Wall clock time and date at job start Tue Mar 31 2020 23:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47068 * 2 1 4 4 C 1.52999 * 109.46988 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.46800 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00296 * 293.95431 * 5 4 3 7 7 C 1.46901 * 110.99543 * 170.00148 * 5 4 3 8 8 C 1.53006 * 109.46821 * 190.00062 * 7 5 4 9 9 N 1.46501 * 109.47082 * 180.02562 * 8 7 5 10 10 C 1.34774 * 120.00243 * 180.02562 * 9 8 7 11 11 O 1.21357 * 119.99737 * 359.97438 * 10 9 8 12 12 C 1.49450 * 120.00173 * 179.97438 * 10 9 8 13 13 O 1.21345 * 120.00237 * 353.32917 * 12 10 9 14 14 N 1.34779 * 119.99959 * 173.33642 * 12 10 9 15 15 C 1.46926 * 120.62965 * 173.06654 * 14 12 10 16 16 C 1.53192 * 108.89029 * 233.55576 * 15 14 12 17 17 C 1.53071 * 109.29669 * 305.57921 * 16 15 14 18 18 C 1.50702 * 109.44365 * 181.24072 * 17 16 15 19 19 H 1.08007 * 119.99829 * 239.79782 * 18 17 16 20 20 C 1.37879 * 120.00166 * 59.78883 * 18 17 16 21 21 N 1.31515 * 119.99785 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99970 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46998 * 359.97438 * 22 20 18 24 24 H 1.48489 * 109.46978 * 120.00571 * 22 20 18 25 25 H 1.48503 * 109.46712 * 240.00375 * 22 20 18 26 26 C 1.53039 * 109.66157 * 61.15585 * 17 16 15 27 27 C 1.46927 * 120.62872 * 353.08530 * 14 12 10 28 28 H 1.08998 * 109.47155 * 300.00136 * 1 2 3 29 29 H 1.08993 * 109.46838 * 60.00001 * 1 2 3 30 30 H 1.08996 * 109.46986 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47155 * 239.99864 * 2 1 3 32 32 H 1.09000 * 109.47081 * 119.99663 * 2 1 3 33 33 H 1.09005 * 109.46876 * 59.99847 * 3 2 1 34 34 H 1.09000 * 109.46895 * 299.99777 * 3 2 1 35 35 H 1.08998 * 109.46964 * 60.00030 * 4 3 2 36 36 H 1.09000 * 109.47351 * 299.99780 * 4 3 2 37 37 H 1.09003 * 109.47164 * 296.04929 * 6 5 4 38 38 H 1.09003 * 109.47146 * 56.04509 * 6 5 4 39 39 H 1.09000 * 109.47376 * 176.05203 * 6 5 4 40 40 H 1.09001 * 109.47409 * 70.00273 * 7 5 4 41 41 H 1.09003 * 109.47535 * 309.99806 * 7 5 4 42 42 H 1.08993 * 109.47263 * 59.99938 * 8 7 5 43 43 H 1.09003 * 109.47332 * 299.99552 * 8 7 5 44 44 H 0.96998 * 119.99852 * 359.97438 * 9 8 7 45 45 H 1.08995 * 109.58498 * 353.41300 * 15 14 12 46 46 H 1.09003 * 109.58798 * 113.70109 * 15 14 12 47 47 H 1.08998 * 109.49941 * 65.39130 * 16 15 14 48 48 H 1.09008 * 109.49729 * 185.48788 * 16 15 14 49 49 H 1.09009 * 109.34867 * 301.12720 * 17 16 15 50 50 H 0.97002 * 119.99706 * 179.97438 * 21 20 18 51 51 H 1.08999 * 109.49875 * 178.74934 * 26 17 16 52 52 H 1.09001 * 109.52161 * 58.66408 * 26 17 16 53 53 H 1.08997 * 109.58946 * 246.15605 * 27 14 12 54 54 H 1.08998 * 109.59100 * 6.44429 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.7107 3.5088 -1.2538 7 6 5.5084 2.8738 0.2387 8 6 5.9397 4.3220 0.4790 9 7 7.3846 4.3682 0.7165 10 6 7.9911 5.5481 0.9538 11 8 7.3404 6.5724 0.9703 12 6 9.4650 5.5952 1.1966 13 8 10.0961 4.5640 1.3006 14 7 10.0933 6.7831 1.3002 15 6 11.5089 6.8499 1.6881 16 6 11.6515 7.7975 2.8832 17 6 11.0282 9.1509 2.5328 18 6 11.1937 10.0955 3.6954 19 1 10.3238 10.5233 4.1716 20 6 12.4555 10.4134 4.1511 21 7 13.5147 9.8927 3.5710 22 14 12.6606 11.5837 5.5926 23 1 11.3241 12.0279 6.0635 24 1 13.3696 10.8892 6.6970 25 1 13.4511 12.7650 5.1625 26 6 9.5387 8.9693 2.2315 27 6 9.3755 8.0358 1.0278 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.9286 -0.8891 36 1 3.9330 0.9289 0.8909 37 1 4.2178 3.0204 -2.0860 38 1 2.6325 3.4596 -1.4061 39 1 4.0229 4.5517 -1.1998 40 1 6.0328 2.4781 -0.6311 41 1 5.7518 2.2721 1.1145 42 1 5.4153 4.7177 1.3488 43 1 5.6964 4.9237 -0.3967 44 1 7.9046 3.5495 0.7037 45 1 11.8588 5.8558 1.9662 46 1 12.0996 7.2246 0.8521 47 1 11.1371 7.3747 3.7462 48 1 12.7076 7.9307 3.1179 49 1 11.5284 9.5629 1.6563 50 1 14.4025 10.1167 3.8914 51 1 9.0929 9.9376 2.0041 52 1 9.0420 8.5347 3.0990 53 1 9.7919 8.5097 0.1389 54 1 8.3184 7.8240 0.8678 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341165397.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:46 Heat of formation + Delta-G solvation = -84.935193 kcal Electronic energy + Delta-G solvation = -29514.385835 eV Core-core repulsion = 25485.459172 eV Total energy + Delta-G solvation = -4028.926663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.02842 -39.99501 -39.05983 -38.60403 -36.53888 -35.44924 -34.98186 -32.93802 -31.86464 -31.08571 -29.30636 -28.33056 -27.29855 -25.86838 -24.39278 -23.92354 -23.09491 -22.22856 -21.72101 -21.52751 -20.42568 -18.71545 -18.51322 -18.05303 -17.31370 -17.11616 -16.70878 -16.49681 -16.41236 -16.12767 -15.73517 -15.59658 -15.21357 -15.12789 -14.75390 -14.68042 -14.54006 -14.41103 -14.13718 -13.85980 -13.63630 -13.46724 -13.20333 -13.08482 -13.00535 -12.84628 -12.63950 -12.54005 -12.36311 -12.27896 -12.12293 -12.08826 -11.93343 -11.84323 -11.66462 -11.45350 -11.33352 -11.23093 -10.86395 -10.45396 -10.36514 -10.02125 -9.69431 -9.35090 -8.08312 -6.22075 0.28431 1.23805 1.40026 1.42718 1.53431 2.07984 2.39000 2.44001 2.97405 3.17999 3.30297 3.76634 3.95364 4.03814 4.11525 4.13411 4.26934 4.30861 4.35509 4.40384 4.41505 4.44181 4.50911 4.59833 4.61772 4.67069 4.73311 4.74569 4.78287 4.87238 4.90760 4.95514 4.97267 5.01567 5.09123 5.12160 5.13922 5.19924 5.31230 5.35501 5.41358 5.42758 5.44944 5.50641 5.62953 5.95397 5.97269 6.02387 6.07355 6.09410 6.30066 6.38264 6.67745 6.88104 6.89629 7.45961 8.95442 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026564 B = 0.001668 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.803855 B =16786.136096 C =17167.746360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.113 4.113 4 C 0.056 3.944 5 N -0.550 5.550 6 C 0.015 3.985 7 C 0.050 3.950 8 C 0.122 3.878 9 N -0.683 5.683 10 C 0.517 3.483 11 O -0.520 6.520 12 C 0.499 3.501 13 O -0.553 6.553 14 N -0.569 5.569 15 C 0.115 3.885 16 C -0.111 4.111 17 C 0.042 3.958 18 C -0.533 4.533 19 H 0.050 0.950 20 C 0.015 3.985 21 N -0.915 5.915 22 Si 0.951 3.049 23 H -0.270 1.270 24 H -0.282 1.282 25 H -0.280 1.280 26 C -0.109 4.109 27 C 0.057 3.943 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.031 0.969 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.420 0.580 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.024 0.976 48 H 0.080 0.920 49 H 0.004 0.996 50 H 0.261 0.739 51 H 0.066 0.934 52 H 0.041 0.959 53 H 0.066 0.934 54 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.896 -19.650 -11.098 31.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.151 4.151 4 C -0.071 4.071 5 N -0.274 5.274 6 C -0.133 4.133 7 C -0.078 4.078 8 C -0.001 4.001 9 N -0.336 5.336 10 C 0.298 3.702 11 O -0.399 6.399 12 C 0.282 3.718 13 O -0.433 6.433 14 N -0.300 5.300 15 C -0.006 4.006 16 C -0.150 4.150 17 C 0.023 3.977 18 C -0.571 4.571 19 H 0.068 0.932 20 C -0.184 4.184 21 N -0.554 5.554 22 Si 0.777 3.223 23 H -0.194 1.194 24 H -0.208 1.208 25 H -0.205 1.205 26 C -0.148 4.148 27 C -0.064 4.064 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.258 0.742 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.043 0.957 48 H 0.098 0.902 49 H 0.022 0.978 50 H 0.070 0.930 51 H 0.085 0.915 52 H 0.060 0.940 53 H 0.085 0.915 54 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -22.087 -19.214 -10.649 31.151 hybrid contribution 1.367 0.194 0.311 1.415 sum -20.720 -19.020 -10.338 29.966 Atomic orbital electron populations 1.21765 0.95569 1.01868 1.01835 1.21476 0.96150 0.96177 1.02193 1.21592 0.93928 0.97093 1.02441 1.22190 0.96058 0.87573 1.01303 1.61842 1.12535 1.17189 1.35848 1.22570 1.02267 0.99304 0.89182 1.22183 0.88491 0.94825 1.02334 1.21491 0.77700 0.98330 1.02557 1.45621 1.10213 1.08855 1.68897 1.19940 0.87826 0.84598 0.77791 1.90342 1.65783 1.32457 1.51290 1.20244 0.88638 0.83919 0.79031 1.90691 1.67593 1.33168 1.51850 1.48206 1.12074 1.06500 1.63249 1.21802 0.79928 1.00726 0.98185 1.21787 1.03146 0.95474 0.94555 1.18674 0.91453 0.92449 0.95094 1.21599 0.92221 1.26912 1.16382 0.93179 1.25688 0.95837 0.97623 0.99204 1.69969 0.98189 1.44874 1.42412 0.85606 0.78070 0.78978 0.79599 1.19434 1.20753 1.20545 1.21781 0.97857 0.98416 0.96710 1.23291 1.02474 0.82967 0.97618 0.92866 0.92727 0.92372 0.91852 0.91835 0.91900 0.91812 0.94318 0.90374 0.95035 0.90269 0.91229 0.92933 0.89078 0.90788 0.90624 0.74220 0.90035 0.91176 0.95679 0.90212 0.97818 0.92958 0.91496 0.94008 0.91529 0.82764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.12 -0.97 5.93 30.60 0.18 -0.79 16 3 C -0.11 -1.06 5.15 30.60 0.16 -0.91 16 4 C 0.06 0.57 4.96 86.30 0.43 0.99 16 5 N -0.55 -6.81 4.76 -922.44 -4.39 -11.21 16 6 C 0.01 0.16 9.13 127.69 1.17 1.33 16 7 C 0.05 0.60 5.07 86.31 0.44 1.04 16 8 C 0.12 2.02 5.60 86.38 0.48 2.51 16 9 N -0.68 -13.91 5.55 -464.40 -2.58 -16.49 16 10 C 0.52 14.71 7.78 87.27 0.68 15.39 16 11 O -0.52 -16.48 13.10 -3.27 -0.04 -16.52 16 12 C 0.50 16.94 7.74 87.27 0.68 17.62 16 13 O -0.55 -20.01 15.94 -3.23 -0.05 -20.06 16 14 N -0.57 -21.11 2.97 -820.48 -2.44 -23.55 16 15 C 0.12 4.65 6.41 86.36 0.55 5.20 16 16 C -0.11 -5.32 5.16 30.68 0.16 -5.16 16 17 C 0.04 2.10 2.06 -11.50 -0.02 2.07 16 18 C -0.53 -29.54 8.56 25.60 0.22 -29.32 16 19 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 20 C 0.02 0.83 5.30 84.66 0.45 1.28 16 21 N -0.91 -52.18 11.30 21.45 0.24 -51.94 16 22 Si 0.95 43.82 29.54 68.60 2.03 45.84 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 26 C -0.11 -4.62 5.30 30.67 0.16 -4.46 16 27 C 0.06 2.05 6.27 86.37 0.54 2.59 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 34 H 0.06 0.60 6.47 -2.39 -0.02 0.58 16 35 H 0.04 0.37 8.12 -2.39 -0.02 0.35 16 36 H 0.08 0.76 7.93 -2.39 -0.02 0.74 16 37 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.08 0.77 6.30 -2.39 -0.02 0.76 16 39 H 0.07 0.83 6.47 -2.39 -0.02 0.81 16 40 H 0.05 0.55 8.12 -2.39 -0.02 0.54 16 41 H 0.09 0.99 7.93 -2.39 -0.02 0.97 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.08 1.28 6.55 -2.39 -0.02 1.26 16 44 H 0.42 7.33 7.96 -92.71 -0.74 6.59 16 45 H 0.08 3.20 7.05 -2.39 -0.02 3.18 16 46 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.08 4.25 6.03 -2.38 -0.01 4.24 16 49 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 50 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 51 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 52 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 53 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 54 H 0.16 5.28 3.78 -78.70 -0.30 4.99 16 Total: -1.00 -63.50 417.59 -0.40 -63.91 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -0.15 Total: 21.14 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 6.98 Total: 8.88 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -9.17 Total: -103.19 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.09 Total: -36.58 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -63.50 -0.40 -63.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341165397.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.029 kcal (2) G-P(sol) polarization free energy of solvation -63.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds