Wall clock time and date at job start Tue Mar 31 2020 22:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46841 * 2 1 4 4 C 1.53007 * 109.46884 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46792 * 55.00523 * 4 3 2 6 6 C 1.52995 * 109.47083 * 295.00537 * 4 3 2 7 7 C 1.50696 * 109.47218 * 175.00118 * 4 3 2 8 8 O 1.21287 * 119.99720 * 0.02562 * 7 4 3 9 9 N 1.34772 * 120.00453 * 180.02562 * 7 4 3 10 10 C 1.46497 * 120.00294 * 180.02562 * 9 7 4 11 11 C 1.52999 * 109.47101 * 174.90774 * 10 9 7 12 12 N 1.46903 * 110.01407 * 304.00510 * 11 10 9 13 13 C 1.46897 * 111.00052 * 303.38462 * 12 11 10 14 14 C 1.50707 * 109.47332 * 176.91316 * 13 12 11 15 15 O 1.21294 * 119.99398 * 359.97438 * 14 13 12 16 16 N 1.34768 * 120.00265 * 180.02562 * 14 13 12 17 17 C 1.37094 * 120.00001 * 179.97438 * 16 14 13 18 18 H 1.08005 * 120.00318 * 359.97438 * 17 16 14 19 19 C 1.38951 * 120.00418 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99663 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00576 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46882 * 90.00114 * 21 19 17 23 23 H 1.48500 * 109.47385 * 210.00326 * 21 19 17 24 24 H 1.48500 * 109.47180 * 330.00308 * 21 19 17 25 25 C 1.54269 * 110.03351 * 182.56878 * 11 10 9 26 26 C 1.54889 * 104.19559 * 217.10114 * 25 11 10 27 27 C 1.54890 * 102.74614 * 37.94100 * 26 25 11 28 28 C 1.53872 * 110.03574 * 65.39909 * 11 10 9 29 29 H 1.08994 * 109.47318 * 59.99691 * 1 2 3 30 30 H 1.09008 * 109.46941 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46833 * 299.99209 * 1 2 3 32 32 H 1.09010 * 109.47094 * 240.00612 * 2 1 3 33 33 H 1.08995 * 109.47805 * 120.00903 * 2 1 3 34 34 H 1.08997 * 109.46762 * 60.00747 * 3 2 1 35 35 H 1.08994 * 109.47417 * 300.00248 * 3 2 1 36 36 H 1.09000 * 109.47294 * 299.99677 * 6 4 3 37 37 H 1.09008 * 109.46787 * 180.02562 * 6 4 3 38 38 H 1.08997 * 109.47398 * 60.00358 * 6 4 3 39 39 H 0.97003 * 119.99589 * 359.97438 * 9 7 4 40 40 H 1.09007 * 109.46876 * 294.90157 * 10 9 7 41 41 H 1.08994 * 109.47691 * 54.90233 * 10 9 7 42 42 H 1.00900 * 110.99703 * 67.33641 * 12 11 10 43 43 H 1.09002 * 109.47002 * 296.90580 * 13 12 11 44 44 H 1.08999 * 109.47392 * 56.91076 * 13 12 11 45 45 H 0.97000 * 120.00383 * 359.97438 * 16 14 13 46 46 H 0.97000 * 120.00172 * 179.97438 * 20 19 17 47 47 H 1.08999 * 110.48558 * 335.78143 * 25 11 10 48 48 H 1.08994 * 110.48864 * 98.41991 * 25 11 10 49 49 H 1.08997 * 110.75845 * 279.62405 * 26 25 11 50 50 H 1.09007 * 110.75315 * 156.25279 * 26 25 11 51 51 H 1.09000 * 110.48167 * 203.37822 * 27 26 25 52 52 H 1.08997 * 110.48558 * 80.73978 * 27 26 25 53 53 H 1.09002 * 110.02832 * 238.56780 * 28 11 10 54 54 H 1.08997 * 110.03315 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9329 0.8533 -0.8428 6 6 4.0805 0.8326 1.3063 7 6 4.0723 2.8579 -0.1244 8 8 3.2840 3.7763 -0.2038 9 7 5.3973 3.1033 -0.1470 10 6 5.8855 4.4793 -0.2667 11 6 7.4103 4.4922 -0.1408 12 7 7.8157 3.8619 1.1227 13 6 7.1846 4.5282 2.2697 14 6 7.5628 3.8090 3.5390 15 8 8.2864 2.8367 3.4924 16 7 7.0960 4.2455 4.7255 17 6 7.4397 3.5910 5.8801 18 1 8.0840 2.7252 5.8387 19 6 6.9589 4.0413 7.1035 20 7 6.1745 5.0944 7.1539 21 14 7.4265 3.1490 8.6766 22 1 8.6717 3.7400 9.2294 23 1 6.3301 3.2870 9.6686 24 1 7.6495 1.7107 8.3822 25 6 7.9332 5.9423 -0.2007 26 6 9.2593 5.8354 -0.9939 27 6 8.9294 4.7703 -2.0690 28 6 8.0437 3.7471 -1.3287 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 1.6766 1.9562 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.7176 1.4219 2.1484 37 1 5.1706 0.8331 1.3060 38 1 3.7173 -0.1911 1.3958 39 1 6.0276 2.3688 -0.0831 40 1 5.5977 4.8838 -1.2372 41 1 5.4504 5.0895 0.5246 42 1 7.6064 2.8749 1.1178 43 1 7.5261 5.5620 2.3224 44 1 6.1013 4.5090 2.1502 45 1 6.5170 5.0229 4.7627 46 1 5.8386 5.4086 8.0079 47 1 7.2245 6.5820 -0.7266 48 1 8.1191 6.3227 0.8037 49 1 10.0691 5.4951 -0.3486 50 1 9.5092 6.7891 -1.4589 51 1 9.8425 4.2954 -2.4280 52 1 8.3817 5.2207 -2.8967 53 1 8.6527 2.9183 -0.9676 54 1 7.2649 3.3766 -1.9952 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482213080.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:01 Heat of formation + Delta-G solvation = -125.171414 kcal Electronic energy + Delta-G solvation = -31071.105098 eV Core-core repulsion = 27040.433661 eV Total energy + Delta-G solvation = -4030.671436 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.49659 -40.39289 -39.57381 -36.96470 -36.09185 -35.74056 -34.58819 -33.26822 -32.89891 -30.19835 -29.67671 -28.04821 -27.55652 -26.38013 -25.42349 -24.23026 -22.22285 -21.62789 -20.90976 -20.80884 -20.04292 -19.84413 -18.42152 -17.92527 -17.19475 -16.87547 -16.79121 -16.42339 -16.31798 -15.93255 -15.76091 -15.69348 -15.16994 -15.12783 -14.88797 -14.64467 -14.18587 -14.07473 -13.93712 -13.79547 -13.52920 -13.46419 -13.22135 -13.09965 -12.84487 -12.78420 -12.43855 -12.32509 -12.21754 -12.18411 -12.09410 -11.91611 -11.87365 -11.80719 -11.77281 -11.68845 -11.51398 -11.43001 -11.33705 -10.78472 -10.35914 -10.17215 -10.03524 -9.39373 -8.47762 -5.96957 1.36851 1.40598 1.53477 1.57638 2.02048 2.11429 2.27786 2.87315 3.19252 3.43184 3.57023 3.57787 3.69991 3.78407 3.88275 3.91634 4.20537 4.25735 4.29586 4.31337 4.34049 4.36647 4.39276 4.47164 4.55186 4.59170 4.63481 4.72094 4.76362 4.84802 4.85848 4.89827 4.94141 4.98826 5.02653 5.09650 5.10958 5.14829 5.18357 5.26716 5.28313 5.30802 5.38858 5.39499 5.40841 5.48792 5.58182 5.88220 6.07801 6.37036 6.43630 6.56864 7.10383 7.16521 7.53444 8.07427 8.69698 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.006497 B = 0.003917 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4308.587259 B = 7146.876674 C =10598.601820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.097 4.097 4 C -0.102 4.102 5 H 0.126 0.874 6 C -0.144 4.144 7 C 0.512 3.488 8 O -0.583 6.583 9 N -0.718 5.718 10 C 0.094 3.906 11 C 0.106 3.894 12 N -0.651 5.651 13 C 0.062 3.938 14 C 0.441 3.559 15 O -0.617 6.617 16 N -0.573 5.573 17 C -0.332 4.332 18 H 0.082 0.918 19 C -0.014 4.014 20 N -0.922 5.922 21 Si 0.993 3.007 22 H -0.271 1.271 23 H -0.272 1.272 24 H -0.270 1.270 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.114 4.114 28 C -0.112 4.112 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.036 0.964 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.407 0.593 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.343 0.657 43 H 0.100 0.900 44 H 0.052 0.948 45 H 0.393 0.607 46 H 0.277 0.723 47 H 0.083 0.917 48 H 0.061 0.939 49 H 0.056 0.944 50 H 0.078 0.922 51 H 0.073 0.927 52 H 0.077 0.923 53 H 0.073 0.927 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 -4.943 -20.295 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.135 4.135 4 C -0.123 4.123 5 H 0.144 0.856 6 C -0.202 4.202 7 C 0.300 3.700 8 O -0.463 6.463 9 N -0.371 5.371 10 C -0.032 4.032 11 C 0.015 3.985 12 N -0.283 5.283 13 C -0.070 4.070 14 C 0.229 3.771 15 O -0.504 6.504 16 N -0.210 5.210 17 C -0.462 4.462 18 H 0.100 0.900 19 C -0.213 4.213 20 N -0.563 5.563 21 Si 0.817 3.183 22 H -0.196 1.196 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.153 4.153 26 C -0.153 4.153 27 C -0.152 4.152 28 C -0.150 4.150 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.244 0.756 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.163 0.837 43 H 0.118 0.882 44 H 0.070 0.930 45 H 0.226 0.774 46 H 0.086 0.914 47 H 0.101 0.899 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.096 0.904 51 H 0.091 0.909 52 H 0.095 0.905 53 H 0.091 0.909 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.275 -4.483 -20.162 20.912 hybrid contribution -0.878 -0.163 1.305 1.581 sum -4.153 -4.646 -18.857 19.860 Atomic orbital electron populations 1.21777 0.95654 1.02139 1.01570 1.21581 0.96153 0.95062 1.03050 1.21388 0.92395 0.97908 1.01858 1.21370 0.97694 0.91635 1.01602 0.85575 1.21829 1.01395 1.02190 0.94758 1.21278 0.82010 0.92318 0.74438 1.90673 1.56319 1.47981 1.51311 1.45954 1.07107 1.09573 1.74442 1.22131 0.95764 0.83336 1.01938 1.22033 0.89937 0.96743 0.89794 1.60452 1.60922 1.07071 0.99901 1.21559 0.97344 0.99260 0.88841 1.20709 0.84028 0.86821 0.85581 1.90482 1.41780 1.30715 1.87382 1.41943 1.44805 1.28867 1.05397 1.19678 1.29579 1.12065 0.84831 0.90015 1.26067 0.96035 0.97136 1.02096 1.69688 1.33692 1.24756 1.28155 0.84925 0.78113 0.78407 0.76898 1.19622 1.19714 1.19459 1.22466 0.98136 0.93622 1.01098 1.22389 0.96359 0.99510 0.97039 1.22283 0.99531 0.95849 0.97506 1.22257 0.99416 0.98752 0.94575 0.92745 0.91546 0.93572 0.90393 0.91251 0.93673 0.92161 0.94503 0.91932 0.89006 0.75597 0.90471 0.93086 0.83674 0.88213 0.93032 0.77357 0.91359 0.89868 0.92014 0.92476 0.90385 0.90856 0.90470 0.90864 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 71.98 0.71 -1.62 16 2 C -0.12 -1.86 5.69 30.59 0.17 -1.69 16 3 C -0.10 -2.03 4.03 30.60 0.12 -1.90 16 4 C -0.10 -2.01 2.72 -11.54 -0.03 -2.04 16 5 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 6 C -0.14 -2.98 8.84 71.98 0.64 -2.34 16 7 C 0.51 13.41 7.15 87.66 0.63 14.04 16 8 O -0.58 -20.14 15.91 -3.05 -0.05 -20.18 16 9 N -0.72 -16.11 4.94 -463.07 -2.29 -18.40 16 10 C 0.09 2.20 3.63 86.38 0.31 2.51 16 11 C 0.11 2.32 0.55 4.25 0.00 2.32 16 12 N -0.65 -19.07 5.62 -470.55 -2.64 -21.72 16 13 C 0.06 2.18 5.50 85.56 0.47 2.65 16 14 C 0.44 20.91 7.81 87.66 0.68 21.59 16 15 O -0.62 -33.17 15.71 -3.07 -0.05 -33.21 16 16 N -0.57 -29.83 5.29 -306.98 -1.62 -31.45 16 17 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 18 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 19 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 20 N -0.92 -50.65 13.05 21.66 0.28 -50.37 16 21 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 C -0.11 -2.40 5.86 31.67 0.19 -2.21 16 26 C -0.12 -2.11 6.91 31.89 0.22 -1.89 16 27 C -0.11 -1.73 6.83 31.67 0.22 -1.52 16 28 C -0.11 -1.94 5.74 31.32 0.18 -1.76 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.07 1.03 6.57 -2.39 -0.02 1.02 16 34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.35 7.95 -2.39 -0.02 1.33 16 36 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.27 7.56 -2.38 -0.02 1.26 16 38 H 0.09 1.50 6.57 -2.39 -0.02 1.48 16 39 H 0.41 7.73 6.57 -92.71 -0.61 7.12 16 40 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.05 1.45 6.56 -2.39 -0.02 1.43 16 42 H 0.34 10.30 7.03 -89.69 -0.63 9.67 16 43 H 0.10 3.30 6.32 -2.39 -0.02 3.28 16 44 H 0.05 1.78 6.21 -2.39 -0.01 1.77 16 45 H 0.39 19.91 7.90 -92.71 -0.73 19.18 16 46 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 47 H 0.08 1.49 7.85 -2.39 -0.02 1.47 16 48 H 0.06 1.51 6.07 -2.39 -0.01 1.49 16 49 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 51 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.07 1.38 7.88 -2.39 -0.02 1.36 16 54 H 0.08 1.17 7.55 -2.39 -0.02 1.15 16 Total: -1.00 -70.47 419.52 0.40 -70.08 By element: Atomic # 1 Polarization: 53.38 SS G_CDS: -1.06 Total: 52.32 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 5.80 Total: 7.78 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -6.27 Total: -121.93 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -0.10 Total: -53.40 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -70.47 0.40 -70.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482213080.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.096 kcal (2) G-P(sol) polarization free energy of solvation -70.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds