Wall clock time and date at job start Tue Mar 31 2020 22:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47279 * 2 1 4 4 C 1.53000 * 109.47279 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46837 * 305.00042 * 4 3 2 6 6 C 1.53005 * 109.47223 * 64.99711 * 4 3 2 7 7 C 1.50702 * 109.47324 * 185.00210 * 4 3 2 8 8 O 1.21276 * 119.99865 * 345.68015 * 7 4 3 9 9 N 1.34773 * 119.99924 * 165.68930 * 7 4 3 10 10 C 1.46930 * 120.63341 * 5.58704 * 9 7 4 11 11 C 1.52760 * 109.01009 * 233.58821 * 10 9 7 12 12 C 1.53039 * 109.38375 * 305.58808 * 11 10 9 13 13 C 1.53043 * 109.53622 * 61.24168 * 12 11 10 14 14 C 1.46928 * 120.63037 * 185.87615 * 9 7 4 15 15 H 1.09003 * 109.58290 * 246.14873 * 14 9 7 16 16 C 1.52996 * 109.58415 * 6.42900 * 14 9 7 17 17 N 1.46904 * 109.46848 * 178.47194 * 16 14 9 18 18 C 1.46902 * 110.99926 * 185.07874 * 17 16 14 19 19 C 1.50699 * 109.47510 * 179.97438 * 18 17 16 20 20 O 1.21292 * 119.99720 * 359.97438 * 19 18 17 21 21 N 1.34773 * 120.00457 * 179.97438 * 19 18 17 22 22 C 1.37095 * 120.00081 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99929 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00120 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99647 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00208 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47193 * 90.00082 * 26 24 22 28 28 H 1.48502 * 109.46922 * 209.99841 * 26 24 22 29 29 H 1.48497 * 109.46813 * 329.99839 * 26 24 22 30 30 H 1.09001 * 109.46860 * 300.00246 * 1 2 3 31 31 H 1.09003 * 109.46685 * 59.99916 * 1 2 3 32 32 H 1.08997 * 109.47182 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46860 * 239.99754 * 2 1 3 34 34 H 1.08995 * 109.46920 * 120.00307 * 2 1 3 35 35 H 1.09001 * 109.47376 * 60.00069 * 3 2 1 36 36 H 1.09003 * 109.47331 * 299.99688 * 3 2 1 37 37 H 1.09005 * 109.46489 * 64.34586 * 6 4 3 38 38 H 1.08994 * 109.47380 * 184.34074 * 6 4 3 39 39 H 1.09001 * 109.47032 * 304.34629 * 6 4 3 40 40 H 1.08996 * 109.58459 * 353.42240 * 10 9 7 41 41 H 1.08995 * 109.58556 * 113.84714 * 10 9 7 42 42 H 1.08993 * 109.56650 * 185.54987 * 11 10 9 43 43 H 1.09001 * 109.38587 * 65.51198 * 11 10 9 44 44 H 1.09001 * 109.46103 * 301.21783 * 12 11 10 45 45 H 1.09005 * 109.44650 * 181.25198 * 12 11 10 46 46 H 1.09005 * 109.49442 * 178.68495 * 13 12 11 47 47 H 1.08999 * 109.52690 * 58.60263 * 13 12 11 48 48 H 1.08997 * 109.47679 * 298.47018 * 16 14 9 49 49 H 1.09001 * 109.47304 * 58.47247 * 16 14 9 50 50 H 1.00895 * 111.00090 * 61.12703 * 17 16 14 51 51 H 1.09007 * 109.47294 * 299.99942 * 18 17 16 52 52 H 1.09002 * 109.47439 * 59.99849 * 18 17 16 53 53 H 0.97001 * 119.99580 * 0.02562 * 21 19 18 54 54 H 0.97007 * 119.99975 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8528 0.8410 6 6 4.0795 0.8329 -1.3083 7 6 4.0725 2.8578 0.1232 8 8 3.3151 3.7880 -0.0557 9 7 5.3635 3.0899 0.4327 10 6 6.3208 1.9797 0.5322 11 6 7.0186 2.0445 1.8895 12 6 7.6411 3.4302 2.0750 13 6 6.5410 4.4938 2.0442 14 6 5.8391 4.4574 0.6831 15 1 6.5413 4.7487 -0.0981 16 6 4.6505 5.4206 0.6896 17 7 5.1245 6.7812 0.9764 18 6 3.9975 7.7140 1.1100 19 6 4.5214 9.0961 1.4038 20 8 5.7161 9.2854 1.4937 21 7 3.6626 10.1219 1.5668 22 6 4.1393 11.3793 1.8335 23 1 5.2031 11.5478 1.9135 24 6 3.2539 12.4368 2.0021 25 7 1.9594 12.2314 1.9062 26 14 3.9035 14.1502 2.3649 27 1 4.1347 14.8726 1.0882 28 1 2.9103 14.8935 3.1812 29 1 5.1817 14.0467 3.1136 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.7807 1.4652 -2.1444 38 1 5.1667 0.7620 -1.2768 39 1 3.6539 -0.1625 -1.4352 40 1 5.7914 1.0314 0.4399 41 1 7.0629 2.0650 -0.2615 42 1 7.7996 1.2857 1.9350 43 1 6.2899 1.8644 2.6799 44 1 8.3520 3.6195 1.2707 45 1 8.1583 3.4703 3.0337 46 1 6.9824 5.4783 2.1997 47 1 5.8164 4.2913 2.8328 48 1 4.1635 5.4035 -0.2853 49 1 3.9390 5.1145 1.4566 50 1 5.7718 7.0952 0.2691 51 1 3.4278 7.7310 0.1808 52 1 3.3519 7.3895 1.9261 53 1 2.7072 9.9705 1.4953 54 1 1.3412 12.9697 2.0235 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484615193.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:36 Heat of formation + Delta-G solvation = -103.384999 kcal Electronic energy + Delta-G solvation = -30504.637955 eV Core-core repulsion = 26474.911248 eV Total energy + Delta-G solvation = -4029.726707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.79565 -40.17196 -38.70911 -37.22798 -36.56615 -35.83142 -34.05610 -33.34055 -32.98245 -31.96334 -29.03006 -27.57325 -27.21173 -26.00372 -24.98949 -24.37239 -22.79501 -21.98942 -21.21899 -21.03129 -20.00421 -19.71428 -18.28752 -17.50953 -17.28140 -16.78561 -16.66189 -16.44575 -16.00331 -15.88034 -15.45781 -15.41963 -15.29277 -15.16226 -14.87413 -14.51915 -14.29286 -14.22673 -13.97820 -13.75292 -13.52905 -13.39336 -13.31076 -13.16189 -12.95767 -12.90817 -12.73187 -12.61617 -12.44102 -12.13062 -12.12484 -12.03076 -11.87592 -11.83189 -11.68512 -11.58897 -11.53049 -11.38817 -11.36323 -10.45783 -10.31952 -10.04824 -9.58453 -9.15932 -8.48555 -5.98251 1.36776 1.39932 1.53848 1.64146 1.91950 2.00491 2.28076 2.92467 3.17746 3.43088 3.59175 3.75631 3.82374 3.89144 3.94657 4.03002 4.10796 4.25877 4.27289 4.30339 4.31673 4.37485 4.38412 4.44670 4.51320 4.55479 4.62468 4.68725 4.76111 4.79726 4.88267 4.91402 4.95696 5.00862 5.02396 5.05597 5.10517 5.14790 5.22406 5.25782 5.29316 5.31582 5.38362 5.45853 5.48396 5.51528 5.63854 5.83488 6.03769 6.35753 6.48327 6.56454 7.08904 7.23477 7.51696 8.06301 8.69189 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.002277 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.526915 B =12296.139355 C =14004.606993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.099 4.099 4 C -0.103 4.103 5 H 0.117 0.883 6 C -0.144 4.144 7 C 0.505 3.495 8 O -0.575 6.575 9 N -0.605 5.605 10 C 0.099 3.901 11 C -0.131 4.131 12 C -0.119 4.119 13 C -0.115 4.115 14 C 0.154 3.846 15 H 0.073 0.927 16 C 0.081 3.919 17 N -0.678 5.678 18 C 0.072 3.928 19 C 0.441 3.559 20 O -0.618 6.618 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.081 0.919 24 C -0.016 4.016 25 N -0.922 5.922 26 Si 0.998 3.002 27 H -0.269 1.269 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.048 0.952 48 H 0.047 0.953 49 H 0.057 0.943 50 H 0.342 0.658 51 H 0.055 0.945 52 H 0.093 0.907 53 H 0.395 0.605 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.523 -32.122 -4.488 32.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.137 4.137 4 C -0.124 4.124 5 H 0.134 0.866 6 C -0.201 4.201 7 C 0.295 3.705 8 O -0.455 6.455 9 N -0.338 5.338 10 C -0.022 4.022 11 C -0.169 4.169 12 C -0.157 4.157 13 C -0.154 4.154 14 C 0.050 3.950 15 H 0.091 0.909 16 C -0.047 4.047 17 N -0.312 5.312 18 C -0.061 4.061 19 C 0.229 3.771 20 O -0.505 6.505 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.099 0.901 24 C -0.215 4.215 25 N -0.563 5.563 26 Si 0.821 3.179 27 H -0.195 1.195 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.160 0.840 51 H 0.073 0.927 52 H 0.111 0.889 53 H 0.229 0.771 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.806 -31.516 -3.831 32.110 hybrid contribution -0.867 1.561 -0.613 1.888 sum 3.939 -29.955 -4.444 30.538 Atomic orbital electron populations 1.21795 0.96144 1.02068 1.01379 1.21565 0.95719 0.94997 1.03235 1.21394 0.92914 0.97868 1.01568 1.21395 0.97129 0.91565 1.02336 0.86562 1.21930 1.02383 1.01841 0.93985 1.21456 0.81349 0.92575 0.75076 1.90731 1.57210 1.45904 1.51641 1.48311 1.09116 1.07656 1.68748 1.22111 0.92149 0.89433 0.98517 1.21861 1.00729 0.97485 0.96835 1.21555 0.97065 0.94380 1.02704 1.21758 0.98063 1.00275 0.95273 1.21081 0.94902 0.81109 0.97888 0.90928 1.22377 0.95280 0.86531 1.00536 1.60056 1.15538 1.01821 1.53809 1.21386 0.93629 0.89498 1.01583 1.20697 0.86677 0.87072 0.82699 1.90468 1.17148 1.85367 1.57499 1.41945 1.08954 1.07404 1.62727 1.19708 0.94034 0.85232 1.47411 0.90071 1.26136 0.95155 1.03749 0.96501 1.69695 1.02166 1.34667 1.49810 0.84865 0.77978 0.76510 0.78583 1.19464 1.19451 1.19604 0.93546 0.93354 0.91493 0.90237 0.90804 0.93614 0.93083 0.93739 0.90268 0.88984 0.86780 0.89813 0.87920 0.92023 0.91170 0.91233 0.91516 0.93339 0.93508 0.92443 0.83999 0.92703 0.88921 0.77138 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.12 -1.27 5.69 30.59 0.17 -1.09 16 3 C -0.10 -1.65 4.00 30.59 0.12 -1.53 16 4 C -0.10 -1.42 1.86 -11.54 -0.02 -1.44 16 5 H 0.12 1.05 7.17 -2.39 -0.02 1.04 16 6 C -0.14 -1.34 8.70 71.98 0.63 -0.72 16 7 C 0.51 11.29 6.78 87.66 0.59 11.88 16 8 O -0.58 -18.16 11.64 -3.02 -0.04 -18.19 16 9 N -0.61 -11.60 2.98 -795.87 -2.37 -13.97 16 10 C 0.10 1.01 5.39 86.22 0.46 1.47 16 11 C -0.13 -1.33 6.06 30.53 0.19 -1.15 16 12 C -0.12 -1.85 5.89 30.62 0.18 -1.67 16 13 C -0.12 -2.72 5.12 30.67 0.16 -2.56 16 14 C 0.15 3.78 3.18 44.97 0.14 3.93 16 15 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 16 C 0.08 2.59 3.56 86.30 0.31 2.90 16 17 N -0.68 -25.05 5.42 -517.92 -2.81 -27.86 16 18 C 0.07 2.93 6.16 85.56 0.53 3.46 16 19 C 0.44 22.81 7.82 87.66 0.69 23.49 16 20 O -0.62 -36.03 15.78 -3.07 -0.05 -36.08 16 21 N -0.57 -31.54 5.29 -306.99 -1.62 -33.17 16 22 C -0.33 -19.85 9.68 84.04 0.81 -19.04 16 23 H 0.08 5.08 7.16 -2.91 -0.02 5.06 16 24 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 25 N -0.92 -51.99 13.05 21.66 0.28 -51.71 16 26 Si 1.00 44.32 29.55 68.60 2.03 46.35 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.63 6.47 -2.39 -0.02 0.61 16 34 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 1.05 8.09 -2.39 -0.02 1.03 16 37 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.08 0.48 6.07 -2.39 -0.01 0.46 16 39 H 0.09 0.49 6.37 -2.39 -0.02 0.48 16 40 H 0.11 0.59 4.61 -2.39 -0.01 0.58 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.07 1.91 7.78 -2.38 -0.02 1.90 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.05 1.66 6.22 -2.39 -0.01 1.64 16 49 H 0.06 2.04 7.25 -2.39 -0.02 2.02 16 50 H 0.34 12.81 8.49 -89.70 -0.76 12.05 16 51 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 52 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 53 H 0.40 20.92 7.90 -92.71 -0.73 20.18 16 54 H 0.28 14.60 8.31 -92.70 -0.77 13.83 16 Total: -1.00 -74.65 414.36 0.96 -73.68 By element: Atomic # 1 Polarization: 45.23 SS G_CDS: -0.60 Total: 44.63 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 6.14 Total: 16.31 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -6.52 Total: -126.70 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -0.08 Total: -54.27 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -74.65 0.96 -73.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484615193.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.701 kcal (2) G-P(sol) polarization free energy of solvation -74.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds