Wall clock time and date at job start Tue Mar 31 2020 23:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47295 * 2 1 4 4 C 1.53007 * 109.47268 * 239.99867 * 2 1 3 5 5 N 1.46498 * 109.47171 * 119.99920 * 2 1 3 6 6 C 1.34782 * 120.00311 * 60.00249 * 5 2 1 7 7 O 1.21280 * 119.99357 * 359.97438 * 6 5 2 8 8 C 1.50694 * 120.00363 * 179.97438 * 6 5 2 9 9 H 1.09001 * 109.87592 * 58.98223 * 8 6 5 10 10 C 1.54324 * 110.01149 * 297.88417 * 8 6 5 11 11 C 1.55153 * 102.94150 * 262.70347 * 10 8 6 12 12 C 1.55132 * 101.48647 * 324.33318 * 11 10 8 13 13 N 1.47018 * 109.88333 * 179.97438 * 8 6 5 14 14 C 1.34778 * 125.65055 * 300.59925 * 13 8 6 15 15 O 1.21274 * 120.00184 * 359.97438 * 14 13 8 16 16 C 1.50706 * 119.99806 * 179.97438 * 14 13 8 17 17 H 1.09000 * 109.47161 * 39.99891 * 16 14 13 18 18 N 1.46902 * 109.46577 * 159.99753 * 16 14 13 19 19 C 1.52997 * 109.47103 * 279.99857 * 16 14 13 20 20 C 1.52996 * 109.46894 * 175.00475 * 19 16 14 21 21 C 1.53008 * 109.47120 * 179.97438 * 20 19 16 22 22 C 1.50696 * 109.47005 * 179.97438 * 21 20 19 23 23 H 1.07998 * 120.00435 * 0.02562 * 22 21 20 24 24 C 1.37881 * 119.99624 * 180.02562 * 22 21 20 25 25 N 1.31513 * 120.00081 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99826 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47460 * 89.99568 * 26 24 22 28 28 H 1.48501 * 109.47059 * 209.99483 * 26 24 22 29 29 H 1.48498 * 109.47162 * 329.99456 * 26 24 22 30 30 H 1.08998 * 109.46901 * 299.99804 * 1 2 3 31 31 H 1.08999 * 109.46724 * 60.00222 * 1 2 3 32 32 H 1.08999 * 109.46666 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47475 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46983 * 300.00124 * 3 2 1 35 35 H 1.09005 * 109.46813 * 59.99891 * 3 2 1 36 36 H 1.09000 * 109.46859 * 299.99754 * 4 2 1 37 37 H 1.09001 * 109.46909 * 59.99938 * 4 2 1 38 38 H 1.09001 * 109.46756 * 180.02562 * 4 2 1 39 39 H 0.96999 * 120.00085 * 239.99780 * 5 2 1 40 40 H 1.08999 * 110.71715 * 21.06768 * 10 8 6 41 41 H 1.09005 * 110.71643 * 144.33906 * 10 8 6 42 42 H 1.09004 * 111.00544 * 82.57517 * 11 10 8 43 43 H 1.09003 * 111.00352 * 206.38808 * 11 10 8 44 44 H 1.09000 * 110.49350 * 278.45077 * 12 11 10 45 45 H 1.08999 * 110.34477 * 156.06582 * 12 11 10 46 46 H 1.00903 * 110.99827 * 60.00558 * 18 16 14 47 47 H 1.00905 * 110.99513 * 183.95166 * 18 16 14 48 48 H 1.09001 * 109.47096 * 295.00164 * 19 16 14 49 49 H 1.08994 * 109.47510 * 55.00027 * 19 16 14 50 50 H 1.09001 * 109.46995 * 299.99751 * 20 19 16 51 51 H 1.08998 * 109.47867 * 60.00073 * 20 19 16 52 52 H 1.08993 * 109.46871 * 299.99845 * 21 20 19 53 53 H 1.09003 * 109.46865 * 60.00098 * 21 20 19 54 54 H 0.96997 * 119.99682 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 1.6928 -1.9810 1.4095 7 8 0.9952 -2.5702 0.6114 8 6 2.1956 -2.6915 2.6396 9 1 1.8512 -2.1725 3.5341 10 6 3.7378 -2.7454 2.6251 11 6 4.0308 -4.1586 2.0558 12 6 2.8725 -4.9862 2.6721 13 7 1.7100 -4.0791 2.6491 14 6 0.4168 -4.4589 2.6434 15 8 -0.4609 -3.6221 2.6297 16 6 0.0616 -5.9235 2.6540 17 1 0.7363 -6.4562 3.3241 18 7 -1.3220 -6.0882 3.1195 19 6 0.1948 -6.4908 1.2393 20 6 -0.0443 -8.0016 1.2712 21 6 0.0882 -8.5689 -0.1436 22 6 -0.1467 -10.0571 -0.1121 23 1 -0.3687 -10.5491 0.8233 24 6 -0.0781 -10.7906 -1.2776 25 7 0.1918 -10.1915 -2.4167 26 14 -0.3699 -12.6353 -1.2387 27 1 -1.8145 -12.9124 -1.4420 28 1 0.4154 -13.2836 -2.3196 29 1 0.0575 -13.1765 0.0765 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 -1.7490 -1.2492 37 1 1.6767 -0.2075 -2.1393 38 1 3.1301 -0.7217 -1.2490 39 1 2.5760 -0.2192 1.8346 40 1 4.1445 -1.9741 1.9710 41 1 4.1367 -2.6460 3.6347 42 1 3.9799 -4.1595 0.9669 43 1 4.9978 -4.5257 2.3998 44 1 3.1105 -5.2717 3.6968 45 1 2.6753 -5.8712 2.0671 46 1 -1.9673 -5.6031 2.5142 47 1 -1.5634 -7.0649 3.1970 48 1 -0.5419 -6.0200 0.5883 49 1 1.1964 -6.2893 0.8598 50 1 0.6923 -8.4723 1.9223 51 1 -1.0461 -8.2031 1.6506 52 1 -0.6486 -8.0981 -0.7943 53 1 1.0899 -8.3675 -0.5234 54 1 0.2397 -10.7075 -3.2367 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341123270.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:02 Heat of formation + Delta-G solvation = -114.494187 kcal Electronic energy + Delta-G solvation = -31444.532376 eV Core-core repulsion = 27414.323939 eV Total energy + Delta-G solvation = -4030.208437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.91330 -40.48662 -38.57756 -37.38899 -37.18030 -35.29771 -33.53353 -33.02838 -32.39213 -30.31312 -29.35941 -28.27623 -28.25998 -27.09797 -25.21843 -24.00634 -23.03388 -21.99399 -21.61251 -20.48779 -20.11520 -18.72247 -18.49818 -18.39397 -17.07093 -16.67690 -16.62033 -16.48868 -16.12567 -15.85962 -15.59113 -15.47074 -15.03089 -14.75812 -14.62520 -14.57980 -14.35091 -14.24153 -14.17582 -13.79595 -13.48130 -13.38664 -13.27776 -13.09058 -13.06101 -12.92862 -12.62669 -12.61268 -12.43011 -12.38672 -12.28968 -12.14876 -12.13433 -12.03062 -11.84279 -11.54830 -11.45863 -11.28305 -10.76369 -10.65771 -10.58849 -10.05128 -9.76004 -9.61706 -8.21831 -6.34210 1.38803 1.40667 1.51679 1.54556 1.70774 1.87236 2.29871 2.39530 3.11161 3.36604 3.55225 3.61641 3.71353 3.75508 3.90430 3.93871 3.96741 4.01243 4.06462 4.11640 4.26561 4.34834 4.49847 4.52348 4.64351 4.66095 4.66536 4.74916 4.75930 4.80582 4.84603 4.88503 4.92666 4.94683 4.96707 5.03900 5.14768 5.18895 5.19051 5.24107 5.30002 5.34285 5.36396 5.48318 5.65562 5.67226 5.81300 5.96605 6.20207 6.41468 6.46148 6.66238 6.83437 7.18271 7.35726 7.40361 8.90233 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.002617 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.157234 B =10698.537017 C =11229.755495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.168 3.832 3 C -0.144 4.144 4 C -0.159 4.159 5 N -0.712 5.712 6 C 0.498 3.502 7 O -0.557 6.557 8 C 0.111 3.889 9 H 0.107 0.893 10 C -0.107 4.107 11 C -0.129 4.129 12 C 0.084 3.916 13 N -0.606 5.606 14 C 0.542 3.458 15 O -0.564 6.564 16 C 0.091 3.909 17 H 0.121 0.879 18 N -0.828 5.828 19 C -0.127 4.127 20 C -0.091 4.091 21 C 0.026 3.974 22 C -0.541 4.541 23 H 0.066 0.934 24 C -0.005 4.005 25 N -0.937 5.937 26 Si 0.968 3.032 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.258 1.258 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.414 0.586 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.054 0.946 43 H 0.122 0.878 44 H 0.104 0.896 45 H 0.069 0.931 46 H 0.342 0.658 47 H 0.357 0.643 48 H 0.033 0.967 49 H 0.061 0.939 50 H 0.068 0.932 51 H 0.056 0.944 52 H -0.022 1.022 53 H -0.011 1.011 54 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.103 23.553 13.143 29.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.083 3.917 3 C -0.201 4.201 4 C -0.217 4.217 5 N -0.367 5.367 6 C 0.284 3.716 7 O -0.434 6.434 8 C 0.003 3.997 9 H 0.124 0.876 10 C -0.145 4.145 11 C -0.167 4.167 12 C -0.038 4.038 13 N -0.340 5.340 14 C 0.331 3.669 15 O -0.441 6.441 16 C -0.024 4.024 17 H 0.139 0.861 18 N -0.360 5.360 19 C -0.166 4.166 20 C -0.129 4.129 21 C -0.011 4.011 22 C -0.579 4.579 23 H 0.085 0.915 24 C -0.202 4.202 25 N -0.577 5.577 26 Si 0.792 3.208 27 H -0.200 1.200 28 H -0.208 1.208 29 H -0.182 1.182 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.252 0.748 40 H 0.119 0.881 41 H 0.142 0.858 42 H 0.073 0.927 43 H 0.140 0.860 44 H 0.122 0.878 45 H 0.087 0.913 46 H 0.155 0.845 47 H 0.173 0.827 48 H 0.052 0.948 49 H 0.080 0.920 50 H 0.087 0.913 51 H 0.075 0.925 52 H -0.004 1.004 53 H 0.007 0.993 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.302 23.891 13.064 29.880 hybrid contribution -0.680 -1.303 -1.591 2.166 sum 11.622 22.588 11.473 27.873 Atomic orbital electron populations 1.22164 0.96089 1.01488 1.02104 1.20370 0.93088 0.93557 0.84701 1.22016 1.02477 0.91699 1.03936 1.22160 1.01373 1.00703 0.97472 1.45989 1.54010 1.11051 1.25611 1.21326 0.79734 0.82666 0.87880 1.90708 1.37821 1.67192 1.47679 1.21800 0.98057 0.83902 0.95926 0.87564 1.22754 0.88053 0.98431 1.05258 1.22848 0.99036 0.94720 1.00072 1.22823 0.84542 0.93450 1.02948 1.48281 1.05364 1.07045 1.73337 1.20385 0.81131 0.91068 0.74350 1.90618 1.48308 1.54716 1.50455 1.21309 0.93669 0.91532 0.95910 0.86129 1.58733 1.01696 1.18789 1.56795 1.22135 1.01564 0.96912 0.96038 1.21427 1.01113 0.92398 0.97924 1.18976 0.94399 0.94976 0.92792 1.21702 1.47786 0.94104 0.94264 0.91550 1.26067 0.94854 1.04171 0.95115 1.70127 1.50255 1.38004 0.99327 0.85400 0.78250 0.78760 0.78363 1.19987 1.20810 1.18167 0.92583 0.90930 0.94723 0.90188 0.90174 0.90905 0.94517 0.91082 0.91468 0.74835 0.88137 0.85805 0.92698 0.85982 0.87797 0.91284 0.84498 0.82722 0.94785 0.92048 0.91291 0.92511 1.00367 0.99254 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 8.40 71.98 0.60 -3.20 16 2 C 0.17 3.04 1.06 3.61 0.00 3.05 16 3 C -0.14 -1.36 8.59 71.98 0.62 -0.74 16 4 C -0.16 -3.38 8.40 71.98 0.60 -2.78 16 5 N -0.71 -12.20 4.80 -422.92 -2.03 -14.23 16 6 C 0.50 12.80 6.13 87.65 0.54 13.34 16 7 O -0.56 -20.82 11.06 13.19 0.15 -20.68 16 8 C 0.11 2.20 3.29 44.59 0.15 2.35 16 9 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 10 C -0.11 -1.03 6.45 31.78 0.21 -0.82 16 11 C -0.13 -1.70 7.10 32.06 0.23 -1.47 16 12 C 0.08 1.55 6.40 86.93 0.56 2.10 16 13 N -0.61 -15.60 2.88 -791.65 -2.28 -17.88 16 14 C 0.54 18.43 6.24 87.66 0.55 18.98 16 15 O -0.56 -23.48 15.32 13.21 0.20 -23.28 16 16 C 0.09 2.88 2.48 44.17 0.11 2.99 16 17 H 0.12 3.20 7.67 -2.39 -0.02 3.18 16 18 N -0.83 -26.10 8.94 -171.79 -1.54 -27.64 16 19 C -0.13 -4.77 4.70 30.59 0.14 -4.62 16 20 C -0.09 -3.74 4.92 30.60 0.15 -3.59 16 21 C 0.03 1.40 4.97 29.85 0.15 1.55 16 22 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 23 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 24 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 25 N -0.94 -58.81 13.29 21.45 0.28 -58.53 16 26 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 27 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 28 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 29 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.03 1.16 6.17 -2.39 -0.01 1.15 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.04 1.12 6.17 -2.39 -0.01 1.10 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.41 3.71 8.35 -92.71 -0.77 2.93 16 40 H 0.10 0.69 7.49 -2.39 -0.02 0.67 16 41 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.07 1.54 6.07 -2.39 -0.01 1.53 16 46 H 0.34 11.81 8.58 -89.69 -0.77 11.04 16 47 H 0.36 10.15 7.55 -89.69 -0.68 9.47 16 48 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.06 2.34 6.61 -2.39 -0.02 2.32 16 50 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 51 H 0.06 2.22 6.87 -2.39 -0.02 2.21 16 52 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 53 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 54 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -85.95 418.69 0.80 -85.15 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -1.32 Total: 33.90 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 5.30 Total: -3.63 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -5.56 Total: -118.27 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: 0.35 Total: -43.96 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -85.95 0.80 -85.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341123270.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.349 kcal (2) G-P(sol) polarization free energy of solvation -85.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds