Wall clock time and date at job start Tue Mar 31 2020 23:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21284 * 120.00159 * 2 1 4 4 N 1.34776 * 120.00593 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00357 * 179.97438 * 4 2 1 6 6 H 1.08995 * 109.47051 * 35.00637 * 5 4 2 7 7 C 1.50704 * 109.47020 * 155.00501 * 5 4 2 8 8 O 1.21281 * 120.00102 * 21.25166 * 7 5 4 9 9 N 1.34773 * 120.00148 * 201.25544 * 7 5 4 10 10 C 1.46925 * 120.63279 * 174.53994 * 9 7 5 11 11 C 1.53194 * 108.77473 * 233.87724 * 10 9 7 12 12 C 1.53038 * 109.31784 * 305.36811 * 11 10 9 13 13 C 1.52996 * 109.46390 * 181.38143 * 12 11 10 14 14 C 1.53007 * 109.46716 * 64.93156 * 13 12 11 15 15 N 1.46500 * 109.46957 * 180.02562 * 14 13 12 16 16 C 1.36934 * 119.99968 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00032 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00091 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99650 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00301 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47035 * 90.00026 * 20 18 16 22 22 H 1.48496 * 109.47311 * 210.00195 * 20 18 16 23 23 H 1.48509 * 109.46828 * 330.00176 * 20 18 16 24 24 C 1.53038 * 109.53785 * 61.36089 * 12 11 10 25 25 C 1.46927 * 120.62879 * 354.81764 * 9 7 5 26 26 C 1.53004 * 109.46908 * 274.99846 * 5 4 2 27 27 C 1.53001 * 109.47486 * 305.56270 * 26 5 4 28 28 C 1.52995 * 109.46668 * 65.56756 * 26 5 4 29 29 H 1.09002 * 109.47200 * 270.00148 * 1 2 3 30 30 H 1.08994 * 109.47427 * 30.00476 * 1 2 3 31 31 H 1.09009 * 109.47159 * 150.00517 * 1 2 3 32 32 H 0.97006 * 119.99609 * 0.02562 * 4 2 1 33 33 H 1.08995 * 109.58612 * 353.66970 * 10 9 7 34 34 H 1.09000 * 109.58774 * 114.09382 * 10 9 7 35 35 H 1.08998 * 109.49594 * 185.40944 * 11 10 9 36 36 H 1.09004 * 109.49363 * 65.32058 * 11 10 9 37 37 H 1.08999 * 109.45485 * 301.34720 * 12 11 10 38 38 H 1.08999 * 109.47370 * 184.93101 * 13 12 11 39 39 H 1.09000 * 109.47084 * 304.93327 * 13 12 11 40 40 H 1.08999 * 109.47157 * 300.00076 * 14 13 12 41 41 H 1.08995 * 109.47522 * 59.99882 * 14 13 12 42 42 H 0.97003 * 120.00141 * 359.97438 * 15 14 13 43 43 H 0.97005 * 119.99667 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.49812 * 178.68842 * 24 12 11 45 45 H 1.09002 * 109.52519 * 58.60467 * 24 12 11 46 46 H 1.09003 * 109.58977 * 245.91092 * 25 9 7 47 47 H 1.09006 * 109.58600 * 6.18889 * 25 9 7 48 48 H 1.09003 * 109.46606 * 185.55806 * 26 5 4 49 49 H 1.08991 * 109.46938 * 60.00008 * 27 26 5 50 50 H 1.09001 * 109.46852 * 180.02562 * 27 26 5 51 51 H 1.08998 * 109.46694 * 300.00059 * 27 26 5 52 52 H 1.08997 * 109.47274 * 299.98910 * 28 26 5 53 53 H 1.09004 * 109.47603 * 59.99820 * 28 26 5 54 54 H 1.09002 * 109.47028 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0094 -0.3249 0.5888 7 6 4.1485 -2.4544 0.6010 8 8 3.4278 -3.4292 0.6363 9 7 5.3989 -2.5225 1.0993 10 6 5.8629 -3.7307 1.7948 11 6 6.3992 -3.3310 3.1730 12 6 7.4709 -2.2515 3.0056 13 6 8.0333 -1.8744 4.3776 14 6 8.7602 -3.0788 4.9793 15 7 9.2982 -2.7180 6.2933 16 6 9.9937 -3.6426 7.0257 17 1 10.1453 -4.6379 6.6350 18 6 10.5040 -3.3006 8.2706 19 7 10.3188 -2.0877 8.7470 20 14 11.4521 -4.5620 9.2701 21 1 12.8955 -4.4784 8.9315 22 1 11.2666 -4.2876 10.7177 23 1 10.9479 -5.9231 8.9557 24 6 6.8530 -1.0142 2.3503 25 6 6.3219 -1.3876 0.9628 26 6 4.1553 -1.0423 -1.4374 27 6 3.5341 -2.1456 -2.2963 28 6 3.7624 0.3248 -2.0007 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3634 -0.8901 -0.5138 32 1 1.6959 -2.0072 0.0005 33 1 5.0318 -4.4258 1.9135 34 1 6.6571 -4.2029 1.2165 35 1 6.8343 -4.2032 3.6609 36 1 5.5831 -2.9422 3.7821 37 1 8.2748 -2.6326 2.3760 38 1 8.7325 -1.0454 4.2683 39 1 7.2169 -1.5768 5.0356 40 1 8.0610 -3.9078 5.0885 41 1 9.5765 -3.3765 4.3213 42 1 9.1624 -1.8239 6.6441 43 1 10.6750 -1.8488 9.6171 44 1 7.6113 -0.2373 2.2527 45 1 6.0328 -0.6466 2.9670 46 1 7.1536 -1.6686 0.3166 47 1 5.7943 -0.5374 0.5302 48 1 5.2408 -1.1413 -1.4480 49 1 2.4487 -2.0466 -2.2856 50 1 3.8974 -2.0569 -3.3201 51 1 3.8140 -3.1195 -1.8948 52 1 2.6770 0.4239 -1.9902 53 1 4.2051 1.1109 -1.3888 54 1 4.1257 0.4139 -3.0246 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482007067.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:54 Heat of formation + Delta-G solvation = -103.251760 kcal Electronic energy + Delta-G solvation = -30708.300913 eV Core-core repulsion = 26678.579984 eV Total energy + Delta-G solvation = -4029.720929 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.01014 -40.50798 -39.07670 -37.11388 -36.93485 -35.11236 -34.20571 -32.99408 -32.25643 -30.86993 -30.05160 -28.16218 -27.92365 -26.47829 -24.73187 -24.14791 -22.75787 -22.13471 -21.58479 -20.71414 -20.20531 -19.14661 -18.57393 -17.80321 -17.31031 -17.09237 -16.68660 -16.31740 -16.19129 -15.76428 -15.51348 -15.34728 -15.28916 -15.02452 -14.86204 -14.63761 -14.44067 -14.31288 -14.14108 -13.74977 -13.36524 -13.31545 -13.21263 -13.16441 -13.04606 -12.85361 -12.80424 -12.52853 -12.40217 -12.27332 -12.20077 -12.13513 -12.04562 -11.98069 -11.80895 -11.64119 -11.33590 -11.30089 -10.94354 -10.93369 -10.77960 -10.11936 -9.71686 -9.00437 -7.96757 -5.25785 1.35453 1.46010 1.48178 1.56651 1.64197 1.75025 2.36004 2.54951 3.23828 3.36749 3.66712 3.69311 3.77375 3.80808 3.87345 3.94572 4.08617 4.13235 4.21134 4.29888 4.37650 4.40117 4.47472 4.53423 4.54276 4.59526 4.65481 4.66959 4.75840 4.78022 4.80611 4.88858 4.92110 4.95757 4.97488 5.04566 5.05867 5.08318 5.10170 5.17050 5.28095 5.29029 5.36293 5.40429 5.42546 5.48220 5.52820 5.55288 6.26227 6.27142 6.50701 6.95503 7.21789 7.31577 8.09283 8.31270 9.27023 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021961 B = 0.001957 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.684681 B =14301.356452 C =14536.801337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.508 3.492 3 O -0.578 6.578 4 N -0.709 5.709 5 C 0.132 3.868 6 H 0.104 0.896 7 C 0.515 3.485 8 O -0.568 6.568 9 N -0.602 5.602 10 C 0.117 3.883 11 C -0.126 4.126 12 C -0.073 4.073 13 C -0.108 4.108 14 C 0.150 3.850 15 N -0.751 5.751 16 C -0.246 4.246 17 H 0.076 0.924 18 C -0.080 4.080 19 N -0.971 5.971 20 Si 0.976 3.024 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.269 1.269 24 C -0.127 4.127 25 C 0.102 3.898 26 C -0.097 4.097 27 C -0.142 4.142 28 C -0.131 4.131 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.414 0.586 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.021 0.979 41 H 0.020 0.980 42 H 0.372 0.628 43 H 0.251 0.749 44 H 0.093 0.907 45 H 0.056 0.944 46 H 0.097 0.903 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.057 0.943 50 H 0.069 0.931 51 H 0.044 0.956 52 H 0.047 0.953 53 H 0.051 0.949 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.176 2.838 -26.989 32.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.298 3.702 3 O -0.457 6.457 4 N -0.363 5.363 5 C 0.023 3.977 6 H 0.122 0.878 7 C 0.303 3.697 8 O -0.447 6.447 9 N -0.334 5.334 10 C -0.005 4.005 11 C -0.164 4.164 12 C -0.092 4.092 13 C -0.146 4.146 14 C 0.024 3.976 15 N -0.393 5.393 16 C -0.378 4.378 17 H 0.094 0.906 18 C -0.272 4.272 19 N -0.622 5.622 20 Si 0.804 3.196 21 H -0.212 1.212 22 H -0.221 1.221 23 H -0.194 1.194 24 C -0.165 4.165 25 C -0.020 4.020 26 C -0.117 4.117 27 C -0.199 4.199 28 C -0.188 4.188 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.252 0.748 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.204 0.796 43 H 0.060 0.940 44 H 0.112 0.888 45 H 0.075 0.925 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.113 0.887 49 H 0.077 0.923 50 H 0.088 0.912 51 H 0.063 0.937 52 H 0.067 0.933 53 H 0.070 0.930 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.065 2.874 -26.947 32.569 hybrid contribution 0.429 -0.599 1.411 1.592 sum -17.636 2.274 -25.536 31.117 Atomic orbital electron populations 1.21909 0.88477 1.06241 1.06002 1.21428 0.92040 0.82574 0.74195 1.90725 1.71548 1.32461 1.51015 1.45902 1.05430 1.09991 1.74987 1.20900 0.82881 0.95454 0.98426 0.87788 1.20752 0.81525 0.89825 0.77565 1.90662 1.56681 1.38576 1.58809 1.48165 1.12534 1.17382 1.55348 1.21618 0.99991 0.86547 0.92345 1.21970 0.98296 0.99752 0.96430 1.21009 0.97379 0.95595 0.95220 1.21634 0.99071 0.97488 0.96438 1.20899 0.94836 0.96341 0.85518 1.42665 1.65423 1.13209 1.18027 1.19661 1.25461 0.94181 0.98494 0.90630 1.25631 1.03417 0.98815 0.99317 1.69826 1.52336 1.20300 1.19726 0.85107 0.78412 0.78626 0.77430 1.21204 1.22146 1.19382 1.21953 1.01031 0.97787 0.95723 1.22100 0.93728 0.88419 0.97760 1.21511 1.01332 0.97189 0.91685 1.21765 1.01235 0.97034 0.99868 1.21783 1.01536 0.94870 1.00651 0.87740 0.88354 0.87890 0.74813 0.90301 0.89580 0.90548 0.93044 0.89629 0.91993 0.93261 0.96065 0.96183 0.79628 0.93982 0.88848 0.92494 0.88463 0.88252 0.88727 0.92347 0.91202 0.93677 0.93346 0.92954 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.30 71.23 0.73 -0.64 16 2 C 0.51 8.27 6.53 87.66 0.57 8.84 16 3 O -0.58 -13.56 14.24 -3.04 -0.04 -13.60 16 4 N -0.71 -10.94 4.00 -446.10 -1.78 -12.72 16 5 C 0.13 2.19 1.49 44.25 0.07 2.26 16 6 H 0.10 1.90 6.17 -2.39 -0.01 1.89 16 7 C 0.52 10.29 6.05 87.66 0.53 10.82 16 8 O -0.57 -14.37 15.04 -3.03 -0.05 -14.41 16 9 N -0.60 -10.79 2.97 -818.89 -2.43 -13.22 16 10 C 0.12 2.28 6.42 86.36 0.55 2.83 16 11 C -0.13 -2.83 5.14 30.67 0.16 -2.67 16 12 C -0.07 -1.58 2.15 -10.77 -0.02 -1.60 16 13 C -0.11 -3.30 4.80 30.60 0.15 -3.15 16 14 C 0.15 5.90 6.02 86.38 0.52 6.42 16 15 N -0.75 -39.02 5.60 -343.45 -1.92 -40.94 16 16 C -0.25 -14.01 9.99 84.03 0.84 -13.18 16 17 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 18 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 19 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 20 Si 0.98 46.60 29.55 68.60 2.03 48.63 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C -0.13 -2.17 5.36 30.67 0.16 -2.01 16 25 C 0.10 1.37 5.59 86.36 0.48 1.86 16 26 C -0.10 -1.31 2.42 -10.79 -0.03 -1.34 16 27 C -0.14 -1.87 8.79 71.98 0.63 -1.23 16 28 C -0.13 -1.92 7.81 71.98 0.56 -1.36 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.41 5.80 7.75 -92.70 -0.72 5.08 16 33 H 0.08 1.76 7.04 -2.39 -0.02 1.75 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.85 6.50 -2.39 -0.02 1.83 16 36 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.02 0.84 6.53 -2.39 -0.02 0.82 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.37 20.59 7.67 -92.71 -0.71 19.87 16 43 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 44 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.10 1.12 5.00 -2.38 -0.01 1.11 16 48 H 0.09 1.05 6.96 -2.39 -0.02 1.04 16 49 H 0.06 0.76 7.46 -2.39 -0.02 0.74 16 50 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.04 0.73 7.14 -2.39 -0.02 0.71 16 52 H 0.05 0.83 5.63 -2.39 -0.01 0.82 16 53 H 0.05 0.88 7.88 -2.38 -0.02 0.86 16 54 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -73.87 412.02 1.93 -71.95 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: -0.53 Total: 32.81 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 6.38 Total: 1.65 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -5.86 Total: -127.02 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.09 Total: -28.02 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -73.87 1.93 -71.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482007067.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.307 kcal (2) G-P(sol) polarization free energy of solvation -73.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds