Wall clock time and date at job start Tue Mar 31 2020 22:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47190 * 2 1 4 4 C 1.53004 * 109.46854 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47280 * 54.99908 * 4 3 2 6 6 C 1.53003 * 109.46936 * 294.99799 * 4 3 2 7 7 C 1.50701 * 109.47220 * 174.99744 * 4 3 2 8 8 O 1.21279 * 119.99545 * 34.68743 * 7 4 3 9 9 N 1.34773 * 120.00289 * 214.68887 * 7 4 3 10 10 C 1.46923 * 120.62997 * 354.60223 * 9 7 4 11 11 C 1.53188 * 108.77980 * 233.58757 * 10 9 7 12 12 C 1.53046 * 109.33645 * 305.38461 * 11 10 9 13 13 C 1.53037 * 109.53986 * 61.31260 * 12 11 10 14 14 H 1.09003 * 109.49575 * 58.65460 * 13 12 11 15 15 C 1.50704 * 109.49521 * 178.71260 * 13 12 11 16 16 O 1.21279 * 119.99518 * 119.93406 * 15 13 12 17 17 N 1.34767 * 120.00184 * 299.94047 * 15 13 12 18 18 C 1.46508 * 119.99945 * 180.02562 * 17 15 13 19 19 C 1.53003 * 109.47204 * 179.97438 * 18 17 15 20 20 N 1.46494 * 109.47067 * 179.97438 * 19 18 17 21 21 C 1.36937 * 119.99880 * 180.02562 * 20 19 18 22 22 H 1.07994 * 120.00078 * 359.72008 * 21 20 19 23 23 C 1.38814 * 119.99695 * 180.02562 * 21 20 19 24 24 N 1.31609 * 120.00355 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99663 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.46936 * 89.99704 * 25 23 21 27 27 H 1.48494 * 109.47140 * 209.99706 * 25 23 21 28 28 H 1.48497 * 109.46986 * 329.99685 * 25 23 21 29 29 C 1.46931 * 120.63088 * 174.58387 * 9 7 4 30 30 H 1.08996 * 109.47226 * 300.00449 * 1 2 3 31 31 H 1.09003 * 109.46574 * 59.99881 * 1 2 3 32 32 H 1.08991 * 109.47164 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47226 * 239.99551 * 2 1 3 34 34 H 1.09003 * 109.46574 * 120.00119 * 2 1 3 35 35 H 1.08996 * 109.47716 * 60.00107 * 3 2 1 36 36 H 1.08995 * 109.47167 * 299.99477 * 3 2 1 37 37 H 1.08993 * 109.47123 * 305.04440 * 6 4 3 38 38 H 1.08997 * 109.46925 * 65.05375 * 6 4 3 39 39 H 1.09008 * 109.46623 * 185.04796 * 6 4 3 40 40 H 1.08998 * 109.58613 * 353.37990 * 10 9 7 41 41 H 1.09007 * 109.58566 * 113.65774 * 10 9 7 42 42 H 1.09002 * 109.49864 * 65.31244 * 11 10 9 43 43 H 1.08996 * 109.49894 * 185.38143 * 11 10 9 44 44 H 1.09005 * 109.42858 * 301.30718 * 12 11 10 45 45 H 1.09001 * 109.48064 * 181.35139 * 12 11 10 46 46 H 0.96997 * 120.00377 * 359.97438 * 17 15 13 47 47 H 1.08996 * 109.47332 * 59.99733 * 18 17 15 48 48 H 1.09005 * 109.46582 * 299.99566 * 18 17 15 49 49 H 1.09009 * 109.46787 * 59.99615 * 19 18 17 50 50 H 1.09000 * 109.46920 * 300.00320 * 19 18 17 51 51 H 0.97005 * 120.00106 * 0.02562 * 20 19 18 52 52 H 0.97005 * 120.00098 * 179.97438 * 24 23 21 53 53 H 1.08991 * 109.58487 * 6.62153 * 29 9 7 54 54 H 1.09004 * 109.58013 * 246.19955 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9338 0.8528 -0.8409 6 6 4.0794 0.8329 1.3084 7 6 4.0726 2.8577 -0.1232 8 8 3.4602 3.7662 0.3969 9 7 5.2023 3.1139 -0.8120 10 6 6.0182 2.0154 -1.3471 11 6 7.4598 2.1888 -0.8591 12 6 7.9588 3.5850 -1.2386 13 6 7.0871 4.6427 -0.5578 14 1 7.1244 4.5042 0.5227 15 6 7.5987 6.0166 -0.9068 16 8 6.8786 6.8029 -1.4849 17 7 8.8562 6.3714 -0.5766 18 6 9.3532 7.7073 -0.9154 19 6 10.7977 7.8517 -0.4322 20 7 11.2949 9.1873 -0.7715 21 6 12.5727 9.5478 -0.4361 22 1 13.2124 8.8491 0.0825 23 6 13.0436 10.8135 -0.7571 24 7 12.2623 11.6669 -1.3843 25 14 14.7866 11.3056 -0.2990 26 1 15.7083 10.9525 -1.4084 27 1 14.8403 12.7698 -0.0577 28 1 15.1964 10.5855 0.9333 29 6 5.6413 4.4971 -1.0424 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6768 1.9564 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 3.6439 1.3677 2.1523 38 1 3.7918 -0.2173 1.3560 39 1 5.1658 0.9143 1.3482 40 1 5.6248 1.0623 -0.9936 41 1 5.9936 2.0392 -2.4366 42 1 7.4937 2.0730 0.2242 43 1 8.0949 1.4357 -1.3255 44 1 7.9020 3.7088 -2.3201 45 1 8.9926 3.7023 -0.9136 46 1 9.4319 5.7427 -0.1141 47 1 8.7314 8.4600 -0.4309 48 1 9.3157 7.8456 -1.9960 49 1 11.4198 7.0989 -0.9164 50 1 10.8349 7.7134 0.6484 51 1 10.7190 9.8163 -1.2337 52 1 12.5913 12.5516 -1.6083 53 1 4.9993 5.1813 -0.4878 54 1 5.5880 4.7247 -2.1071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480607491.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:24 Heat of formation + Delta-G solvation = -113.042003 kcal Electronic energy + Delta-G solvation = -29557.871490 eV Core-core repulsion = 25527.726024 eV Total energy + Delta-G solvation = -4030.145466 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.76966 -40.76328 -38.39088 -37.31871 -36.92453 -35.56879 -34.30260 -33.12032 -32.83259 -32.06279 -29.49034 -27.58715 -26.86948 -26.06076 -25.04520 -24.00081 -23.08075 -22.55217 -21.72516 -20.94328 -19.66571 -19.34091 -18.58319 -17.91274 -17.12095 -16.86860 -16.73731 -16.50139 -16.35456 -15.99980 -15.71420 -15.36336 -15.25960 -15.09366 -14.91242 -14.83436 -14.57432 -14.32598 -14.18291 -13.77183 -13.70434 -13.39517 -13.09950 -13.08734 -13.05082 -12.80445 -12.67892 -12.62787 -12.52686 -12.24455 -12.09431 -12.04293 -11.95816 -11.88667 -11.86639 -11.67290 -11.62233 -11.38896 -10.99895 -10.93620 -10.62389 -10.19520 -9.72557 -9.07718 -7.97556 -5.29224 1.48111 1.50636 1.52724 1.55685 1.59054 1.75632 2.20729 2.57783 3.36937 3.38559 3.52656 3.71939 3.76233 3.79274 3.96074 3.98870 4.03876 4.07620 4.17108 4.19572 4.20064 4.30381 4.35041 4.37498 4.52092 4.56140 4.62882 4.64123 4.75190 4.77506 4.81613 4.86518 4.91487 4.95049 5.00350 5.01936 5.07393 5.10204 5.11536 5.13376 5.24481 5.29916 5.33367 5.37630 5.43692 5.46376 5.48207 5.50785 6.22837 6.37399 6.47499 7.12192 7.17399 7.29213 8.00989 8.23815 9.26107 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033992 B = 0.001595 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.528880 B =17545.239363 C =17894.504553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.103 4.103 4 C -0.102 4.102 5 H 0.123 0.877 6 C -0.139 4.139 7 C 0.510 3.490 8 O -0.592 6.592 9 N -0.609 5.609 10 C 0.092 3.908 11 C -0.125 4.125 12 C -0.111 4.111 13 C -0.105 4.105 14 H 0.112 0.888 15 C 0.515 3.485 16 O -0.588 6.588 17 N -0.706 5.706 18 C 0.127 3.873 19 C 0.150 3.850 20 N -0.748 5.748 21 C -0.249 4.249 22 H 0.084 0.916 23 C -0.076 4.076 24 N -0.971 5.971 25 Si 0.979 3.021 26 H -0.285 1.285 27 H -0.297 1.297 28 H -0.265 1.265 29 C 0.134 3.866 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.418 0.582 47 H 0.048 0.952 48 H 0.054 0.946 49 H 0.041 0.959 50 H 0.036 0.964 51 H 0.373 0.627 52 H 0.252 0.748 53 H 0.061 0.939 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.430 -35.184 2.385 38.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.154 4.154 3 C -0.141 4.141 4 C -0.123 4.123 5 H 0.141 0.859 6 C -0.196 4.196 7 C 0.300 3.700 8 O -0.472 6.472 9 N -0.341 5.341 10 C -0.029 4.029 11 C -0.163 4.163 12 C -0.149 4.149 13 C -0.128 4.128 14 H 0.130 0.870 15 C 0.302 3.698 16 O -0.468 6.468 17 N -0.358 5.358 18 C 0.002 3.998 19 C 0.023 3.977 20 N -0.391 5.391 21 C -0.381 4.381 22 H 0.102 0.898 23 C -0.268 4.268 24 N -0.621 5.621 25 Si 0.808 3.192 26 H -0.212 1.212 27 H -0.224 1.224 28 H -0.190 1.190 29 C 0.010 3.990 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.136 0.864 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.255 0.745 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.059 0.941 50 H 0.054 0.946 51 H 0.205 0.795 52 H 0.061 0.939 53 H 0.080 0.920 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.075 -34.200 2.331 38.297 hybrid contribution 0.672 1.594 0.074 1.732 sum -16.403 -32.606 2.405 36.579 Atomic orbital electron populations 1.21795 0.96087 1.02107 1.01414 1.21545 0.95744 0.94751 1.03390 1.21471 0.92712 0.98340 1.01620 1.21447 0.97247 0.90900 1.02719 0.85928 1.21796 1.01679 1.02158 0.94016 1.21553 0.79637 0.92472 0.76325 1.90689 1.58714 1.49162 1.48646 1.48276 1.24293 1.07080 1.54426 1.22242 0.91045 0.89743 0.99845 1.21926 0.95352 0.96224 1.02815 1.21616 0.99097 0.93527 1.00677 1.21590 0.96275 0.91270 1.03620 0.86996 1.21065 0.81196 0.89768 0.77737 1.90718 1.57571 1.54931 1.43539 1.45704 1.14227 1.15859 1.60053 1.21156 0.94686 0.84219 0.99747 1.20849 0.91289 0.87625 0.97945 1.42435 1.13409 1.12543 1.70721 1.19666 0.90402 0.97688 1.30327 0.89784 1.25673 1.02575 0.96804 1.01779 1.69839 1.37689 1.07167 1.47441 0.85058 0.79306 0.76677 0.78194 1.21169 1.22405 1.18988 1.21072 0.93504 0.83555 1.00858 0.93441 0.93305 0.91548 0.90427 0.90434 0.93095 0.93257 0.93739 0.88590 0.91164 0.86444 0.90008 0.90468 0.86990 0.91266 0.89079 0.74490 0.93316 0.92732 0.94078 0.94580 0.79544 0.93935 0.92039 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.91 71.98 0.71 -0.70 16 2 C -0.12 -0.90 5.69 30.59 0.17 -0.72 16 3 C -0.10 -1.39 4.26 30.59 0.13 -1.26 16 4 C -0.10 -1.13 1.92 -11.54 -0.02 -1.16 16 5 H 0.12 0.60 6.19 -2.39 -0.01 0.58 16 6 C -0.14 -1.11 8.70 71.98 0.63 -0.48 16 7 C 0.51 10.36 6.69 87.66 0.59 10.94 16 8 O -0.59 -18.49 15.78 -3.03 -0.05 -18.54 16 9 N -0.61 -10.12 2.97 -818.93 -2.43 -12.56 16 10 C 0.09 0.64 6.15 86.36 0.53 1.17 16 11 C -0.13 -0.66 6.08 30.67 0.19 -0.47 16 12 C -0.11 -1.22 5.08 30.62 0.16 -1.07 16 13 C -0.11 -1.98 2.67 -11.46 -0.03 -2.01 16 14 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 15 C 0.52 14.29 7.16 87.66 0.63 14.92 16 16 O -0.59 -22.38 15.92 -3.03 -0.05 -22.42 16 17 N -0.71 -18.02 5.44 -463.05 -2.52 -20.54 16 18 C 0.13 4.36 5.79 86.38 0.50 4.86 16 19 C 0.15 5.65 6.37 86.38 0.55 6.20 16 20 N -0.75 -38.09 5.60 -343.45 -1.92 -40.01 16 21 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 22 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 23 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 24 N -0.97 -60.16 13.06 21.65 0.28 -59.88 16 25 Si 0.98 45.62 29.55 68.60 2.03 47.64 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 28 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 29 C 0.13 3.09 5.07 86.36 0.44 3.52 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.08 0.43 6.68 -2.39 -0.02 0.42 16 35 H 0.05 0.92 8.01 -2.39 -0.02 0.90 16 36 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.10 0.30 6.82 -2.39 -0.02 0.29 16 39 H 0.07 0.42 8.11 -2.38 -0.02 0.40 16 40 H 0.12 0.18 5.51 -2.39 -0.01 0.17 16 41 H 0.08 0.47 8.14 -2.38 -0.02 0.46 16 42 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.09 0.77 7.53 -2.39 -0.02 0.75 16 46 H 0.42 7.53 7.88 -92.71 -0.73 6.80 16 47 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 49 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 50 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.37 20.68 7.67 -92.70 -0.71 19.97 16 52 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 53 H 0.06 1.89 7.00 -2.39 -0.02 1.88 16 54 H 0.07 1.68 7.96 -2.38 -0.02 1.66 16 Total: -1.00 -81.33 424.31 1.25 -80.08 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -0.56 Total: 29.30 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 6.47 Total: 16.93 kcal Atomic # 7 Polarization: -126.40 SS G_CDS: -6.60 Total: -132.99 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.10 Total: -40.96 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -81.33 1.25 -80.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480607491.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.967 kcal (2) G-P(sol) polarization free energy of solvation -81.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds