Wall clock time and date at job start Tue Mar 31 2020 22:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47405 * 2 1 4 4 C 1.53010 * 109.47158 * 240.00173 * 2 1 3 5 5 C 1.50703 * 109.47261 * 120.00420 * 2 1 3 6 6 O 1.21273 * 119.99931 * 359.97438 * 5 2 1 7 7 N 1.34775 * 120.00072 * 179.97438 * 5 2 1 8 8 C 1.46499 * 120.00181 * 179.97438 * 7 5 2 9 9 C 1.50700 * 109.47257 * 179.97438 * 8 7 5 10 10 O 1.21283 * 119.99803 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.27849 * 9 8 7 12 12 C 1.46921 * 120.63392 * 359.43977 * 11 9 8 13 13 C 1.53624 * 108.54016 * 126.36873 * 12 11 9 14 14 C 1.53041 * 109.23819 * 54.86424 * 13 12 11 15 15 C 1.53037 * 109.53606 * 298.50541 * 14 13 12 16 16 H 1.09007 * 109.52683 * 301.39603 * 15 14 13 17 17 C 1.52998 * 109.49828 * 181.32143 * 15 14 13 18 18 C 1.53005 * 109.47391 * 175.16322 * 17 15 14 19 19 N 1.46493 * 109.47208 * 179.97438 * 18 17 15 20 20 C 1.36938 * 120.00051 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00211 * 0.02562 * 20 19 18 22 22 C 1.38815 * 120.00113 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00097 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99978 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47280 * 60.00038 * 24 22 20 26 26 H 1.48498 * 109.47009 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46987 * 300.00266 * 24 22 20 28 28 C 1.46924 * 120.62813 * 179.72946 * 11 9 8 29 29 H 1.09007 * 109.47129 * 300.00179 * 1 2 3 30 30 H 1.08998 * 109.47500 * 59.99486 * 1 2 3 31 31 H 1.09000 * 109.47686 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47135 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46756 * 300.00413 * 3 2 1 34 34 H 1.08998 * 109.46853 * 60.00368 * 3 2 1 35 35 H 1.09000 * 109.46705 * 300.00458 * 4 2 1 36 36 H 1.08998 * 109.46636 * 59.99812 * 4 2 1 37 37 H 1.08991 * 109.46973 * 180.02562 * 4 2 1 38 38 H 0.97002 * 120.00040 * 359.97438 * 7 5 2 39 39 H 1.09009 * 109.46700 * 59.99666 * 8 7 5 40 40 H 1.08998 * 109.46827 * 300.00240 * 8 7 5 41 41 H 1.09000 * 109.59076 * 246.20663 * 12 11 9 42 42 H 1.09000 * 109.58577 * 6.63206 * 12 11 9 43 43 H 1.08990 * 109.63928 * 294.86618 * 13 12 11 44 44 H 1.09006 * 109.45894 * 174.74079 * 13 12 11 45 45 H 1.09003 * 109.46117 * 178.48816 * 14 13 12 46 46 H 1.08995 * 109.46288 * 58.52798 * 14 13 12 47 47 H 1.09001 * 109.47326 * 295.16308 * 17 15 14 48 48 H 1.09005 * 109.47084 * 55.16123 * 17 15 14 49 49 H 1.08997 * 109.46896 * 299.99754 * 18 17 15 50 50 H 1.08994 * 109.46906 * 59.99439 * 18 17 15 51 51 H 0.97005 * 120.00528 * 359.97438 * 19 18 17 52 52 H 0.97000 * 120.00236 * 179.97438 * 23 22 20 53 53 H 1.09006 * 109.58932 * 353.36359 * 28 11 9 54 54 H 1.08998 * 109.59450 * 113.65039 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 8 1.2442 -1.1710 2.0289 7 7 3.3574 -0.8341 1.4434 8 6 3.8457 -1.5243 2.6398 9 6 5.3528 -1.5255 2.6391 10 8 5.9591 -1.0018 1.7286 11 7 6.0266 -2.1139 3.6472 12 6 5.3061 -2.7475 4.7598 13 6 5.8082 -4.1918 4.9075 14 6 7.3301 -4.1826 5.0688 15 6 7.9734 -3.5748 3.8203 16 1 7.6851 -4.1541 2.9431 17 6 9.4960 -3.5961 3.9685 18 6 10.1416 -3.1005 2.6729 19 7 11.5995 -3.1204 2.8150 20 6 12.3943 -2.7171 1.7755 21 1 11.9465 -2.3839 0.8509 22 6 13.7758 -2.7354 1.9103 23 7 14.3217 -3.1410 3.0372 24 14 14.8600 -2.1845 0.4924 25 1 14.5515 -0.7722 0.1530 26 1 16.2870 -2.2989 0.8871 27 1 14.6035 -3.0452 -0.6903 28 6 7.4957 -2.1284 3.6574 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6765 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7216 -1.2491 38 1 3.9877 -0.4661 0.8046 39 1 3.4819 -2.5519 2.6404 40 1 3.4828 -1.0098 3.5296 41 1 5.4968 -2.1954 5.6802 42 1 4.2369 -2.7507 4.5481 43 1 5.5398 -4.7654 4.0205 44 1 5.3520 -4.6467 5.7868 45 1 7.6875 -5.2039 5.2009 46 1 7.5991 -3.5882 5.9420 47 1 9.7901 -2.9462 4.7927 48 1 9.8269 -4.6144 4.1730 49 1 9.8476 -3.7505 1.8488 50 1 9.8106 -2.0824 2.4685 51 1 12.0019 -3.4193 3.6455 52 1 15.2870 -3.1541 3.1313 53 1 7.8718 -1.7230 2.7180 54 1 7.8614 -1.5248 4.4881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481990701.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:31 Heat of formation + Delta-G solvation = -110.275927 kcal Electronic energy + Delta-G solvation = -30001.848762 eV Core-core repulsion = 25971.823242 eV Total energy + Delta-G solvation = -4030.025520 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.72732 -40.90610 -39.01354 -36.98926 -36.65393 -35.63978 -35.03228 -33.42745 -32.33032 -30.00811 -28.68652 -28.25870 -27.93386 -26.18308 -25.87545 -24.03991 -23.65962 -22.22654 -21.44969 -20.82197 -19.95983 -19.15194 -18.28117 -17.87217 -17.20867 -17.05033 -16.75146 -16.62964 -16.11822 -15.84011 -15.50633 -15.34146 -15.27962 -14.94894 -14.79381 -14.71603 -14.61161 -14.27230 -14.06644 -13.94191 -13.49982 -13.42722 -13.33347 -13.08699 -12.98484 -12.90213 -12.81297 -12.64342 -12.58883 -12.31736 -12.18564 -11.97738 -11.92498 -11.90116 -11.88315 -11.76326 -11.58437 -11.21164 -11.00028 -10.93042 -10.81790 -10.29606 -9.72863 -9.03391 -7.98245 -5.27587 1.37660 1.44572 1.48135 1.54466 1.54590 1.63078 2.25962 2.53642 3.26568 3.34489 3.56441 3.63722 3.80867 3.82961 3.88782 3.89860 4.05271 4.06817 4.18115 4.22427 4.30308 4.32730 4.40008 4.49433 4.52665 4.67733 4.69168 4.69565 4.71329 4.80879 4.84007 4.85977 4.90487 4.92294 4.94123 4.99536 5.03697 5.09796 5.17171 5.22372 5.25427 5.29620 5.31619 5.35406 5.37311 5.44226 5.46746 5.51516 6.24450 6.25726 6.38568 6.93373 7.09515 7.30274 8.05904 8.30345 9.24844 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.002153 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.156631 B =13004.863033 C =14903.720538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.523 3.477 6 O -0.574 6.574 7 N -0.717 5.717 8 C 0.106 3.894 9 C 0.506 3.494 10 O -0.577 6.577 11 N -0.601 5.601 12 C 0.096 3.904 13 C -0.129 4.129 14 C -0.113 4.113 15 C -0.084 4.084 16 H 0.063 0.937 17 C -0.105 4.105 18 C 0.150 3.850 19 N -0.747 5.747 20 C -0.252 4.252 21 H 0.070 0.930 22 C -0.075 4.075 23 N -0.967 5.967 24 Si 0.975 3.025 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.117 3.883 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.413 0.587 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.009 0.991 50 H 0.015 0.985 51 H 0.375 0.625 52 H 0.253 0.747 53 H 0.066 0.934 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.070 3.492 0.978 31.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.087 4.087 3 C -0.198 4.198 4 C -0.199 4.199 5 C 0.311 3.689 6 O -0.454 6.454 7 N -0.371 5.371 8 C -0.021 4.021 9 C 0.294 3.706 10 O -0.457 6.457 11 N -0.333 5.333 12 C -0.025 4.025 13 C -0.167 4.167 14 C -0.150 4.150 15 C -0.104 4.104 16 H 0.082 0.918 17 C -0.143 4.143 18 C 0.024 3.976 19 N -0.389 5.389 20 C -0.383 4.383 21 H 0.088 0.912 22 C -0.268 4.268 23 N -0.618 5.618 24 Si 0.803 3.197 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.006 4.006 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.252 0.748 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.109 0.891 42 H 0.125 0.875 43 H 0.082 0.918 44 H 0.122 0.878 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.027 0.973 50 H 0.033 0.967 51 H 0.207 0.793 52 H 0.062 0.938 53 H 0.085 0.915 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -31.271 3.494 0.924 31.479 hybrid contribution 1.699 0.190 -0.628 1.821 sum -29.572 3.684 0.296 29.802 Atomic orbital electron populations 1.21659 0.91467 1.02365 1.02735 1.20873 0.98283 0.97037 0.92485 1.21897 1.01443 0.92723 1.03736 1.21902 1.01426 1.00401 0.96121 1.21124 0.81199 0.78742 0.87822 1.90667 1.56020 1.50286 1.48396 1.45858 1.07738 1.58447 1.25097 1.21153 0.89364 1.00752 0.90835 1.20870 0.90489 0.77769 0.81478 1.90709 1.70652 1.47286 1.37072 1.48158 1.06895 1.55292 1.22983 1.22267 0.97269 0.93838 0.89134 1.21981 0.95221 0.95743 1.03717 1.21584 0.95488 1.01583 0.96377 1.21327 0.93643 0.95486 0.99918 0.91822 1.21600 0.94313 1.01625 0.96796 1.20848 0.83177 0.97021 0.96552 1.42578 1.01436 1.79238 1.15686 1.19578 0.88995 1.35189 0.94567 0.91228 1.25603 0.98013 1.03051 1.00085 1.69802 1.10208 1.55000 1.26749 0.85192 0.77513 0.78287 0.78664 1.20433 1.21653 1.20392 1.21661 0.78902 0.97227 1.02765 0.92901 0.89671 0.92980 0.92047 0.89251 0.92430 0.92536 0.89229 0.92086 0.74847 0.87166 0.86957 0.89068 0.87538 0.91848 0.87768 0.90970 0.90711 0.91545 0.91521 0.97288 0.96683 0.79291 0.93841 0.91529 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 7.76 71.98 0.56 -1.08 16 2 C -0.08 -1.15 0.87 -52.92 -0.05 -1.20 16 3 C -0.14 -1.55 8.37 71.98 0.60 -0.95 16 4 C -0.14 -1.61 8.37 71.99 0.60 -1.01 16 5 C 0.52 10.18 6.48 87.66 0.57 10.75 16 6 O -0.57 -14.61 15.98 -3.01 -0.05 -14.66 16 7 N -0.72 -13.25 5.31 -466.79 -2.48 -15.73 16 8 C 0.11 1.79 4.50 85.63 0.39 2.18 16 9 C 0.51 11.36 7.77 87.66 0.68 12.05 16 10 O -0.58 -17.77 15.08 -3.04 -0.05 -17.81 16 11 N -0.60 -11.85 2.97 -818.07 -2.43 -14.28 16 12 C 0.10 1.10 6.37 86.51 0.55 1.65 16 13 C -0.13 -1.48 6.10 30.82 0.19 -1.29 16 14 C -0.11 -1.86 5.16 30.62 0.16 -1.70 16 15 C -0.08 -2.00 2.34 -10.72 -0.03 -2.03 16 16 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 17 C -0.10 -3.27 4.80 30.60 0.15 -3.12 16 18 C 0.15 6.33 6.02 86.38 0.52 6.85 16 19 N -0.75 -39.75 5.60 -343.47 -1.92 -41.68 16 20 C -0.25 -14.74 9.99 84.03 0.84 -13.90 16 21 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 22 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 23 N -0.97 -60.21 13.06 21.65 0.28 -59.93 16 24 Si 0.98 47.35 29.55 68.60 2.03 49.37 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 28 C 0.12 2.92 5.32 86.36 0.46 3.38 16 29 H 0.05 0.79 8.10 -2.38 -0.02 0.77 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 32 H 0.06 0.71 7.57 -2.39 -0.02 0.69 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.74 7.56 -2.39 -0.02 0.72 16 38 H 0.41 7.78 6.27 -92.71 -0.58 7.20 16 39 H 0.11 1.62 7.70 -2.38 -0.02 1.61 16 40 H 0.11 1.59 7.93 -2.39 -0.02 1.57 16 41 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.11 0.79 5.93 -2.39 -0.01 0.78 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 49 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 50 H 0.02 0.66 6.70 -2.39 -0.02 0.64 16 51 H 0.38 20.80 7.67 -92.70 -0.71 20.09 16 52 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 53 H 0.07 2.14 5.72 -2.38 -0.01 2.13 16 54 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -76.47 422.12 1.63 -74.84 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.41 Total: 33.28 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 6.66 Total: 6.59 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -6.55 Total: -131.62 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.09 Total: -32.47 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.37 kcal Total: -76.47 1.63 -74.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481990701.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.431 kcal (2) G-P(sol) polarization free energy of solvation -76.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds