Wall clock time and date at job start Tue Mar 31 2020 22:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46896 * 2 1 4 4 C 1.53001 * 109.46896 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47320 * 305.00069 * 4 3 2 6 6 C 1.52998 * 109.47025 * 65.00200 * 4 3 2 7 7 C 1.50699 * 109.47052 * 184.99766 * 4 3 2 8 8 O 1.21290 * 119.99833 * 344.68282 * 7 4 3 9 9 N 1.34767 * 120.00187 * 164.67767 * 7 4 3 10 10 C 1.47213 * 120.81738 * 174.87238 * 9 7 4 11 11 C 1.53182 * 108.85443 * 126.33675 * 10 9 7 12 12 C 1.53040 * 109.31414 * 54.65654 * 11 10 9 13 13 C 1.53040 * 109.53409 * 298.63121 * 12 11 10 14 14 H 1.08995 * 109.50248 * 301.40950 * 13 12 11 15 15 C 1.50700 * 109.52296 * 181.33379 * 13 12 11 16 16 O 1.21281 * 120.00225 * 240.14898 * 15 13 12 17 17 N 1.34778 * 120.00463 * 60.14608 * 15 13 12 18 18 C 1.46495 * 120.00539 * 180.02562 * 17 15 13 19 19 C 1.52998 * 109.47321 * 180.02562 * 18 17 15 20 20 N 1.46496 * 109.47044 * 180.02562 * 19 18 17 21 21 C 1.36938 * 120.00161 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99615 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00385 * 179.97438 * 21 20 19 24 24 N 1.31613 * 119.99777 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99928 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47212 * 90.00151 * 25 23 21 27 27 H 1.48507 * 109.46749 * 209.99932 * 25 23 21 28 28 H 1.48497 * 109.47542 * 329.99772 * 25 23 21 29 29 C 1.46924 * 120.63354 * 354.73268 * 9 7 4 30 30 H 1.09001 * 109.47148 * 60.00554 * 1 2 3 31 31 H 1.08998 * 109.46853 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47210 * 299.99994 * 1 2 3 33 33 H 1.08999 * 109.47210 * 240.00006 * 2 1 3 34 34 H 1.08995 * 109.47476 * 119.99679 * 2 1 3 35 35 H 1.08999 * 109.47186 * 59.99991 * 3 2 1 36 36 H 1.09001 * 109.46770 * 299.99677 * 3 2 1 37 37 H 1.09000 * 109.47016 * 173.59416 * 6 4 3 38 38 H 1.09006 * 109.47302 * 293.59002 * 6 4 3 39 39 H 1.08995 * 109.47675 * 53.59355 * 6 4 3 40 40 H 1.09004 * 109.52893 * 6.53399 * 10 9 7 41 41 H 1.09004 * 109.67539 * 246.22951 * 10 9 7 42 42 H 1.08997 * 109.50222 * 294.70233 * 11 10 9 43 43 H 1.09001 * 109.49727 * 174.60345 * 11 10 9 44 44 H 1.09003 * 109.46223 * 178.61229 * 12 11 10 45 45 H 1.08994 * 109.46205 * 58.65547 * 12 11 10 46 46 H 0.97006 * 119.99482 * 0.02562 * 17 15 13 47 47 H 1.09005 * 109.47248 * 299.99982 * 18 17 15 48 48 H 1.09003 * 109.46968 * 59.99986 * 18 17 15 49 49 H 1.09007 * 109.47044 * 299.99604 * 19 18 17 50 50 H 1.08994 * 109.47357 * 59.99356 * 19 18 17 51 51 H 0.96999 * 120.00456 * 359.97438 * 20 19 18 52 52 H 0.97002 * 119.99738 * 180.02562 * 24 23 21 53 53 H 1.08996 * 109.59025 * 113.81773 * 29 9 7 54 54 H 1.09005 * 109.58109 * 353.53306 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8426 6 6 4.0805 0.8328 -1.3064 7 6 4.0722 2.8580 0.1244 8 8 3.3193 3.7881 -0.0732 9 7 5.3580 3.0903 0.4548 10 6 5.8966 4.4603 0.4715 11 6 6.5369 4.7239 1.8379 12 6 7.5756 3.6380 2.1281 13 6 6.8885 2.2713 2.1723 14 1 6.1157 2.2772 2.9409 15 6 7.9060 1.2061 2.4904 16 8 8.1037 0.3027 1.7058 17 7 8.5963 1.2574 3.6468 18 6 9.5858 0.2223 3.9558 19 6 10.2204 0.5135 5.3172 20 7 11.2104 -0.5214 5.6258 21 6 11.9119 -0.4692 6.8008 22 1 11.7356 0.3352 7.4996 23 6 12.8495 -1.4500 7.0935 24 7 13.0639 -2.4304 6.2421 25 14 13.8068 -1.3783 8.6960 26 1 13.0676 -2.1213 9.7479 27 1 15.1440 -1.9945 8.5016 28 1 13.9702 0.0378 9.1122 29 6 6.2522 1.9799 0.8096 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 5.1645 0.9358 -1.3564 38 1 3.8139 -0.2235 -1.3431 39 1 3.6270 1.3515 -2.1509 40 1 5.0881 5.1718 0.3034 41 1 6.6476 4.5689 -0.3111 42 1 5.7675 4.7068 2.6097 43 1 7.0231 5.6994 1.8297 44 1 8.0503 3.8371 3.0889 45 1 8.3314 3.6393 1.3427 46 1 8.4380 1.9798 4.2745 47 1 9.0964 -0.7513 3.9843 48 1 10.3591 0.2179 3.1875 49 1 10.7099 1.4871 5.2891 50 1 9.4471 0.5177 6.0852 51 1 11.3690 -1.2436 4.9980 52 1 13.7189 -3.1160 6.4468 53 1 7.0327 1.8838 0.0548 54 1 5.6804 1.0534 0.8639 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480607490.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:20 Heat of formation + Delta-G solvation = -112.038305 kcal Electronic energy + Delta-G solvation = -29848.244300 eV Core-core repulsion = 25818.142358 eV Total energy + Delta-G solvation = -4030.101942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.76851 -40.71727 -38.37392 -37.28253 -36.91131 -35.52838 -34.28197 -33.27503 -32.79063 -32.00373 -29.42089 -27.58365 -26.85796 -26.03738 -24.80710 -24.43277 -23.03204 -22.50343 -21.47615 -20.98315 -19.83773 -19.32476 -18.46459 -17.77119 -17.28766 -16.83487 -16.66040 -16.48592 -16.43972 -15.93179 -15.66947 -15.40213 -15.28352 -15.07882 -14.95689 -14.81981 -14.56170 -14.25360 -14.20105 -13.80486 -13.59921 -13.39109 -13.16664 -13.06272 -13.03205 -12.81898 -12.66296 -12.59241 -12.49072 -12.26205 -12.09033 -12.07634 -11.94878 -11.86453 -11.85293 -11.73452 -11.69470 -11.42144 -10.98412 -10.84634 -10.66661 -10.12560 -9.73581 -9.05417 -7.96447 -5.27415 1.49117 1.51096 1.52622 1.58842 1.59498 1.78998 2.21273 2.58669 3.34779 3.38011 3.56087 3.68917 3.74466 3.76176 3.94642 4.01490 4.03428 4.10721 4.19995 4.21559 4.24813 4.28773 4.30348 4.35070 4.47675 4.52937 4.60963 4.63101 4.74887 4.80262 4.83076 4.84953 4.89003 4.90457 4.98506 4.99601 5.04328 5.09115 5.11176 5.15545 5.19645 5.28669 5.31276 5.39600 5.40617 5.46795 5.50161 5.50473 6.24639 6.29222 6.52783 7.08926 7.21649 7.31052 8.03579 8.25730 9.27067 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.001872 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.312057 B =14957.658395 C =16018.743188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.094 4.094 4 C -0.112 4.112 5 H 0.107 0.893 6 C -0.141 4.141 7 C 0.519 3.481 8 O -0.579 6.579 9 N -0.608 5.608 10 C 0.101 3.899 11 C -0.122 4.122 12 C -0.110 4.110 13 C -0.112 4.112 14 H 0.119 0.881 15 C 0.520 3.480 16 O -0.580 6.580 17 N -0.708 5.708 18 C 0.128 3.872 19 C 0.148 3.852 20 N -0.747 5.747 21 C -0.248 4.248 22 H 0.083 0.917 23 C -0.077 4.077 24 N -0.970 5.970 25 Si 0.978 3.022 26 H -0.287 1.287 27 H -0.297 1.297 28 H -0.266 1.266 29 C 0.128 3.872 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.416 0.584 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.037 0.963 50 H 0.036 0.964 51 H 0.374 0.626 52 H 0.252 0.748 53 H 0.076 0.924 54 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.921 13.449 -13.421 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.132 4.132 4 C -0.132 4.132 5 H 0.125 0.875 6 C -0.199 4.199 7 C 0.308 3.692 8 O -0.459 6.459 9 N -0.340 5.340 10 C -0.020 4.020 11 C -0.160 4.160 12 C -0.148 4.148 13 C -0.134 4.134 14 H 0.137 0.863 15 C 0.307 3.693 16 O -0.459 6.459 17 N -0.361 5.361 18 C 0.003 3.997 19 C 0.021 3.979 20 N -0.390 5.390 21 C -0.379 4.379 22 H 0.101 0.899 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.806 3.194 26 H -0.214 1.214 27 H -0.224 1.224 28 H -0.191 1.191 29 C 0.004 3.996 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.253 0.747 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.055 0.945 50 H 0.054 0.946 51 H 0.206 0.794 52 H 0.061 0.939 53 H 0.094 0.906 54 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.120 13.405 -13.917 29.371 hybrid contribution 0.838 -0.278 0.846 1.223 sum -21.282 13.128 -13.070 28.216 Atomic orbital electron populations 1.21768 0.95517 1.02037 1.01733 1.21585 0.96241 0.95425 1.02847 1.21387 0.92065 0.97621 1.02170 1.21429 0.97836 0.92125 1.01859 0.87540 1.21804 1.01271 1.02140 0.94637 1.21126 0.81003 0.92118 0.74907 1.90659 1.55965 1.47013 1.52244 1.48232 1.10085 1.08396 1.67267 1.21816 0.98893 0.82640 0.98695 1.21842 0.98285 0.99655 0.96193 1.21571 0.98005 0.91119 1.04105 1.21638 0.97138 0.94557 1.00023 0.86277 1.20878 0.81556 0.86277 0.80599 1.90720 1.67944 1.37970 1.49287 1.45739 1.40010 1.29042 1.21287 1.21137 0.90866 0.91159 0.96506 1.20861 0.91335 0.92294 0.93412 1.42422 1.45531 1.29319 1.21765 1.19645 1.14379 1.07480 0.96402 0.89926 1.25651 1.01631 0.97543 1.02097 1.69828 1.38571 1.15500 1.38098 0.85082 0.77323 0.77946 0.79023 1.21370 1.22372 1.19065 1.21540 0.93770 0.89325 0.94924 0.92830 0.91937 0.93031 0.90856 0.91483 0.92724 0.92287 0.92094 0.89552 0.92434 0.90142 0.90443 0.91174 0.88186 0.89125 0.91154 0.74660 0.92788 0.92747 0.94464 0.94570 0.79442 0.93935 0.90603 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 71.98 0.71 -1.05 16 2 C -0.12 -1.48 5.69 30.60 0.17 -1.30 16 3 C -0.09 -1.47 4.01 30.60 0.12 -1.35 16 4 C -0.11 -1.70 1.87 -11.54 -0.02 -1.72 16 5 H 0.11 1.39 6.58 -2.39 -0.02 1.37 16 6 C -0.14 -1.86 8.54 71.98 0.61 -1.24 16 7 C 0.52 10.39 6.90 87.66 0.60 10.99 16 8 O -0.58 -15.68 15.53 -3.06 -0.05 -15.73 16 9 N -0.61 -9.99 2.98 -818.19 -2.44 -12.43 16 10 C 0.10 1.43 6.45 86.30 0.56 1.99 16 11 C -0.12 -1.22 6.08 30.67 0.19 -1.03 16 12 C -0.11 -1.22 5.08 30.62 0.16 -1.07 16 13 C -0.11 -1.62 2.68 -11.46 -0.03 -1.65 16 14 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 15 C 0.52 11.74 7.16 87.66 0.63 12.37 16 16 O -0.58 -18.09 15.92 -3.03 -0.05 -18.14 16 17 N -0.71 -15.66 5.44 -463.06 -2.52 -18.19 16 18 C 0.13 4.00 5.79 86.38 0.50 4.50 16 19 C 0.15 5.29 6.37 86.38 0.55 5.84 16 20 N -0.75 -36.75 5.60 -343.46 -1.92 -38.67 16 21 C -0.25 -13.37 9.99 84.03 0.84 -12.53 16 22 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 23 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 24 N -0.97 -58.84 13.06 21.65 0.28 -58.56 16 25 Si 0.98 44.96 29.55 68.60 2.03 46.99 16 26 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 27 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 29 C 0.13 2.01 4.00 86.36 0.35 2.36 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.77 6.71 -2.39 -0.02 0.76 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16 37 H 0.06 0.83 7.06 -2.39 -0.02 0.82 16 38 H 0.09 0.90 6.89 -2.38 -0.02 0.88 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 1.39 7.02 -2.38 -0.02 1.37 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.09 0.78 7.54 -2.39 -0.02 0.77 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.42 6.51 7.89 -92.70 -0.73 5.78 16 47 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 48 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 50 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.37 19.95 7.67 -92.71 -0.71 19.24 16 52 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 53 H 0.08 1.34 7.96 -2.39 -0.02 1.32 16 54 H 0.10 1.51 5.31 -2.38 -0.01 1.49 16 Total: -1.00 -72.68 422.40 1.18 -71.51 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -0.56 Total: 31.98 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 6.41 Total: 11.24 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -6.60 Total: -127.85 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -0.10 Total: -33.86 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -72.68 1.18 -71.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480607490.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.531 kcal (2) G-P(sol) polarization free energy of solvation -72.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds