Wall clock time and date at job start Tue Mar 31 2020 23:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47111 * 2 1 4 4 C 1.52994 * 109.47375 * 240.00007 * 2 1 3 5 5 N 1.46499 * 109.46871 * 119.99685 * 2 1 3 6 6 C 1.34780 * 120.00098 * 60.00247 * 5 2 1 7 7 O 1.21284 * 119.99547 * 0.02562 * 6 5 2 8 8 C 1.50694 * 120.00008 * 179.97438 * 6 5 2 9 9 H 1.09002 * 109.87782 * 301.01208 * 8 6 5 10 10 C 1.54322 * 109.88329 * 62.19310 * 8 6 5 11 11 C 1.55163 * 102.94303 * 141.60882 * 10 8 6 12 12 C 1.55134 * 101.48393 * 324.33121 * 11 10 8 13 13 N 1.47023 * 109.88109 * 180.02562 * 8 6 5 14 14 C 1.34776 * 125.65046 * 61.60589 * 13 8 6 15 15 O 1.21287 * 119.99877 * 0.02562 * 14 13 8 16 16 C 1.50696 * 120.00536 * 180.02562 * 14 13 8 17 17 H 1.09001 * 109.47374 * 39.99723 * 16 14 13 18 18 N 1.46900 * 109.47718 * 159.99871 * 16 14 13 19 19 C 1.53004 * 109.47117 * 280.00002 * 16 14 13 20 20 C 1.52992 * 109.47319 * 174.99536 * 19 16 14 21 21 C 1.53004 * 109.47319 * 180.02562 * 20 19 16 22 22 C 1.50700 * 109.47208 * 180.02562 * 21 20 19 23 23 H 1.08002 * 119.99770 * 0.02562 * 22 21 20 24 24 C 1.37871 * 120.00083 * 180.02562 * 22 21 20 25 25 N 1.31514 * 120.00147 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00278 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47228 * 179.97438 * 26 24 22 28 28 H 1.48501 * 109.46793 * 300.00001 * 26 24 22 29 29 H 1.48500 * 109.47000 * 60.00094 * 26 24 22 30 30 H 1.09000 * 109.47120 * 300.00356 * 1 2 3 31 31 H 1.09004 * 109.46936 * 60.00002 * 1 2 3 32 32 H 1.08996 * 109.46797 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47199 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46903 * 299.99810 * 3 2 1 35 35 H 1.08998 * 109.46714 * 59.99627 * 3 2 1 36 36 H 1.09001 * 109.47141 * 300.00224 * 4 2 1 37 37 H 1.08996 * 109.47266 * 59.99806 * 4 2 1 38 38 H 1.08999 * 109.47055 * 180.02562 * 4 2 1 39 39 H 0.97003 * 119.99934 * 239.99948 * 5 2 1 40 40 H 1.08996 * 110.72126 * 259.97004 * 10 8 6 41 41 H 1.08999 * 110.71897 * 23.24590 * 10 8 6 42 42 H 1.08998 * 111.00204 * 82.57013 * 11 10 8 43 43 H 1.09004 * 110.99968 * 206.38727 * 11 10 8 44 44 H 1.08999 * 110.49692 * 278.45702 * 12 11 10 45 45 H 1.09000 * 110.34061 * 156.05777 * 12 11 10 46 46 H 1.00901 * 110.99748 * 296.04943 * 18 16 14 47 47 H 1.00902 * 110.99500 * 59.99902 * 18 16 14 48 48 H 1.09009 * 109.46730 * 54.99541 * 19 16 14 49 49 H 1.08998 * 109.47285 * 294.99779 * 19 16 14 50 50 H 1.09000 * 109.47364 * 60.00020 * 20 19 16 51 51 H 1.08998 * 109.47610 * 300.00082 * 20 19 16 52 52 H 1.08994 * 109.47074 * 60.00408 * 21 20 19 53 53 H 1.08998 * 109.47285 * 300.00244 * 21 20 19 54 54 H 0.97005 * 119.99661 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 1.6927 -1.9809 1.4096 7 8 0.9959 -2.5704 0.6109 8 6 2.1955 -2.6914 2.6397 9 1 3.2853 -2.6796 2.6551 10 6 1.6420 -2.0041 3.9058 11 6 1.3422 -3.2002 4.8476 12 6 0.8612 -4.2753 3.8380 13 7 1.7108 -4.0794 2.6486 14 6 1.9917 -5.0155 1.7206 15 8 2.7015 -4.7397 0.7766 16 6 1.4238 -6.4048 1.8556 17 1 0.3944 -6.3438 2.2087 18 7 1.4542 -7.0755 0.5490 19 6 2.2603 -7.2025 2.8580 20 6 1.6127 -8.5691 3.0894 21 6 2.4490 -9.3666 4.0922 22 6 1.8113 -10.7130 4.3197 23 1 0.9010 -10.9740 3.8005 24 6 2.3902 -11.6117 5.1905 25 7 3.4985 -11.2937 5.8231 26 14 1.6002 -13.2809 5.4719 27 1 2.4118 -14.0548 6.4453 28 1 0.2279 -13.0950 6.0079 29 1 1.5334 -14.0200 4.1856 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1301 1.4426 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 -1.7489 -1.2492 37 1 1.6768 -0.2074 -2.1391 38 1 3.1301 -0.7216 -1.2489 39 1 2.5760 -0.2191 1.8347 40 1 2.3907 -1.3453 4.3455 41 1 0.7288 -1.4543 3.6781 42 1 2.2440 -3.5235 5.3677 43 1 0.5529 -2.9508 5.5567 44 1 -0.1875 -4.1193 3.5851 45 1 1.0088 -5.2740 4.2490 46 1 0.8573 -6.6037 -0.1136 47 1 2.3984 -7.1445 0.2000 48 1 2.3110 -6.6599 3.8021 49 1 3.2671 -7.3397 2.4633 50 1 1.5620 -9.1117 2.1454 51 1 0.6060 -8.4321 3.4841 52 1 2.4992 -8.8240 5.0362 53 1 3.4558 -9.5038 3.6980 54 1 3.9089 -10.4270 5.6767 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341123268.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:58 Heat of formation + Delta-G solvation = -121.189874 kcal Electronic energy + Delta-G solvation = -31085.102732 eV Core-core repulsion = 27054.603948 eV Total energy + Delta-G solvation = -4030.498784 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.97769 -40.61051 -38.66855 -37.37379 -37.19032 -35.53786 -33.55201 -33.08111 -32.48704 -30.36454 -29.26874 -28.30509 -28.27227 -26.73154 -25.25193 -24.06347 -22.85296 -22.16654 -21.71060 -20.58531 -20.21348 -18.88030 -18.72905 -18.33038 -17.29183 -17.15856 -16.73453 -16.10593 -16.05167 -15.83988 -15.62798 -15.38593 -15.14182 -14.99872 -14.78698 -14.61901 -14.59146 -14.30585 -14.10002 -13.70769 -13.46981 -13.25190 -13.13829 -13.08063 -13.03944 -12.79984 -12.66690 -12.55537 -12.53635 -12.43164 -12.18345 -12.15466 -12.01691 -11.93577 -11.81655 -11.62026 -11.53669 -11.26521 -10.73430 -10.63296 -10.51073 -10.10482 -9.82152 -9.73898 -8.65886 -6.35414 1.41978 1.53893 1.62059 1.62860 1.76126 1.82182 2.28173 2.59226 3.18547 3.27186 3.42226 3.45896 3.67537 3.71355 3.87784 3.90892 3.94230 4.00384 4.05419 4.09835 4.13743 4.35562 4.44692 4.49990 4.62089 4.64186 4.65080 4.73286 4.76973 4.79135 4.79404 4.84399 4.89634 4.93583 4.94140 5.01605 5.04914 5.10935 5.16304 5.19171 5.25346 5.30431 5.32844 5.53105 5.60709 5.63590 5.90108 6.06228 6.22737 6.29586 6.34747 6.58478 6.62232 7.00874 7.29897 7.46083 8.74836 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023972 B = 0.002192 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.740135 B =12771.111914 C =13378.289274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.166 3.834 3 C -0.146 4.146 4 C -0.160 4.160 5 N -0.711 5.711 6 C 0.505 3.495 7 O -0.557 6.557 8 C 0.106 3.894 9 H 0.097 0.903 10 C -0.108 4.108 11 C -0.122 4.122 12 C 0.081 3.919 13 N -0.601 5.601 14 C 0.505 3.495 15 O -0.575 6.575 16 C 0.092 3.908 17 H 0.110 0.890 18 N -0.815 5.815 19 C -0.090 4.090 20 C -0.077 4.077 21 C 0.008 3.992 22 C -0.616 4.616 23 H 0.049 0.951 24 C -0.043 4.043 25 N -0.939 5.939 26 Si 1.118 2.882 27 H -0.283 1.283 28 H -0.266 1.266 29 H -0.272 1.272 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.413 0.587 40 H 0.124 0.876 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.114 0.886 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.346 0.654 47 H 0.345 0.655 48 H 0.075 0.925 49 H 0.046 0.954 50 H 0.053 0.947 51 H 0.054 0.946 52 H -0.007 1.007 53 H -0.019 1.019 54 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.693 32.182 -5.117 33.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.081 3.919 3 C -0.203 4.203 4 C -0.218 4.218 5 N -0.365 5.365 6 C 0.290 3.710 7 O -0.435 6.435 8 C -0.002 4.002 9 H 0.115 0.885 10 C -0.146 4.146 11 C -0.160 4.160 12 C -0.040 4.040 13 N -0.334 5.334 14 C 0.293 3.707 15 O -0.454 6.454 16 C -0.023 4.023 17 H 0.127 0.873 18 N -0.344 5.344 19 C -0.128 4.128 20 C -0.115 4.115 21 C -0.029 4.029 22 C -0.654 4.654 23 H 0.068 0.932 24 C -0.239 4.239 25 N -0.577 5.577 26 Si 0.939 3.061 27 H -0.208 1.208 28 H -0.191 1.191 29 H -0.197 1.197 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.250 0.750 40 H 0.142 0.858 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.159 0.841 47 H 0.158 0.842 48 H 0.094 0.906 49 H 0.065 0.935 50 H 0.072 0.928 51 H 0.073 0.927 52 H 0.011 0.989 53 H -0.001 1.001 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.956 29.797 -5.059 30.805 hybrid contribution 0.862 2.202 -1.336 2.716 sum -5.095 31.999 -6.396 33.027 Atomic orbital electron populations 1.22138 0.94620 1.01936 1.02751 1.20425 0.94145 0.93174 0.84180 1.22029 1.01992 0.91990 1.04305 1.22161 1.00619 1.00898 0.98118 1.46018 1.53813 1.11088 1.25584 1.21134 0.79961 0.82419 0.87472 1.90647 1.38941 1.66728 1.47139 1.21815 1.00348 0.82793 0.95225 0.88518 1.22696 1.03204 0.97930 0.90804 1.22857 1.03622 0.92965 0.96576 1.22806 0.94704 1.01946 0.84570 1.48430 1.50206 1.09542 1.25227 1.21995 0.80018 0.87968 0.80704 1.90639 1.39919 1.81988 1.32857 1.21523 1.01113 0.86812 0.92886 0.87262 1.59099 1.16208 1.54697 1.04354 1.21454 0.97905 0.96114 0.97363 1.21165 0.98116 0.93634 0.98543 1.19198 0.94532 0.95086 0.94043 1.22517 1.12063 1.02317 1.28505 0.93250 1.27466 0.95597 1.07862 0.93013 1.70921 1.19740 1.23844 1.43148 0.82936 0.75386 0.70797 0.77025 1.20846 1.19094 1.19741 0.91517 0.90857 0.93983 0.91298 0.89963 0.90238 0.94385 0.90646 0.93098 0.74958 0.85771 0.89456 0.89632 0.86745 0.90510 0.89878 0.84138 0.84183 0.90626 0.93492 0.92774 0.92724 0.98913 1.00111 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.40 71.98 0.60 -1.90 16 2 C 0.17 2.42 1.06 3.61 0.00 2.43 16 3 C -0.15 -1.03 8.59 71.98 0.62 -0.41 16 4 C -0.16 -3.19 8.40 71.98 0.60 -2.58 16 5 N -0.71 -10.37 5.04 -422.92 -2.13 -12.50 16 6 C 0.50 11.38 6.08 87.65 0.53 11.92 16 7 O -0.56 -17.79 11.27 10.28 0.12 -17.67 16 8 C 0.11 2.02 3.26 44.59 0.15 2.16 16 9 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 10 C -0.11 -0.99 6.40 31.78 0.20 -0.78 16 11 C -0.12 -1.29 7.10 32.07 0.23 -1.06 16 12 C 0.08 1.48 6.41 86.92 0.56 2.04 16 13 N -0.60 -14.79 2.84 -791.62 -2.25 -17.04 16 14 C 0.51 16.17 6.25 87.66 0.55 16.72 16 15 O -0.57 -22.30 15.53 10.27 0.16 -22.14 16 16 C 0.09 2.88 2.43 44.17 0.11 2.99 16 17 H 0.11 3.15 7.67 -2.39 -0.02 3.13 16 18 N -0.82 -26.14 8.44 -171.80 -1.45 -27.59 16 19 C -0.09 -3.17 4.70 30.59 0.14 -3.02 16 20 C -0.08 -3.28 5.04 30.59 0.15 -3.13 16 21 C 0.01 0.45 4.28 29.85 0.13 0.58 16 22 C -0.62 -36.41 9.11 25.60 0.23 -36.17 16 23 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 24 C -0.04 -2.54 5.46 84.65 0.46 -2.07 16 25 N -0.94 -59.59 13.65 21.45 0.29 -59.30 16 26 Si 1.12 51.50 29.90 68.60 2.05 53.55 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 1.00 6.17 -2.39 -0.01 0.99 16 33 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.04 1.09 6.17 -2.39 -0.01 1.08 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.41 3.11 8.46 -92.71 -0.78 2.33 16 40 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.09 0.74 7.84 -2.39 -0.02 0.72 16 42 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.08 1.65 6.07 -2.39 -0.01 1.63 16 46 H 0.35 10.36 9.06 -89.69 -0.81 9.55 16 47 H 0.34 11.51 8.58 -89.69 -0.77 10.74 16 48 H 0.08 2.43 6.61 -2.38 -0.02 2.42 16 49 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.05 2.43 7.75 -2.39 -0.02 2.41 16 51 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 52 H -0.01 -0.41 8.01 -2.39 -0.02 -0.43 16 53 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 54 H 0.25 16.32 7.22 -92.70 -0.67 15.65 16 Total: -1.00 -83.42 420.30 0.70 -82.72 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -1.36 Total: 32.28 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 5.27 Total: -12.31 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -5.54 Total: -116.43 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: 0.28 Total: -39.81 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.55 kcal Total: -83.42 0.70 -82.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341123268.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.474 kcal (2) G-P(sol) polarization free energy of solvation -83.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds