Wall clock time and date at job start Tue Mar 31 2020 22:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47188 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00025 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00035 * 179.97438 * 5 4 3 8 8 C 1.46499 * 120.00217 * 180.02562 * 7 5 4 9 9 H 1.09005 * 110.27343 * 325.70695 * 8 7 5 10 10 C 1.54593 * 110.31026 * 87.78997 * 8 7 5 11 11 C 1.55198 * 102.80069 * 96.98362 * 10 8 7 12 12 N 1.48537 * 103.23692 * 37.43422 * 11 10 8 13 13 C 1.46900 * 110.99694 * 200.25836 * 12 11 10 14 14 C 1.50707 * 109.46835 * 287.39463 * 13 12 11 15 15 O 1.21280 * 120.00323 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99614 * 180.02562 * 14 13 12 17 17 C 1.46494 * 119.99970 * 0.02562 * 16 14 13 18 18 C 1.53006 * 109.47256 * 90.00198 * 17 16 14 19 19 C 1.46497 * 119.99916 * 180.02562 * 16 14 13 20 20 C 1.50697 * 109.47103 * 89.99987 * 19 16 14 21 21 H 1.08007 * 119.99855 * 0.02562 * 20 19 16 22 22 C 1.37881 * 120.00190 * 180.02562 * 20 19 16 23 23 N 1.31513 * 120.00044 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99879 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47068 * 90.00216 * 24 22 20 26 26 H 1.48501 * 109.47159 * 210.00152 * 24 22 20 27 27 H 1.48504 * 109.47086 * 330.00083 * 24 22 20 28 28 C 1.47894 * 105.81888 * 320.76999 * 12 11 10 29 29 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 33 33 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 34 34 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 35 35 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 36 36 H 1.09000 * 109.47380 * 300.00763 * 4 3 2 37 37 H 1.09001 * 109.46997 * 60.00426 * 4 3 2 38 38 H 0.97002 * 119.99767 * 0.02562 * 7 5 4 39 39 H 1.08996 * 110.72940 * 215.32173 * 10 8 7 40 40 H 1.09001 * 110.72576 * 338.60443 * 10 8 7 41 41 H 1.09002 * 110.68160 * 278.98569 * 11 10 8 42 42 H 1.08998 * 110.78458 * 155.93515 * 11 10 8 43 43 H 1.08997 * 109.47402 * 47.39915 * 13 12 11 44 44 H 1.09002 * 109.46647 * 167.39908 * 13 12 11 45 45 H 1.09006 * 109.47074 * 209.99697 * 17 16 14 46 46 H 1.08997 * 109.47727 * 329.99561 * 17 16 14 47 47 H 1.09000 * 109.46389 * 299.99432 * 18 17 16 48 48 H 1.08994 * 109.47448 * 60.00023 * 18 17 16 49 49 H 1.09002 * 109.46999 * 180.02562 * 18 17 16 50 50 H 1.09005 * 109.47210 * 210.00331 * 19 16 14 51 51 H 1.08996 * 109.47277 * 330.00289 * 19 16 14 52 52 H 0.96995 * 120.00175 * 179.97438 * 23 22 20 53 53 H 1.09005 * 109.92132 * 265.97482 * 28 12 11 54 54 H 1.09000 * 110.08137 * 144.77619 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 8 3.2842 3.7851 -0.0004 7 7 5.3974 3.1095 0.0009 8 6 5.8858 4.4907 0.0009 9 1 5.2157 5.1283 -0.5759 10 6 6.0109 5.0157 1.4496 11 6 7.5138 4.7939 1.7671 12 7 8.1838 5.1112 0.4800 13 6 9.5255 4.5157 0.4242 14 6 10.4499 5.2735 1.3421 15 8 10.0320 6.2164 1.9802 16 7 11.7410 4.9033 1.4538 17 6 12.2459 3.7647 0.6826 18 6 12.7699 4.2559 -0.6684 19 6 12.6395 5.6395 2.3465 20 6 12.6047 5.0177 3.7187 21 1 11.9764 4.1596 3.9070 22 6 13.3748 5.5442 4.7340 23 7 13.3440 5.0018 5.9317 24 14 14.4609 7.0288 4.4086 25 1 13.6951 8.2715 4.6812 26 1 15.6506 6.9758 5.2958 27 1 14.9004 7.0192 2.9901 28 6 7.3120 4.5534 -0.5765 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 3.9330 0.9287 0.8908 37 1 3.9337 0.9286 -0.8892 38 1 6.0277 2.3722 0.0016 39 1 5.7576 6.0747 1.4994 40 1 5.3827 4.4356 2.1256 41 1 7.6983 3.7581 2.0518 42 1 7.8475 5.4725 2.5521 43 1 9.4740 3.4737 0.7397 44 1 9.9040 4.5680 -0.5966 45 1 13.0546 3.2832 1.2326 46 1 11.4398 3.0490 0.5212 47 1 11.9612 4.7373 -1.2184 48 1 13.5760 4.9715 -0.5071 49 1 13.1451 3.4087 -1.2424 50 1 13.6557 5.5978 1.9543 51 1 12.3170 6.6787 2.4103 52 1 13.8861 5.3720 6.6458 53 1 7.6482 3.5518 -0.8451 54 1 7.3290 5.1984 -1.4550 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001402166969.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:06 Heat of formation + Delta-G solvation = -102.876021 kcal Electronic energy + Delta-G solvation = -29894.995416 eV Core-core repulsion = 25865.290780 eV Total energy + Delta-G solvation = -4029.704636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.35254 -40.67951 -39.25271 -36.92378 -36.25015 -35.39352 -34.83405 -32.65883 -31.79803 -31.21619 -29.93388 -29.39728 -27.32641 -25.48238 -24.42570 -23.90185 -22.62115 -22.14509 -21.62045 -21.13954 -19.82671 -19.10687 -18.12843 -18.03310 -17.61540 -17.04802 -16.87451 -16.51590 -16.47816 -15.85585 -15.62764 -15.46154 -14.97263 -14.74260 -14.67555 -14.58275 -14.53615 -14.34025 -13.81773 -13.74379 -13.60103 -13.31580 -13.22603 -13.19816 -13.17552 -12.82451 -12.57235 -12.54322 -12.40408 -12.30094 -12.18011 -12.06258 -12.03068 -11.97722 -11.84887 -11.81534 -11.74136 -11.43761 -10.85467 -10.83728 -10.56916 -10.11784 -9.40420 -9.35149 -8.34773 -6.38949 1.30968 1.35468 1.43334 1.66285 1.87629 2.09972 2.29550 2.30678 2.99808 3.04742 3.47606 3.58072 3.80862 3.81542 3.95357 4.05059 4.08176 4.12393 4.21321 4.25754 4.35708 4.37344 4.38686 4.46532 4.48801 4.62538 4.66532 4.67380 4.77716 4.79575 4.81653 4.93274 4.95215 4.96612 4.99762 5.03296 5.03986 5.04370 5.08148 5.12646 5.29425 5.40201 5.41788 5.45334 5.48029 5.52577 5.68346 5.79699 5.93579 6.25366 6.56034 6.62029 6.78777 7.22510 7.28617 7.52349 8.82007 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018164 B = 0.001973 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.156099 B =14189.156524 C =14585.521246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.134 4.134 5 C 0.508 3.492 6 O -0.587 6.587 7 N -0.713 5.713 8 C 0.142 3.858 9 H 0.089 0.911 10 C -0.123 4.123 11 C 0.043 3.957 12 N -0.518 5.518 13 C 0.043 3.957 14 C 0.496 3.504 15 O -0.580 6.580 16 N -0.603 5.603 17 C 0.099 3.901 18 C -0.161 4.161 19 C 0.228 3.772 20 C -0.532 4.532 21 H 0.029 0.971 22 C 0.011 3.989 23 N -0.945 5.945 24 Si 0.945 3.055 25 H -0.279 1.279 26 H -0.274 1.274 27 H -0.239 1.239 28 C 0.040 3.960 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.415 0.585 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.085 0.915 44 H 0.134 0.866 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.063 0.937 48 H 0.043 0.957 49 H 0.095 0.905 50 H 0.046 0.954 51 H 0.013 0.987 52 H 0.268 0.732 53 H 0.084 0.916 54 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.802 -13.224 -20.710 29.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.158 4.158 3 C -0.143 4.143 4 C -0.173 4.173 5 C 0.296 3.704 6 O -0.467 6.467 7 N -0.366 5.366 8 C 0.036 3.964 9 H 0.107 0.893 10 C -0.163 4.163 11 C -0.085 4.085 12 N -0.243 5.243 13 C -0.088 4.088 14 C 0.285 3.715 15 O -0.459 6.459 16 N -0.336 5.336 17 C -0.024 4.024 18 C -0.219 4.219 19 C 0.105 3.895 20 C -0.571 4.571 21 H 0.048 0.952 22 C -0.187 4.187 23 N -0.585 5.585 24 Si 0.769 3.231 25 H -0.205 1.205 26 H -0.199 1.199 27 H -0.162 1.162 28 C -0.088 4.088 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.252 0.748 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.151 0.849 45 H 0.088 0.912 46 H 0.116 0.884 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.113 0.887 50 H 0.064 0.936 51 H 0.031 0.969 52 H 0.077 0.923 53 H 0.102 0.898 54 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.397 -11.525 -20.299 28.526 hybrid contribution 0.796 -0.136 1.208 1.453 sum -15.602 -11.661 -19.091 27.273 Atomic orbital electron populations 1.21794 0.96041 1.01999 1.01555 1.21525 0.95906 0.95364 1.02989 1.21336 0.93560 0.97439 1.01917 1.21752 0.97311 0.91612 1.06653 1.21435 0.81948 0.92772 0.74197 1.90704 1.56444 1.48280 1.51230 1.46135 1.07312 1.08210 1.74959 1.21591 0.95469 0.83739 0.95627 0.89319 1.22838 0.94670 1.01790 0.96978 1.23185 0.93803 0.98979 0.92557 1.64426 1.00963 1.55550 1.03380 1.22218 0.89159 0.96456 1.00943 1.21233 0.82739 0.84639 0.82920 1.90640 1.75893 1.31411 1.47933 1.48067 1.09610 1.32638 1.43244 1.21772 1.00611 0.87558 0.92414 1.22164 1.01395 1.02548 0.95757 1.19226 0.89954 0.92058 0.88278 1.21568 1.25460 1.14761 0.95320 0.95237 1.25828 0.98358 1.00084 0.94451 1.70042 1.42283 1.43271 1.02900 0.85748 0.78370 0.78924 0.80106 1.20519 1.19931 1.16171 1.23182 0.89604 1.01014 0.94980 0.93380 0.93011 0.91822 0.91183 0.90647 0.92713 0.93344 0.86915 0.86065 0.74795 0.91156 0.90979 0.93257 0.92901 0.89754 0.84864 0.91201 0.88403 0.91799 0.93827 0.88670 0.93604 0.96851 0.92338 0.89825 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.12 -1.10 5.93 30.60 0.18 -0.92 16 3 C -0.10 -1.40 4.50 30.59 0.14 -1.26 16 4 C -0.13 -1.33 5.70 29.85 0.17 -1.16 16 5 C 0.51 9.02 7.83 87.66 0.69 9.71 16 6 O -0.59 -16.21 15.66 -3.04 -0.05 -16.26 16 7 N -0.71 -10.07 5.07 -438.37 -2.22 -12.29 16 8 C 0.14 2.68 3.31 45.87 0.15 2.84 16 9 H 0.09 1.94 7.60 -2.38 -0.02 1.92 16 10 C -0.12 -3.05 6.80 31.89 0.22 -2.83 16 11 C 0.04 1.23 5.94 86.74 0.52 1.75 16 12 N -0.52 -13.55 4.91 -887.01 -4.35 -17.90 16 13 C 0.04 1.08 3.75 85.56 0.32 1.40 16 14 C 0.50 19.50 7.50 87.66 0.66 20.16 16 15 O -0.58 -29.29 14.64 -3.03 -0.04 -29.34 16 16 N -0.60 -23.62 2.46 -826.15 -2.03 -25.65 16 17 C 0.10 2.65 5.93 86.38 0.51 3.16 16 18 C -0.16 -3.19 10.24 71.98 0.74 -2.45 16 19 C 0.23 11.08 4.23 85.63 0.36 11.44 16 20 C -0.53 -31.32 9.94 25.60 0.25 -31.07 16 21 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 22 C 0.01 0.64 5.47 84.66 0.46 1.10 16 23 N -0.94 -59.90 13.96 21.45 0.30 -59.60 16 24 Si 0.95 44.99 27.47 68.60 1.88 46.87 16 25 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 27 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 28 C 0.04 0.65 6.44 86.45 0.56 1.21 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.88 8.10 -2.39 -0.02 0.87 16 35 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 36 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 37 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.41 3.24 8.31 -92.71 -0.77 2.47 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 40 H 0.07 1.78 8.05 -2.39 -0.02 1.76 16 41 H 0.05 1.31 7.81 -2.39 -0.02 1.29 16 42 H 0.05 2.05 7.10 -2.39 -0.02 2.03 16 43 H 0.08 1.74 7.09 -2.39 -0.02 1.72 16 44 H 0.13 2.40 7.13 -2.39 -0.02 2.38 16 45 H 0.07 2.08 8.07 -2.38 -0.02 2.06 16 46 H 0.10 1.96 6.44 -2.39 -0.02 1.94 16 47 H 0.06 1.13 7.22 -2.39 -0.02 1.12 16 48 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.05 2.06 7.13 -2.38 -0.02 2.05 16 51 H 0.01 0.71 6.85 -2.39 -0.02 0.70 16 52 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 53 H 0.08 0.86 7.25 -2.38 -0.02 0.84 16 54 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -85.80 426.51 0.16 -85.64 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.04 Total: 16.33 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 6.64 Total: 12.19 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -8.30 Total: -115.43 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -0.09 Total: -45.60 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal Total: -85.80 0.16 -85.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001402166969.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.236 kcal (2) G-P(sol) polarization free energy of solvation -85.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds