Wall clock time and date at job start Tue Mar 31 2020 23:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47376 * 2 1 4 4 C 1.53006 * 109.47173 * 177.28682 * 3 2 1 5 5 H 1.09001 * 109.46906 * 303.57066 * 4 3 2 6 6 O 1.42901 * 109.47135 * 63.56993 * 4 3 2 7 7 C 1.42902 * 114.00124 * 258.10693 * 6 4 3 8 8 C 1.50704 * 109.47074 * 183.56912 * 4 3 2 9 9 O 1.21275 * 119.99960 * 254.47561 * 8 4 3 10 10 N 1.34776 * 119.99818 * 74.47205 * 8 4 3 11 11 C 1.47183 * 125.73805 * 355.30774 * 10 8 4 12 12 C 1.54316 * 107.29543 * 181.02713 * 11 10 8 13 13 C 1.55160 * 102.94128 * 22.28496 * 12 11 10 14 14 H 1.08996 * 111.03592 * 82.58629 * 13 12 11 15 15 N 1.46903 * 111.00201 * 206.42166 * 13 12 11 16 16 C 1.46899 * 111.00374 * 293.61917 * 15 13 12 17 17 C 1.53235 * 109.34115 * 172.74659 * 16 15 13 18 18 N 1.47083 * 108.52230 * 53.82944 * 17 16 15 19 19 C 1.36928 * 120.87970 * 128.79287 * 18 17 16 20 20 H 1.08007 * 120.00359 * 210.77660 * 19 18 17 21 21 C 1.38817 * 120.00412 * 30.77190 * 19 18 17 22 22 N 1.31617 * 119.99613 * 9.73095 * 21 19 18 23 23 Si 1.86798 * 120.00480 * 189.72516 * 21 19 18 24 24 H 1.48496 * 109.47056 * 89.99919 * 23 21 19 25 25 H 1.48494 * 109.47551 * 210.00151 * 23 21 19 26 26 H 1.48501 * 109.47042 * 330.00376 * 23 21 19 27 27 C 1.47074 * 118.23545 * 308.81793 * 18 17 16 28 28 C 1.46905 * 110.99749 * 169.31386 * 15 13 12 29 29 C 1.47425 * 125.64725 * 175.44260 * 10 8 4 30 30 H 1.08992 * 109.47581 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46901 * 300.00616 * 1 2 3 32 32 H 1.08995 * 109.46800 * 59.99931 * 1 2 3 33 33 H 1.08996 * 109.47022 * 239.99460 * 2 1 3 34 34 H 1.09008 * 109.46795 * 119.99706 * 2 1 3 35 35 H 1.08995 * 109.47569 * 57.28545 * 3 2 1 36 36 H 1.09001 * 109.46915 * 297.28126 * 3 2 1 37 37 H 1.08995 * 109.46680 * 303.40158 * 7 6 4 38 38 H 1.08997 * 109.47195 * 63.39834 * 7 6 4 39 39 H 1.08997 * 109.47347 * 183.39938 * 7 6 4 40 40 H 1.08996 * 109.79851 * 61.64110 * 11 10 8 41 41 H 1.09006 * 109.94424 * 300.49710 * 11 10 8 42 42 H 1.09002 * 110.72256 * 263.92148 * 12 11 10 43 43 H 1.09007 * 110.87321 * 140.71607 * 12 11 10 44 44 H 1.08996 * 109.48919 * 292.70862 * 16 15 13 45 45 H 1.09003 * 109.48695 * 52.78890 * 16 15 13 46 46 H 1.09003 * 109.62902 * 294.12016 * 17 16 15 47 47 H 1.08993 * 109.62926 * 173.54125 * 17 16 15 48 48 H 0.96998 * 120.00095 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.62929 * 291.47053 * 27 18 17 50 50 H 1.09004 * 109.62866 * 170.89363 * 27 18 17 51 51 H 1.08998 * 109.49363 * 307.21500 * 28 15 13 52 52 H 1.08999 * 109.48726 * 67.27518 * 28 15 13 53 53 H 1.09001 * 110.36369 * 36.99816 * 29 10 8 54 54 H 1.09001 * 110.36655 * 274.78395 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5686 1.4429 0.0683 5 1 3.8931 0.8883 0.9488 6 8 4.0981 0.8244 -1.1061 7 6 4.5375 -0.5207 -0.9069 8 6 4.0670 2.8624 0.1567 9 8 4.5777 3.3870 -0.8101 10 7 3.9452 3.5487 1.3102 11 6 3.2631 3.0741 2.5250 12 6 3.3551 4.2027 3.5734 13 6 3.5868 5.4667 2.7038 14 1 2.6446 5.8511 2.3133 15 7 4.3016 6.5029 3.4611 16 6 3.4753 7.0143 4.5628 17 6 4.3155 7.9549 5.4331 18 7 4.9074 8.9872 4.5686 19 6 4.7832 10.3160 4.8746 20 1 4.7490 11.0514 4.0843 21 6 4.7009 10.7182 6.2007 22 7 4.9331 9.8541 7.1660 23 14 4.2610 12.4857 6.6153 24 1 2.7870 12.6115 6.7448 25 1 4.9050 12.8686 7.8973 26 1 4.7410 13.3821 5.5330 27 6 5.6358 8.5542 3.3665 28 6 4.7437 7.5900 2.5774 29 6 4.4713 4.9023 1.5642 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6376 1.9702 0.8646 36 1 1.7171 1.9420 -0.9134 37 1 5.2803 -0.5459 -0.1096 38 1 3.6868 -1.1437 -0.6306 39 1 4.9804 -0.8985 -1.8283 40 1 3.7579 2.1784 2.9002 41 1 2.2178 2.8577 2.3040 42 1 4.1972 4.0372 4.2454 43 1 2.4252 4.2869 4.1360 44 1 2.6235 7.5591 4.1558 45 1 3.1191 6.1803 5.1675 46 1 5.1080 7.3896 5.9237 47 1 3.6797 8.4256 6.1828 48 1 4.8761 10.1352 8.0926 49 1 6.5552 8.0466 3.6584 50 1 5.8729 9.4213 2.7499 51 1 5.3073 7.1737 1.7425 52 1 3.8741 8.1266 2.1979 53 1 4.3780 5.5194 0.6706 54 1 5.5127 4.8511 1.8820 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484702174.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:24 Heat of formation + Delta-G solvation = -67.825218 kcal Electronic energy + Delta-G solvation = -30902.678682 eV Core-core repulsion = 26874.493963 eV Total energy + Delta-G solvation = -4028.184719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.52793 -40.11007 -38.87696 -37.98091 -35.91923 -35.41201 -33.43916 -31.95327 -31.82069 -30.84824 -29.52662 -27.76025 -27.48819 -25.76327 -24.67407 -24.45384 -23.28014 -22.16961 -21.61932 -20.83117 -20.41063 -18.85674 -18.53617 -17.84878 -17.37239 -16.94430 -16.79781 -16.39875 -15.96612 -15.72733 -15.57186 -15.47374 -15.25723 -15.12086 -14.88790 -14.69008 -14.53756 -14.23237 -13.95588 -13.77991 -13.66371 -13.45437 -13.19943 -13.06180 -12.92087 -12.71185 -12.54287 -12.51346 -12.44550 -12.26645 -12.17275 -12.02389 -11.98919 -11.88943 -11.80862 -11.47175 -11.45291 -11.35197 -11.11649 -10.59578 -10.42908 -9.74990 -9.32628 -8.62230 -7.87146 -5.37881 1.44504 1.46875 1.47081 1.56555 1.61971 2.49712 2.81823 2.99203 3.27328 3.29342 3.61243 3.65429 3.70116 3.79242 3.84357 4.04347 4.12880 4.20193 4.23768 4.31585 4.32123 4.38062 4.47312 4.52947 4.53644 4.58376 4.60566 4.66233 4.69142 4.72005 4.78148 4.83220 4.87878 4.88293 4.95130 4.99892 5.02182 5.03758 5.15127 5.19801 5.24159 5.27614 5.32341 5.38796 5.45613 5.61174 5.73292 6.04836 6.13123 6.23443 6.40241 6.42715 7.03053 7.15335 7.83358 8.38830 9.18924 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025975 B = 0.002117 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.686869 B =13224.724527 C =13725.010386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.130 4.130 4 C 0.085 3.915 5 H 0.116 0.884 6 O -0.392 6.392 7 C 0.017 3.983 8 C 0.517 3.483 9 O -0.578 6.578 10 N -0.614 5.614 11 C 0.098 3.902 12 C -0.116 4.116 13 C 0.071 3.929 14 H 0.051 0.949 15 N -0.525 5.525 16 C 0.055 3.945 17 C 0.186 3.814 18 N -0.615 5.615 19 C -0.265 4.265 20 H 0.062 0.938 21 C -0.048 4.048 22 N -0.934 5.934 23 Si 0.970 3.030 24 H -0.283 1.283 25 H -0.293 1.293 26 H -0.272 1.272 27 C 0.146 3.854 28 C 0.053 3.947 29 C 0.119 3.881 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.017 0.983 45 H 0.092 0.908 46 H 0.001 0.999 47 H 0.058 0.942 48 H 0.251 0.749 49 H 0.017 0.983 50 H 0.056 0.944 51 H 0.084 0.916 52 H 0.022 0.978 53 H 0.058 0.942 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.683 -25.212 -10.234 28.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.168 4.168 4 C 0.024 3.976 5 H 0.133 0.867 6 O -0.310 6.310 7 C -0.078 4.078 8 C 0.306 3.694 9 O -0.457 6.457 10 N -0.349 5.349 11 C -0.024 4.024 12 C -0.154 4.154 13 C -0.038 4.038 14 H 0.069 0.931 15 N -0.251 5.251 16 C -0.074 4.074 17 C 0.060 3.940 18 N -0.340 5.340 19 C -0.395 4.395 20 H 0.080 0.920 21 C -0.244 4.244 22 N -0.580 5.580 23 Si 0.798 3.202 24 H -0.210 1.210 25 H -0.219 1.219 26 H -0.196 1.196 27 C 0.020 3.980 28 C -0.076 4.076 29 C -0.004 4.004 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.120 0.880 44 H 0.036 0.964 45 H 0.110 0.890 46 H 0.019 0.981 47 H 0.077 0.923 48 H 0.060 0.940 49 H 0.035 0.965 50 H 0.075 0.925 51 H 0.102 0.898 52 H 0.040 0.960 53 H 0.076 0.924 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.965 -25.074 -10.636 28.377 hybrid contribution -0.430 1.735 0.155 1.794 sum -8.396 -23.339 -10.481 26.927 Atomic orbital electron populations 1.21766 0.94961 1.02335 1.01947 1.21567 0.96624 0.94528 1.02961 1.22063 0.91297 0.99928 1.03482 1.22054 0.95462 0.89260 0.90810 0.86651 1.88006 1.81718 1.28932 1.32334 1.23231 0.99686 0.81535 1.03386 1.21047 0.78445 0.89045 0.80855 1.90694 1.46343 1.71267 1.37408 1.48519 1.56042 1.17116 1.13210 1.22483 0.98661 0.98330 0.82914 1.22704 1.04488 0.91217 0.97009 1.22747 0.94614 0.92907 0.93559 0.93061 1.61953 1.40250 1.12072 1.10780 1.22595 0.93917 0.97877 0.93054 1.20650 0.94100 0.87720 0.91489 1.44359 1.61141 1.02440 1.26027 1.19479 1.44513 0.84333 0.91214 0.91993 1.25912 1.00907 1.01401 0.96140 1.70123 1.53660 1.35307 0.98906 0.85227 0.77684 0.80142 0.77110 1.20985 1.21920 1.19647 1.21088 0.93124 0.95455 0.88320 1.22467 0.98120 0.92034 0.94985 1.22071 0.98087 0.83003 0.97281 0.91695 0.91973 0.93522 0.91770 0.89940 0.88731 0.92596 0.92987 0.91255 0.88755 0.88345 0.88581 0.89534 0.88017 0.96437 0.88963 0.98087 0.92320 0.93963 0.96506 0.92545 0.89761 0.96018 0.92368 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 71.98 0.71 -0.55 16 2 C -0.12 -1.05 4.93 30.59 0.15 -0.90 16 3 C -0.13 -1.72 4.85 30.59 0.15 -1.57 16 4 C 0.09 1.47 2.09 29.85 0.06 1.53 16 5 H 0.12 1.24 7.31 -2.39 -0.02 1.22 16 6 O -0.39 -8.34 9.63 -130.35 -1.26 -9.59 16 7 C 0.02 0.20 10.41 113.37 1.18 1.39 16 8 C 0.52 13.31 7.15 87.66 0.63 13.94 16 9 O -0.58 -21.16 16.79 15.61 0.26 -20.90 16 10 N -0.61 -13.33 3.33 -811.40 -2.70 -16.04 16 11 C 0.10 1.28 6.13 86.70 0.53 1.81 16 12 C -0.12 -1.99 5.55 31.78 0.18 -1.81 16 13 C 0.07 1.75 2.72 46.31 0.13 1.88 16 14 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 15 N -0.53 -17.03 4.53 -861.91 -3.90 -20.93 16 16 C 0.05 1.96 5.51 86.38 0.48 2.44 16 17 C 0.19 8.93 5.36 86.35 0.46 9.39 16 18 N -0.62 -31.56 3.03 -698.14 -2.11 -33.67 16 19 C -0.27 -14.78 9.62 84.04 0.81 -13.97 16 20 H 0.06 3.40 7.85 -2.91 -0.02 3.37 16 21 C -0.05 -2.69 5.08 84.86 0.43 -2.26 16 22 N -0.93 -54.90 11.02 21.65 0.24 -54.66 16 23 Si 0.97 44.92 29.56 68.60 2.03 46.95 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 27 C 0.15 6.29 6.69 86.35 0.58 6.87 16 28 C 0.05 1.88 5.44 86.38 0.47 2.35 16 29 C 0.12 3.08 5.11 86.85 0.44 3.52 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.65 6.46 -2.39 -0.02 0.64 16 34 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.09 0.95 5.72 -2.39 -0.01 0.94 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 0.52 8.05 -2.39 -0.02 0.50 16 38 H 0.07 0.50 6.05 -2.39 -0.01 0.49 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 0.83 7.98 -2.39 -0.02 0.81 16 41 H 0.10 0.84 6.08 -2.38 -0.01 0.83 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.10 1.40 7.95 -2.38 -0.02 1.38 16 44 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.09 2.76 7.04 -2.39 -0.02 2.74 16 46 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 47 H 0.06 3.16 6.20 -2.39 -0.01 3.14 16 48 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 49 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.06 2.37 7.95 -2.39 -0.02 2.35 16 51 H 0.08 2.62 6.65 -2.39 -0.02 2.60 16 52 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 53 H 0.06 1.71 7.71 -2.39 -0.02 1.69 16 54 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -75.06 408.95 0.80 -74.26 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.86 Total: 10.53 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: 7.39 Total: 24.05 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -8.48 Total: -125.30 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.99 Total: -30.49 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -75.06 0.80 -74.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484702174.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.440 kcal (2) G-P(sol) polarization free energy of solvation -75.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds