Wall clock time and date at job start Tue Mar 31 2020 23:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46910 * 2 1 4 4 C 1.53005 * 109.47106 * 183.82413 * 3 2 1 5 5 H 1.09002 * 109.46818 * 176.38088 * 4 3 2 6 6 O 1.42897 * 109.47246 * 296.38393 * 4 3 2 7 7 C 1.42899 * 113.99916 * 273.73651 * 6 4 3 8 8 C 1.50701 * 109.46570 * 56.38536 * 4 3 2 9 9 O 1.21283 * 119.99954 * 253.11383 * 8 4 3 10 10 N 1.34780 * 120.00108 * 73.11832 * 8 4 3 11 11 C 1.47024 * 125.64860 * 355.00236 * 10 8 4 12 12 C 1.54318 * 107.26967 * 178.89878 * 11 10 8 13 13 C 1.55158 * 102.94369 * 337.80796 * 12 11 10 14 14 H 1.09000 * 111.00699 * 277.42664 * 13 12 11 15 15 N 1.46903 * 111.00434 * 153.58021 * 13 12 11 16 16 C 1.46902 * 110.99898 * 185.75592 * 15 13 12 17 17 C 1.53243 * 109.33630 * 172.74126 * 16 15 13 18 18 N 1.47082 * 108.51846 * 53.83331 * 17 16 15 19 19 C 1.36937 * 120.88029 * 128.83756 * 18 17 16 20 20 H 1.07997 * 119.99554 * 209.43330 * 19 18 17 21 21 C 1.38810 * 120.00263 * 29.42240 * 19 18 17 22 22 N 1.31628 * 119.99922 * 10.67611 * 21 19 18 23 23 Si 1.86801 * 120.00316 * 190.67129 * 21 19 18 24 24 H 1.48499 * 109.46993 * 60.00306 * 23 21 19 25 25 H 1.48498 * 109.47148 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46929 * 300.00625 * 23 21 19 27 27 C 1.47077 * 118.23478 * 308.80925 * 18 17 16 28 28 C 1.46895 * 111.00182 * 61.45332 * 15 13 12 29 29 C 1.47429 * 125.64628 * 174.95537 * 10 8 4 30 30 H 1.09000 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46488 * 299.99419 * 1 2 3 32 32 H 1.08997 * 109.47538 * 59.99857 * 1 2 3 33 33 H 1.08995 * 109.47095 * 239.99914 * 2 1 3 34 34 H 1.09004 * 109.47189 * 120.00138 * 2 1 3 35 35 H 1.09005 * 109.46946 * 63.83035 * 3 2 1 36 36 H 1.08997 * 109.47287 * 303.82864 * 3 2 1 37 37 H 1.08997 * 109.47176 * 304.96882 * 7 6 4 38 38 H 1.08996 * 109.46831 * 64.97355 * 7 6 4 39 39 H 1.09004 * 109.46888 * 184.97019 * 7 6 4 40 40 H 1.09003 * 109.87902 * 59.48126 * 11 10 8 41 41 H 1.08999 * 110.00818 * 298.38986 * 11 10 8 42 42 H 1.09004 * 110.72141 * 219.44746 * 12 11 10 43 43 H 1.08996 * 110.72252 * 96.17549 * 12 11 10 44 44 H 1.08995 * 109.49437 * 292.70214 * 16 15 13 45 45 H 1.09001 * 109.48981 * 52.78644 * 16 15 13 46 46 H 1.08999 * 109.63204 * 294.11936 * 17 16 15 47 47 H 1.09006 * 109.78295 * 173.63573 * 17 16 15 48 48 H 0.96992 * 119.99655 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.63043 * 291.47350 * 27 18 17 50 50 H 1.09002 * 109.78715 * 170.99225 * 27 18 17 51 51 H 1.09002 * 109.49114 * 307.21246 * 28 15 13 52 52 H 1.08999 * 109.49409 * 67.29400 * 28 15 13 53 53 H 1.09000 * 110.36377 * 85.33602 * 29 10 8 54 54 H 1.08994 * 110.36353 * 323.00953 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5670 1.4436 -0.0962 5 1 3.9262 2.4707 -0.1610 6 8 4.1179 0.8186 1.0647 7 6 4.3007 1.7050 2.1706 8 6 3.9933 0.6839 -1.3259 9 8 4.4917 -0.4164 -1.2165 10 7 3.8207 1.2271 -2.5473 11 6 3.1399 2.4990 -2.8309 12 6 3.2096 2.7257 -4.3558 13 6 4.4182 1.8513 -4.7823 14 1 5.3585 2.3782 -4.6198 15 7 4.2915 1.4246 -6.1823 16 6 5.3625 0.4872 -6.5460 17 6 5.0935 -0.0716 -7.9473 18 7 4.9134 1.0567 -8.8735 19 6 5.6200 1.1244 -10.0445 20 1 5.8657 2.0852 -10.4721 21 6 6.0208 -0.0418 -10.6818 22 7 5.5493 -1.2046 -10.2840 23 14 7.2291 0.0388 -12.1041 24 1 8.5008 0.6487 -11.6392 25 1 7.4927 -1.3330 -12.6081 26 1 6.6540 0.8649 -13.1959 27 6 3.9537 2.1099 -8.5089 28 6 4.2675 2.5828 -7.0855 29 6 4.2843 0.6449 -3.8199 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 1.7337 1.9361 0.9224 36 1 1.6217 1.9757 -0.8537 37 1 4.9087 2.5542 1.8589 38 1 3.3298 2.0603 2.5157 39 1 4.8030 1.1763 2.9808 40 1 3.6447 3.3135 -2.3115 41 1 2.0992 2.4443 -2.5114 42 1 3.3948 3.7759 -4.5815 43 1 2.2952 2.3818 -4.8390 44 1 6.3197 1.0085 -6.5398 45 1 5.3890 -0.3315 -5.8269 46 1 4.1895 -0.6803 -7.9315 47 1 5.9386 -0.6795 -8.2706 48 1 5.8291 -2.0194 -10.7295 49 1 2.9401 1.7109 -8.5471 50 1 4.0440 2.9471 -9.2011 51 1 3.5000 3.2839 -6.7577 52 1 5.2400 3.0749 -7.0718 53 1 3.5508 -0.0653 -4.2016 54 1 5.2502 0.1583 -3.6848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484702175.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:28 Heat of formation + Delta-G solvation = -67.113585 kcal Electronic energy + Delta-G solvation = -31146.991203 eV Core-core repulsion = 27118.837343 eV Total energy + Delta-G solvation = -4028.153860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.56508 -40.11355 -38.80338 -37.93589 -35.93182 -35.50288 -33.39050 -32.14676 -31.55339 -30.71319 -29.58519 -27.71678 -27.55850 -25.68458 -24.62602 -24.54355 -23.48661 -22.13918 -21.60759 -20.80944 -20.38171 -18.82298 -18.34108 -17.85235 -17.43857 -16.87629 -16.61448 -16.44733 -16.16514 -15.79877 -15.53481 -15.35202 -15.27573 -15.04414 -14.86817 -14.77231 -14.58854 -14.13025 -14.11169 -13.88002 -13.52797 -13.43490 -13.16551 -13.11324 -12.98469 -12.68029 -12.55531 -12.50653 -12.41407 -12.27354 -12.25536 -12.02311 -11.92991 -11.86963 -11.78340 -11.48837 -11.43724 -11.37568 -10.96088 -10.59299 -10.52333 -9.73293 -9.31768 -8.64005 -7.86666 -5.36540 1.45992 1.48190 1.48705 1.55068 1.62276 2.49991 2.83361 3.03546 3.29803 3.31972 3.61192 3.65838 3.70213 3.72383 3.90444 4.06996 4.11752 4.19534 4.24294 4.32311 4.35132 4.39044 4.49963 4.51444 4.54232 4.57592 4.62680 4.64198 4.70912 4.71950 4.79399 4.84332 4.87932 4.90081 4.90652 4.96485 4.98456 5.09396 5.14717 5.22908 5.24981 5.26129 5.27817 5.39539 5.43334 5.60651 5.70158 6.07380 6.13656 6.25185 6.39363 6.46016 7.06627 7.14010 7.84111 8.38793 9.19395 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022471 B = 0.002226 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.724999 B =12574.692761 C =12723.805173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C -0.132 4.132 4 C 0.081 3.919 5 H 0.115 0.885 6 O -0.395 6.395 7 C 0.022 3.978 8 C 0.525 3.475 9 O -0.578 6.578 10 N -0.614 5.614 11 C 0.095 3.905 12 C -0.114 4.114 13 C 0.072 3.928 14 H 0.053 0.947 15 N -0.527 5.527 16 C 0.051 3.949 17 C 0.188 3.812 18 N -0.615 5.615 19 C -0.262 4.262 20 H 0.069 0.931 21 C -0.054 4.054 22 N -0.939 5.939 23 Si 0.971 3.029 24 H -0.278 1.278 25 H -0.296 1.296 26 H -0.273 1.273 27 C 0.143 3.857 28 C 0.058 3.942 29 C 0.120 3.880 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.028 0.972 34 H 0.053 0.947 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.018 0.982 45 H 0.068 0.932 46 H -0.004 1.004 47 H 0.056 0.944 48 H 0.249 0.751 49 H 0.017 0.983 50 H 0.063 0.937 51 H 0.107 0.893 52 H 0.023 0.977 53 H 0.063 0.937 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.272 14.659 24.741 30.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.170 4.170 4 C 0.020 3.980 5 H 0.133 0.867 6 O -0.313 6.313 7 C -0.074 4.074 8 C 0.314 3.686 9 O -0.457 6.457 10 N -0.349 5.349 11 C -0.026 4.026 12 C -0.152 4.152 13 C -0.037 4.037 14 H 0.071 0.929 15 N -0.252 5.252 16 C -0.079 4.079 17 C 0.062 3.938 18 N -0.340 5.340 19 C -0.392 4.392 20 H 0.087 0.913 21 C -0.249 4.249 22 N -0.585 5.585 23 Si 0.799 3.201 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.199 1.199 27 C 0.017 3.983 28 C -0.071 4.071 29 C -0.003 4.003 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.128 0.872 43 H 0.106 0.894 44 H 0.037 0.963 45 H 0.087 0.913 46 H 0.015 0.985 47 H 0.074 0.926 48 H 0.059 0.941 49 H 0.035 0.965 50 H 0.081 0.919 51 H 0.125 0.875 52 H 0.042 0.958 53 H 0.081 0.919 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.370 13.474 24.766 29.710 hybrid contribution 1.688 -0.439 -1.084 2.053 sum -7.682 13.035 23.682 28.102 Atomic orbital electron populations 1.21733 0.94024 1.01823 1.02711 1.21420 0.97009 0.96855 1.00748 1.22163 0.91455 0.97803 1.05552 1.22059 0.95782 0.96459 0.83657 0.86730 1.88018 1.84005 1.37207 1.22115 1.23098 1.01753 0.94283 0.88254 1.20741 0.77763 0.85915 0.84159 1.90708 1.46123 1.22280 1.86581 1.48432 1.57248 1.24388 1.04838 1.22498 0.98819 0.84627 0.96702 1.22734 0.97769 1.01022 0.93642 1.22738 0.98992 0.94662 0.87323 0.92874 1.61918 1.45969 1.15786 1.01552 1.22563 0.91589 0.95589 0.98127 1.20580 0.98138 0.89073 0.86036 1.44365 1.45717 1.23896 1.19983 1.19507 1.27792 0.92326 0.99608 0.91309 1.25934 1.02370 0.95693 1.00894 1.70145 1.46403 0.97746 1.44220 0.85285 0.79083 0.76266 0.79449 1.20412 1.22177 1.19856 1.21168 0.91652 0.91292 0.94172 1.22488 1.00230 0.91494 0.92840 1.22013 0.99050 0.96232 0.83028 0.93399 0.91083 0.92008 0.95266 0.92809 0.87883 0.88229 0.92474 0.91726 0.88938 0.88306 0.88463 0.87234 0.89363 0.96343 0.91318 0.98544 0.92582 0.94143 0.96469 0.91860 0.87497 0.95832 0.91885 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.29 16 2 C -0.12 -2.28 5.56 30.59 0.17 -2.11 16 3 C -0.13 -1.63 5.02 30.59 0.15 -1.47 16 4 C 0.08 1.40 2.22 29.85 0.07 1.47 16 5 H 0.12 1.19 7.43 -2.39 -0.02 1.17 16 6 O -0.39 -8.50 9.47 -130.28 -1.23 -9.73 16 7 C 0.02 0.25 10.84 113.37 1.23 1.48 16 8 C 0.52 13.92 5.69 87.66 0.50 14.41 16 9 O -0.58 -21.94 16.77 15.66 0.26 -21.68 16 10 N -0.61 -13.78 3.33 -811.79 -2.70 -16.48 16 11 C 0.09 1.18 6.06 86.73 0.53 1.71 16 12 C -0.11 -1.73 5.31 31.78 0.17 -1.56 16 13 C 0.07 1.77 2.71 46.31 0.13 1.90 16 14 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 15 N -0.53 -17.09 4.53 -861.90 -3.90 -20.99 16 16 C 0.05 2.02 5.48 86.38 0.47 2.49 16 17 C 0.19 9.49 5.38 86.35 0.46 9.96 16 18 N -0.62 -31.49 3.03 -698.13 -2.12 -33.61 16 19 C -0.26 -14.55 9.64 84.03 0.81 -13.74 16 20 H 0.07 3.67 7.85 -2.91 -0.02 3.64 16 21 C -0.05 -3.06 5.07 84.86 0.43 -2.63 16 22 N -0.94 -56.86 10.97 21.65 0.24 -56.62 16 23 Si 0.97 45.42 29.57 68.60 2.03 47.45 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 27 C 0.14 5.78 6.69 86.35 0.58 6.35 16 28 C 0.06 1.81 5.48 86.38 0.47 2.29 16 29 C 0.12 3.35 5.33 86.85 0.46 3.82 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.03 0.74 6.91 -2.39 -0.02 0.72 16 34 H 0.05 1.16 7.89 -2.38 -0.02 1.14 16 35 H 0.10 0.77 7.60 -2.38 -0.02 0.76 16 36 H 0.10 0.83 5.69 -2.39 -0.01 0.82 16 37 H 0.06 0.47 7.97 -2.39 -0.02 0.45 16 38 H 0.06 0.44 7.62 -2.39 -0.02 0.43 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 0.69 7.92 -2.39 -0.02 0.67 16 41 H 0.10 0.81 6.14 -2.39 -0.01 0.79 16 42 H 0.11 1.13 7.94 -2.39 -0.02 1.11 16 43 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 45 H 0.07 2.61 6.81 -2.39 -0.02 2.59 16 46 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.06 3.21 6.12 -2.38 -0.01 3.19 16 48 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 49 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.06 2.42 7.96 -2.39 -0.02 2.40 16 51 H 0.11 2.44 6.85 -2.39 -0.02 2.43 16 52 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 53 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 54 H 0.05 1.67 7.79 -2.39 -0.02 1.65 16 Total: -1.00 -78.38 409.75 0.77 -77.61 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.85 Total: 10.99 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: 7.34 Total: 23.05 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -8.48 Total: -127.70 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.97 Total: -31.40 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -78.38 0.77 -77.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484702175.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.498 kcal (2) G-P(sol) polarization free energy of solvation -78.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds