4.9975 -1.8185 -0.5125 27 6 4.8863 -2.7821 1.7900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.5727 1.9930 0.8164 33 1 3.1220 1.4453 0.1323 34 1 1.7887 1.9167 -0.9487 35 1 1.5778 -1.7063 1.3142 36 1 1.7829 -0.1402 2.1348 37 1 6.5703 2.3948 2.8566 38 1 6.0705 1.6495 1.3154 39 1 5.4834 3.8438 0.3897 40 1 7.1454 3.9221 1.0234 41 1 5.6098 6.2948 0.6138 42 1 5.6544 7.0069 2.2444 43 1 9.8117 8.4051 0.5498 44 1 3.6853 4.8557 1.5987 45 1 3.9994 5.6925 3.1385 46 1 2.9134 3.4290 3.4273 47 1 4.4909 3.5669 4.2476 48 1 3.2809 -2.7901 0.3536 49 1 5.8539 -1.2377 -0.1701 50 1 5.3447 -2.7548 -0.9492 51 1 4.4488 -1.2490 -1.2627 52 1 4.2225 -3.0391 2.6154 53 1 5.3588 -3.6871 1.4084 54 1 5.6535 -2.0925 2.1420 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330397501.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:40 Heat of formation + Delta-G solvation = -47.637193 kcal Electronic energy + Delta-G solvation = -32448.156785 eV Core-core repulsion = 28420.847485 eV Total energy + Delta-G solvation = -4027.309300 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.47130 -40.31257 -39.19030 -38.09252 -35.94622 -35.88303 -34.41735 -32.77190 -32.19730 -30.60410 -28.47036 -28.10614 -27.81100 -27.02234 -25.55088 -24.68113 -23.51776 -22.60750 -21.36676 -21.21851 -19.96509 -18.97344 -18.24590 -17.81731 -17.46164 -17.10497 -16.64108 -16.47361 -16.05819 -15.79929 -15.64501 -15.51332 -15.38590 -15.04798 -14.81352 -14.69315 -14.49808 -14.38508 -14.17261 -14.00351 -13.76212 -13.23439 -13.15932 -13.05472 -12.94265 -12.83880 -12.76216 -12.70018 -12.48264 -12.35228 -12.27658 -12.16716 -12.04763 -11.91463 -11.86421 -11.83502 -11.75591 -11.44591 -11.06875 -10.78549 -10.09321 -9.85860 -9.62679 -9.09934 -8.28714 -6.32284 0.33868 1.25316 1.34149 1.35443 1.45663 2.08618 2.27601 2.33514 3.03463 3.04690 3.15284 3.84627 3.92474 3.93116 3.96607 4.00543 4.11644 4.16072 4.18053 4.25315 4.29434 4.36469 4.45054 4.55249 4.70047 4.72098 4.74967 4.76393 4.78371 4.79613 4.83856 4.86253 4.91110 4.92441 4.95482 4.97026 5.01243 5.06283 5.09443 5.22128 5.23905 5.29520 5.34640 5.40297 5.49269 5.50587 5.66085 5.87994 6.03479 6.20601 6.27699 6.59133 6.65600 6.73887 6.94699 7.31128 8.87659 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015738 B = 0.003061 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.718064 B = 9144.841262 C = 9817.934115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C -0.142 4.142 4 C 0.079 3.921 5 N -0.572 5.572 6 C 0.507 3.493 7 O -0.526 6.526 8 C 0.505 3.495 9 O -0.522 6.522 10 N -0.581 5.581 11 C 0.092 3.908 12 C 0.058 3.942 13 N -0.540 5.540 14 C 0.172 3.828 15 C -0.517 4.517 16 H 0.041 0.959 17 C 0.009 3.991 18 N -0.946 5.946 19 Si 0.946 3.054 20 H -0.263 1.263 21 H -0.283 1.283 22 H -0.255 1.255 23 C 0.041 3.959 24 C 0.121 3.879 25 C 0.137 3.863 26 C -0.169 4.169 27 C -0.163 4.163 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.019 0.981 34 H 0.045 0.955 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.139 0.861 39 H 0.018 0.982 40 H 0.071 0.929 41 H -0.016 1.016 42 H 0.034 0.966 43 H 0.267 0.733 44 H 0.026 0.974 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.085 0.915 48 H 0.121 0.879 49 H 0.059 0.941 50 H 0.083 0.917 51 H 0.047 0.953 52 H 0.062 0.938 53 H 0.086 0.914 54 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.971 -21.806 -0.381 29.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 C -0.200 4.200 4 C -0.042 4.042 5 N -0.304 5.304 6 C 0.290 3.710 7 O -0.405 6.405 8 C 0.290 3.710 9 O -0.401 6.401 10 N -0.314 5.314 11 C -0.030 4.030 12 C -0.071 4.071 13 N -0.264 5.264 14 C 0.046 3.954 15 C -0.555 4.555 16 H 0.059 0.941 17 C -0.188 4.188 18 N -0.587 5.587 19 Si 0.770 3.230 20 H -0.187 1.187 21 H -0.208 1.208 22 H -0.179 1.179 23 C -0.088 4.088 24 C -0.001 4.001 25 C 0.036 3.964 26 C -0.227 4.227 27 C -0.221 4.221 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.122 0.878 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.156 0.844 39 H 0.036 0.964 40 H 0.089 0.911 41 H 0.001 0.999 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.116 0.884 46 H 0.127 0.873 47 H 0.103 0.897 48 H 0.139 0.861 49 H 0.078 0.922 50 H 0.102 0.898 51 H 0.066 0.934 52 H 0.081 0.919 53 H 0.105 0.895 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.579 -21.793 0.056 29.296 hybrid contribution 0.132 1.378 -1.148 1.798 sum -19.447 -20.415 -1.092 28.216 Atomic orbital electron populations 1.21684 0.92815 1.02790 1.02063 1.21377 0.97284 0.95138 0.98182 1.22170 0.98315 0.97924 1.01557 1.22739 0.76976 1.03327 1.01190 1.48118 1.07824 1.13642 1.60780 1.20101 0.86511 0.84651 0.79710 1.90463 1.15775 1.78601 1.55649 1.20165 0.86122 0.84444 0.80297 1.90513 1.14561 1.80497 1.54485 1.48179 1.13769 1.18077 1.51367 1.22934 0.80662 0.98537 1.00868 1.22368 1.00921 0.90815 0.93020 1.61847 1.16307 1.03358 1.44936 1.19938 0.95018 0.88010 0.92482 1.21236 0.91300 1.02396 1.40551 0.94108 1.25820 0.96256 1.01174 0.95560 1.70045 1.11810 1.29221 1.47597 0.85731 0.79410 0.79167 0.78701 1.18734 1.20831 1.17865 1.22527 0.88203 0.98817 0.99242 1.21884 1.01228 0.82937 0.94035 1.21441 0.97213 0.83557 0.94206 1.22249 1.00488 1.02929 0.97027 1.22136 1.00335 1.01114 0.98482 0.92611 0.92528 0.90782 0.91250 0.91664 0.96189 0.93542 0.87769 0.86415 0.91168 0.84447 0.96354 0.91055 0.99867 0.94769 0.92414 0.95609 0.88419 0.87299 0.89714 0.86138 0.92235 0.89827 0.93369 0.91862 0.89509 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 71.98 0.66 -1.06 16 2 C -0.10 -1.65 3.11 -10.79 -0.03 -1.68 16 3 C -0.14 -3.23 7.59 71.98 0.55 -2.68 16 4 C 0.08 1.26 4.98 86.38 0.43 1.69 16 5 N -0.57 -11.10 2.42 -799.38 -1.93 -13.04 16 6 C 0.51 13.16 5.55 87.27 0.48 13.65 16 7 O -0.53 -15.60 9.53 -3.26 -0.03 -15.63 16 8 C 0.51 13.97 5.55 87.27 0.48 14.46 16 9 O -0.52 -13.94 9.87 -3.26 -0.03 -13.97 16 10 N -0.58 -17.37 3.00 -818.62 -2.46 -19.83 16 11 C 0.09 3.07 6.17 86.50 0.53 3.61 16 12 C 0.06 2.30 5.47 86.54 0.47 2.77 16 13 N -0.54 -22.31 4.62 -898.88 -4.15 -26.46 16 14 C 0.17 8.27 3.79 85.56 0.32 8.59 16 15 C -0.52 -29.86 8.96 25.60 0.23 -29.63 16 16 H 0.04 2.63 7.37 -2.91 -0.02 2.60 16 17 C 0.01 0.55 5.47 84.66 0.46 1.01 16 18 N -0.95 -59.22 13.96 21.45 0.30 -58.93 16 19 Si 0.95 44.08 27.47 68.60 1.88 45.97 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 23 C 0.04 1.32 5.62 86.38 0.49 1.80 16 24 C 0.12 3.35 6.61 86.35 0.57 3.92 16 25 C 0.14 2.08 3.27 44.99 0.15 2.23 16 26 C -0.17 -2.98 8.90 71.98 0.64 -2.34 16 27 C -0.16 -2.49 9.21 71.98 0.66 -1.82 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.06 1.63 6.32 -2.39 -0.02 1.61 16 33 H 0.02 0.53 4.71 -2.39 -0.01 0.51 16 34 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.10 1.04 7.81 -2.39 -0.02 1.02 16 36 H 0.12 2.34 4.84 -22.13 -0.11 2.23 16 37 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.14 4.60 4.35 -46.79 -0.20 4.40 16 39 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.07 3.26 6.67 -2.39 -0.02 3.25 16 41 H -0.02 -0.80 7.18 -2.39 -0.02 -0.81 16 42 H 0.03 1.58 7.40 -2.39 -0.02 1.57 16 43 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 44 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.10 2.86 7.99 -2.39 -0.02 2.84 16 46 H 0.11 2.67 7.04 -2.39 -0.02 2.65 16 47 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 48 H 0.12 1.10 7.74 -2.39 -0.02 1.09 16 49 H 0.06 1.42 5.95 -2.39 -0.01 1.41 16 50 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 52 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 54 H 0.04 0.94 6.66 -2.39 -0.02 0.93 16 Total: -1.00 -68.07 397.25 1.21 -66.86 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.53 Total: 20.50 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 7.10 Total: 14.53 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -8.25 Total: -118.26 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.06 Total: -29.60 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.97 kcal Total: -68.07 1.21 -66.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330397501.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.223 kcal (2) G-P(sol) polarization free energy of solvation -68.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds