Wall clock time and date at job start Tue Mar 31 2020 22:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47212 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99566 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.47535 * 325.00618 * 8 7 5 10 10 C 1.53003 * 109.47218 * 85.00262 * 8 7 5 11 11 C 1.52999 * 109.47017 * 205.00005 * 8 7 5 12 12 H 1.09006 * 109.50369 * 59.92566 * 11 8 7 13 13 C 1.53116 * 109.50421 * 299.80756 * 11 8 7 14 14 C 1.53131 * 109.15980 * 182.40188 * 13 11 8 15 15 C 1.53038 * 109.27513 * 57.65443 * 14 13 11 16 16 N 1.46848 * 109.52513 * 300.81668 * 15 14 13 17 17 C 1.46892 * 111.00005 * 185.84171 * 16 15 14 18 18 C 1.50703 * 109.47305 * 65.79303 * 17 16 15 19 19 O 1.21288 * 119.99689 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00114 * 179.97438 * 18 17 16 21 21 C 1.37088 * 120.00020 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00116 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00200 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99761 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00158 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47538 * 89.99181 * 25 23 21 27 27 H 1.48503 * 109.47187 * 209.99589 * 25 23 21 28 28 H 1.48507 * 109.47072 * 329.99071 * 25 23 21 29 29 C 1.46854 * 111.19443 * 61.74699 * 16 15 14 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 32 32 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 34 34 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 35 35 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 36 36 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 37 37 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 38 38 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 39 39 H 0.96995 * 120.00011 * 0.02562 * 7 5 4 40 40 H 1.08998 * 109.47302 * 299.99899 * 10 8 7 41 41 H 1.09006 * 109.46570 * 59.99667 * 10 8 7 42 42 H 1.09000 * 109.47614 * 179.97438 * 10 8 7 43 43 H 1.08999 * 109.52172 * 302.30266 * 13 11 8 44 44 H 1.08997 * 109.52103 * 62.49800 * 13 11 8 45 45 H 1.09002 * 109.50226 * 297.71699 * 14 13 11 46 46 H 1.09000 * 109.53494 * 177.61354 * 14 13 11 47 47 H 1.08998 * 109.45789 * 180.80927 * 15 14 13 48 48 H 1.08995 * 109.45713 * 60.83273 * 15 14 13 49 49 H 1.09004 * 109.47333 * 185.79656 * 17 16 15 50 50 H 1.08998 * 109.47252 * 305.78909 * 17 16 15 51 51 H 0.97007 * 119.99895 * 0.02562 * 20 18 17 52 52 H 0.97002 * 120.00038 * 180.02562 * 24 23 21 53 53 H 1.08998 * 109.46268 * 178.24179 * 29 16 15 54 54 H 1.08994 * 109.46321 * 58.27407 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2842 3.7850 -0.0004 7 7 5.3975 3.1094 0.0009 8 6 5.8858 4.4906 0.0009 9 1 5.2137 5.1136 -0.5891 10 6 5.9362 5.0138 1.4378 11 6 7.2888 4.5355 -0.6077 12 1 7.2538 4.1616 -1.6310 13 6 8.2347 3.6644 0.2236 14 6 9.6484 3.7625 -0.3566 15 6 10.0909 5.2275 -0.3643 16 7 9.1547 6.0187 -1.1729 17 6 9.6236 7.4033 -1.3171 18 6 10.9003 7.4205 -2.1176 19 8 11.3733 6.3815 -2.5272 20 7 11.5166 8.5905 -2.3782 21 6 12.6777 8.6062 -3.1069 22 1 13.0988 7.6810 -3.4717 23 6 13.3133 9.8123 -3.3752 24 7 12.8011 10.9380 -2.9309 25 14 14.8950 9.8338 -4.3687 26 1 14.5715 9.9682 -5.8117 27 1 15.7332 10.9823 -3.9401 28 1 15.6380 8.5678 -4.1438 29 6 7.7997 5.9781 -0.6081 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9562 -0.8899 37 1 3.9337 0.9284 -0.8891 38 1 3.9329 0.9287 0.8909 39 1 6.0278 2.3722 0.0016 40 1 4.9367 4.9819 1.8714 41 1 6.6084 4.3907 2.0279 42 1 6.2999 6.0413 1.4379 43 1 8.2395 4.0145 1.2558 44 1 7.8986 2.6281 0.1909 45 1 9.6511 3.3762 -1.3759 46 1 10.3351 3.1782 0.2558 47 1 11.0914 5.3024 -0.7901 48 1 10.1011 5.6090 0.6567 49 1 8.8643 7.9925 -1.8313 50 1 9.8074 7.8292 -0.3307 51 1 11.1385 9.4214 -2.0502 52 1 13.2446 11.7800 -3.1185 53 1 7.1362 6.5982 -1.2109 54 1 7.8208 6.3562 0.4140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480374751.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:46 Heat of formation + Delta-G solvation = -121.138596 kcal Electronic energy + Delta-G solvation = -29711.008853 eV Core-core repulsion = 25680.512293 eV Total energy + Delta-G solvation = -4030.496560 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.27911 -40.49971 -39.42310 -36.99392 -36.12794 -35.83603 -34.01750 -33.24552 -32.88578 -31.21559 -29.62432 -28.91728 -26.51015 -26.12737 -24.85880 -24.02679 -22.45994 -21.85984 -21.16115 -20.94908 -20.05116 -19.83777 -18.01557 -17.76608 -17.15526 -16.83956 -16.62086 -16.45908 -16.24047 -15.88415 -15.64996 -15.54398 -15.26703 -15.02423 -14.79660 -14.61436 -14.38869 -14.06088 -13.95409 -13.80558 -13.48867 -13.42921 -13.22275 -13.19726 -12.97685 -12.78894 -12.58209 -12.41639 -12.40815 -12.16480 -12.12152 -12.05299 -11.91843 -11.84609 -11.59230 -11.43450 -11.42434 -11.32161 -11.12332 -10.78892 -10.22707 -10.04190 -9.98283 -9.13974 -8.45646 -5.94180 1.38158 1.41683 1.54299 1.71983 2.06728 2.20420 2.30439 2.80419 3.21283 3.40239 3.69794 3.77123 3.85855 3.90081 3.97216 4.08928 4.19659 4.24636 4.34534 4.37332 4.39640 4.41130 4.49537 4.50149 4.51326 4.54667 4.67483 4.68915 4.71008 4.80406 4.82479 4.90902 4.96776 5.01368 5.03838 5.05856 5.10903 5.13400 5.18042 5.30220 5.32046 5.34927 5.41060 5.41727 5.51024 5.54715 5.59653 5.92314 6.12740 6.29208 6.61984 6.63291 7.14153 7.34238 7.57862 8.13781 8.71808 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.001669 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.271688 B =16776.100817 C =16910.184906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.135 4.135 5 C 0.506 3.494 6 O -0.589 6.589 7 N -0.715 5.715 8 C 0.155 3.845 9 H 0.066 0.934 10 C -0.161 4.161 11 C -0.079 4.079 12 H 0.074 0.926 13 C -0.109 4.109 14 C -0.107 4.107 15 C 0.051 3.949 16 N -0.532 5.532 17 C 0.057 3.943 18 C 0.442 3.558 19 O -0.612 6.612 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.272 1.272 29 C 0.061 3.939 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.414 0.586 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.054 0.946 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.031 0.969 49 H 0.106 0.894 50 H 0.065 0.935 51 H 0.395 0.605 52 H 0.277 0.723 53 H 0.075 0.925 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.879 -19.688 11.182 29.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.142 4.142 4 C -0.174 4.174 5 C 0.294 3.706 6 O -0.470 6.470 7 N -0.367 5.367 8 C 0.050 3.950 9 H 0.085 0.915 10 C -0.219 4.219 11 C -0.098 4.098 12 H 0.092 0.908 13 C -0.146 4.146 14 C -0.145 4.145 15 C -0.076 4.076 16 N -0.257 5.257 17 C -0.074 4.074 18 C 0.229 3.771 19 O -0.498 6.498 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.067 4.067 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.251 0.749 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.076 0.924 48 H 0.049 0.951 49 H 0.124 0.876 50 H 0.083 0.917 51 H 0.229 0.771 52 H 0.086 0.914 53 H 0.094 0.906 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.064 -19.739 10.429 29.357 hybrid contribution 1.016 1.209 0.183 1.589 sum -18.049 -18.531 10.612 27.960 Atomic orbital electron populations 1.21794 0.96051 1.01989 1.01541 1.21521 0.95885 0.95361 1.02983 1.21329 0.93583 0.97422 1.01867 1.21751 0.97293 0.91782 1.06579 1.21411 0.82076 0.92714 0.74357 1.90691 1.56477 1.48268 1.51529 1.46089 1.07083 1.08814 1.74755 1.20702 0.93972 0.83411 0.96966 0.91540 1.22230 1.01712 1.02065 0.95873 1.21277 0.92921 0.95367 1.00281 0.90761 1.21693 0.93350 1.00297 0.99270 1.21487 0.97444 0.94177 1.01358 1.22184 0.96655 0.94866 0.93924 1.61410 1.02671 1.09707 1.51900 1.21703 0.95048 0.91454 0.99178 1.20753 0.87763 0.83585 0.84961 1.90456 1.68805 1.33169 1.57382 1.41940 1.22943 1.07817 1.48576 1.19658 1.01365 0.94478 1.30662 0.90296 1.26022 1.02506 0.94016 0.98701 1.69676 1.41686 0.98417 1.46471 0.84936 0.77277 0.77978 0.78195 1.19748 1.19571 1.19719 1.22202 0.88780 0.97233 0.98508 0.91815 0.93128 0.93298 0.91037 0.90791 0.92936 0.93219 0.86768 0.86362 0.74864 0.93676 0.90696 0.91159 0.90590 0.89487 0.92670 0.90267 0.92429 0.95085 0.87601 0.91715 0.77124 0.91368 0.90625 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.91 71.98 0.71 -0.83 16 2 C -0.12 -1.06 5.93 30.59 0.18 -0.88 16 3 C -0.10 -1.37 4.50 30.59 0.14 -1.24 16 4 C -0.13 -1.34 5.70 29.85 0.17 -1.17 16 5 C 0.51 9.03 7.79 87.66 0.68 9.72 16 6 O -0.59 -16.24 15.64 -3.03 -0.05 -16.28 16 7 N -0.71 -10.15 5.00 -442.54 -2.21 -12.36 16 8 C 0.16 2.75 2.41 44.99 0.11 2.86 16 9 H 0.07 1.52 7.58 -2.39 -0.02 1.50 16 10 C -0.16 -2.66 8.78 71.98 0.63 -2.03 16 11 C -0.08 -1.50 2.34 -10.74 -0.03 -1.52 16 12 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 13 C -0.11 -1.74 4.77 30.68 0.15 -1.59 16 14 C -0.11 -2.48 6.09 30.65 0.19 -2.29 16 15 C 0.05 1.60 5.11 86.33 0.44 2.04 16 16 N -0.53 -16.97 4.40 -900.93 -3.96 -20.93 16 17 C 0.06 2.02 5.45 85.56 0.47 2.49 16 18 C 0.44 21.21 7.46 87.66 0.65 21.86 16 19 O -0.61 -33.74 13.90 -3.06 -0.04 -33.78 16 20 N -0.58 -29.80 5.29 -306.99 -1.62 -31.43 16 21 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 24 N -0.92 -50.08 13.05 21.66 0.28 -49.80 16 25 Si 0.99 43.17 29.55 68.60 2.03 45.19 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 29 C 0.06 1.42 4.42 86.33 0.38 1.80 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 35 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 36 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 37 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.41 3.49 6.92 -92.71 -0.64 2.85 16 40 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 1.02 6.38 -2.38 -0.02 1.01 16 42 H 0.07 1.15 6.41 -2.39 -0.02 1.13 16 43 H 0.08 1.11 6.31 -2.39 -0.02 1.09 16 44 H 0.09 0.91 6.61 -2.39 -0.02 0.90 16 45 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.06 2.33 5.78 -2.39 -0.01 2.32 16 48 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.11 3.35 7.99 -2.39 -0.02 3.33 16 50 H 0.06 2.05 8.12 -2.39 -0.02 2.03 16 51 H 0.40 19.52 7.90 -92.70 -0.73 18.79 16 52 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 53 H 0.08 1.75 8.02 -2.39 -0.02 1.73 16 54 H 0.05 1.05 6.38 -2.39 -0.02 1.04 16 Total: -1.00 -73.50 417.77 0.10 -73.40 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: -0.48 Total: 35.17 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 6.16 Total: 10.82 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -7.51 Total: -114.52 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -0.09 Total: -50.06 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -73.50 0.10 -73.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480374751.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.740 kcal (2) G-P(sol) polarization free energy of solvation -73.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds