Wall clock time and date at job start Tue Mar 31 2020 22:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 119.99614 * 2 1 4 4 N 1.34771 * 120.00016 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99810 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47304 * 204.99896 * 5 4 2 7 7 C 1.53006 * 109.47215 * 300.00525 * 6 5 4 8 8 C 1.53004 * 109.46756 * 299.99814 * 7 6 5 9 9 C 1.50700 * 109.47007 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00133 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00028 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99947 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46925 * 180.02562 * 12 11 9 14 14 H 1.08995 * 109.47216 * 295.00133 * 13 12 11 15 15 N 1.46498 * 109.47065 * 55.00022 * 13 12 11 16 16 C 1.36943 * 119.99752 * 204.72207 * 15 13 12 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 13 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 13 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47294 * 90.00155 * 20 18 16 22 22 H 1.48499 * 109.47218 * 210.00015 * 20 18 16 23 23 H 1.48496 * 109.47166 * 329.99846 * 20 18 16 24 24 C 1.52999 * 109.47083 * 175.00128 * 13 12 11 25 25 C 1.52997 * 109.47278 * 179.97438 * 24 13 12 26 26 C 1.52999 * 109.47156 * 299.99894 * 24 13 12 27 27 C 1.52998 * 109.47575 * 59.99894 * 8 7 6 28 28 C 1.53004 * 109.46937 * 84.99917 * 5 4 2 29 29 H 1.08992 * 109.47139 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47417 * 300.00461 * 1 2 3 31 31 H 1.09002 * 109.47041 * 59.99996 * 1 2 3 32 32 H 0.96993 * 120.00071 * 359.97438 * 4 2 1 33 33 H 1.08996 * 109.47330 * 325.00255 * 5 4 2 34 34 H 1.08999 * 109.47628 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.47330 * 60.00104 * 6 5 4 36 36 H 1.08997 * 109.47200 * 180.02562 * 7 6 5 37 37 H 1.08991 * 109.47298 * 59.99387 * 7 6 5 38 38 H 1.08999 * 109.47047 * 299.99555 * 8 7 6 39 39 H 0.96997 * 119.99994 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.46993 * 60.00870 * 12 11 9 41 41 H 1.08999 * 109.47017 * 300.00291 * 12 11 9 42 42 H 0.97001 * 120.00384 * 25.00562 * 15 13 12 43 43 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.47054 * 59.99725 * 24 13 12 45 45 H 1.08996 * 109.47253 * 180.02562 * 25 24 13 46 46 H 1.08995 * 109.47275 * 300.00159 * 25 24 13 47 47 H 1.09003 * 109.47146 * 59.99973 * 25 24 13 48 48 H 1.09003 * 109.46926 * 60.00284 * 26 24 13 49 49 H 1.08998 * 109.47115 * 179.97438 * 26 24 13 50 50 H 1.08994 * 109.47213 * 300.00018 * 26 24 13 51 51 H 1.09001 * 109.46707 * 59.99620 * 27 8 7 52 52 H 1.08996 * 109.47454 * 179.97438 * 27 8 7 53 53 H 1.08999 * 109.47047 * 179.97438 * 28 5 4 54 54 H 1.08992 * 109.47460 * 299.99995 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1557 -2.4748 -0.6089 7 6 3.6460 -3.6559 0.2194 8 6 4.1565 -3.5292 1.6562 9 6 3.6550 -4.6929 2.4719 10 8 2.9576 -5.5399 1.9552 11 7 3.9816 -4.7923 3.7757 12 6 3.4936 -5.9233 4.5689 13 6 4.0042 -5.7966 6.0056 14 1 5.0905 -5.8857 6.0143 15 7 3.6168 -4.4922 6.5483 16 6 4.3416 -3.9314 7.5659 17 1 5.2013 -4.4488 7.9654 18 6 3.9711 -2.6981 8.0841 19 7 2.9230 -2.0678 7.5976 20 14 4.9601 -1.9328 9.4717 21 1 6.0421 -1.0900 8.9022 22 1 4.0681 -1.0928 10.3107 23 1 5.5565 -3.0072 10.3055 24 6 3.3945 -6.9073 6.8633 25 6 3.9056 -6.7811 8.2998 26 6 1.8697 -6.7823 6.8511 27 6 3.6468 -2.2215 2.2652 28 6 4.1564 -1.0404 1.4367 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6959 -2.0071 0.0013 33 1 4.0090 -0.3257 -0.5901 34 1 5.2457 -2.4750 -0.6090 35 1 3.7920 -2.5651 -1.6325 36 1 4.0096 -4.5875 -0.2141 37 1 2.5561 -3.6559 0.2198 38 1 5.2465 -3.5293 1.6558 39 1 4.5391 -4.1147 4.1891 40 1 3.8565 -6.8549 4.1348 41 1 2.4036 -5.9231 4.5696 42 1 2.8446 -4.0275 6.1896 43 1 2.6644 -1.2058 7.9594 44 1 3.6827 -7.8779 6.4594 45 1 3.4716 -7.5726 8.9107 46 1 4.9919 -6.8704 8.3082 47 1 3.6178 -5.8105 8.7039 48 1 1.5060 -6.8726 5.8275 49 1 1.4354 -7.5738 7.4618 50 1 1.5815 -5.8118 7.2549 51 1 2.5568 -2.2215 2.2655 52 1 4.0101 -2.1315 3.2888 53 1 5.2464 -1.0408 1.4364 54 1 3.7932 -0.1088 1.8706 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482574241.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:46 Heat of formation + Delta-G solvation = -115.610513 kcal Electronic energy + Delta-G solvation = -31330.942413 eV Core-core repulsion = 27300.685568 eV Total energy + Delta-G solvation = -4030.256845 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.54173 -40.56307 -39.07357 -38.34608 -35.26504 -34.78429 -34.64511 -32.15458 -31.77922 -31.70970 -29.90874 -29.10029 -27.73778 -25.73922 -24.62096 -23.65789 -23.18049 -22.10931 -21.26109 -20.28844 -19.99167 -19.21139 -18.08712 -17.97749 -17.19700 -16.94763 -16.67575 -16.49021 -16.09393 -15.81841 -15.58257 -15.26867 -15.02951 -14.95506 -14.69814 -14.60505 -14.44795 -13.88265 -13.73383 -13.58131 -13.49910 -13.30118 -13.14267 -12.98748 -12.91718 -12.88976 -12.78471 -12.64086 -12.43133 -12.15188 -12.12164 -11.94207 -11.88719 -11.86040 -11.48595 -11.37049 -11.23372 -11.17932 -10.91221 -10.85496 -10.57602 -10.02212 -9.90572 -8.91310 -7.85188 -5.10293 1.49250 1.51807 1.57518 1.66798 1.71975 2.33810 2.39933 2.61359 3.48955 3.63689 3.68721 3.77118 3.94025 3.96244 3.97808 4.11323 4.17777 4.26018 4.30846 4.36773 4.41806 4.46063 4.48644 4.49839 4.52888 4.64823 4.68797 4.72567 4.79702 4.89766 4.95912 4.98728 5.00323 5.09876 5.13560 5.14163 5.15626 5.23562 5.25047 5.31777 5.33675 5.34809 5.40073 5.59400 5.60293 5.61398 5.67151 5.83526 6.35060 6.59617 6.67724 7.28790 7.32961 7.44123 8.16558 8.41490 9.37411 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.003278 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.161657 B = 8539.922000 C =10049.876687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.503 3.497 3 O -0.601 6.601 4 N -0.714 5.714 5 C 0.142 3.858 6 C -0.113 4.113 7 C -0.092 4.092 8 C -0.097 4.097 9 C 0.511 3.489 10 O -0.585 6.585 11 N -0.712 5.712 12 C 0.119 3.881 13 C 0.169 3.831 14 H 0.055 0.945 15 N -0.719 5.719 16 C -0.210 4.210 17 H 0.077 0.923 18 C -0.068 4.068 19 N -0.965 5.965 20 Si 0.951 3.049 21 H -0.292 1.292 22 H -0.307 1.307 23 H -0.272 1.272 24 C -0.105 4.105 25 C -0.136 4.136 26 C -0.134 4.134 27 C -0.099 4.099 28 C -0.122 4.122 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.410 0.590 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.116 0.884 39 H 0.408 0.592 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.373 0.627 43 H 0.244 0.756 44 H 0.078 0.922 45 H 0.049 0.951 46 H 0.045 0.955 47 H 0.050 0.950 48 H 0.052 0.948 49 H 0.055 0.945 50 H 0.034 0.966 51 H 0.053 0.947 52 H 0.056 0.944 53 H 0.090 0.910 54 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 -5.204 -16.504 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.292 3.708 3 O -0.482 6.482 4 N -0.366 5.366 5 C 0.038 3.962 6 C -0.150 4.150 7 C -0.131 4.131 8 C -0.118 4.118 9 C 0.299 3.701 10 O -0.466 6.466 11 N -0.363 5.363 12 C -0.005 4.005 13 C 0.060 3.940 14 H 0.073 0.927 15 N -0.360 5.360 16 C -0.342 4.342 17 H 0.095 0.905 18 C -0.260 4.260 19 N -0.616 5.616 20 Si 0.783 3.217 21 H -0.220 1.220 22 H -0.235 1.235 23 H -0.197 1.197 24 C -0.126 4.126 25 C -0.194 4.194 26 C -0.192 4.192 27 C -0.138 4.138 28 C -0.161 4.161 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.248 0.752 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.244 0.756 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.205 0.795 43 H 0.053 0.947 44 H 0.096 0.904 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.053 0.947 51 H 0.071 0.929 52 H 0.074 0.926 53 H 0.109 0.891 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.792 -5.080 -16.714 17.487 hybrid contribution -0.033 0.937 1.545 1.807 sum 0.760 -4.142 -15.169 15.743 Atomic orbital electron populations 1.21888 0.89157 1.05991 1.05736 1.21470 0.92065 0.83145 0.74154 1.90688 1.72010 1.33152 1.52395 1.46288 1.07535 1.08816 1.74006 1.20995 0.79906 0.99468 0.95854 1.21798 1.02730 0.91151 0.99363 1.21292 1.00877 0.99001 0.91884 1.21356 1.03074 0.91607 0.95735 1.21135 0.79566 0.87210 0.82190 1.90631 1.39999 1.43956 1.71971 1.46068 1.52885 1.27386 1.09921 1.21609 0.98831 0.89204 0.90884 1.20674 0.97329 0.86217 0.89731 0.92709 1.42476 1.34024 1.18240 1.41210 1.19438 1.06623 0.99212 1.08887 0.90472 1.25237 0.99433 0.98905 1.02431 1.69789 1.29223 1.16314 1.46322 0.85461 0.77699 0.78380 0.80169 1.22011 1.23474 1.19737 1.21586 0.95770 0.98664 0.96613 1.21754 0.99802 1.01530 0.96292 1.21705 0.95842 1.00764 1.00854 1.21343 1.00558 0.92975 0.98875 1.21848 1.01971 0.96953 0.95301 0.88249 0.88891 0.87568 0.75238 0.90277 0.88441 0.89376 0.90615 0.92045 0.86600 0.75559 0.90704 0.92712 0.79476 0.94656 0.90377 0.93172 0.93615 0.93047 0.92897 0.92617 0.94712 0.92860 0.92553 0.89131 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 10.39 71.24 0.74 -1.78 16 2 C 0.50 11.62 7.90 87.66 0.69 12.31 16 3 O -0.60 -19.61 16.76 -3.04 -0.05 -19.67 16 4 N -0.71 -13.49 4.23 -442.54 -1.87 -15.36 16 5 C 0.14 2.69 2.78 44.99 0.13 2.81 16 6 C -0.11 -1.52 5.61 30.59 0.17 -1.35 16 7 C -0.09 -1.63 4.32 30.60 0.13 -1.50 16 8 C -0.10 -2.09 2.52 -11.54 -0.03 -2.12 16 9 C 0.51 14.87 7.16 87.66 0.63 15.50 16 10 O -0.58 -20.19 15.98 -3.03 -0.05 -20.24 16 11 N -0.71 -21.62 5.28 -463.06 -2.45 -24.07 16 12 C 0.12 3.72 5.02 86.38 0.43 4.16 16 13 C 0.17 5.74 2.35 44.99 0.11 5.85 16 14 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 15 N -0.72 -30.91 3.68 -322.94 -1.19 -32.10 16 16 C -0.21 -10.17 7.55 84.03 0.63 -9.54 16 17 H 0.08 3.64 7.38 -2.91 -0.02 3.61 16 18 C -0.07 -3.58 5.50 84.86 0.47 -3.12 16 19 N -0.96 -55.46 13.06 21.65 0.28 -55.18 16 20 Si 0.95 44.04 29.55 68.60 2.03 46.07 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.31 -14.85 7.11 99.48 0.71 -14.15 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C -0.10 -3.26 2.80 -10.80 -0.03 -3.29 16 25 C -0.14 -4.54 8.26 71.98 0.59 -3.95 16 26 C -0.13 -4.28 8.69 71.98 0.63 -3.66 16 27 C -0.10 -2.44 4.94 30.60 0.15 -2.29 16 28 C -0.12 -2.73 5.60 30.60 0.17 -2.55 16 29 H 0.10 0.99 7.91 -2.39 -0.02 0.97 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.41 6.23 6.70 -92.71 -0.62 5.61 16 33 H 0.08 1.69 7.58 -2.39 -0.02 1.67 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 37 H 0.06 1.16 6.46 -2.39 -0.02 1.15 16 38 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.41 12.82 7.56 -92.71 -0.70 12.12 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.05 1.87 6.17 -2.39 -0.01 1.85 16 42 H 0.37 18.03 7.80 -92.71 -0.72 17.31 16 43 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 44 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.05 2.10 5.99 -2.39 -0.01 2.09 16 48 H 0.05 1.58 6.32 -2.39 -0.02 1.57 16 49 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.03 1.34 7.60 -2.39 -0.02 1.32 16 51 H 0.05 1.44 7.60 -2.39 -0.02 1.42 16 52 H 0.06 1.65 7.56 -2.39 -0.02 1.63 16 53 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 54 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -67.35 416.12 1.18 -66.18 By element: Atomic # 1 Polarization: 50.02 SS G_CDS: -1.14 Total: 48.88 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 5.61 Total: 5.48 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -5.22 Total: -126.71 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.10 Total: -39.90 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -67.35 1.18 -66.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482574241.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.433 kcal (2) G-P(sol) polarization free energy of solvation -67.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds