Wall clock time and date at job start Tue Mar 31 2020 23:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47105 * 2 1 4 4 C 1.53001 * 109.47330 * 119.99616 * 2 1 3 5 5 H 1.08997 * 109.47281 * 304.83987 * 4 2 1 6 6 C 1.50702 * 109.47208 * 184.83585 * 4 2 1 7 7 O 1.21282 * 120.00311 * 268.19611 * 6 4 2 8 8 N 1.34772 * 119.99901 * 88.19467 * 6 4 2 9 9 C 1.46497 * 120.00197 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.47234 * 179.97438 * 9 8 6 11 11 H 1.08996 * 110.29429 * 305.69655 * 10 9 8 12 12 C 1.54559 * 110.32758 * 183.55889 * 10 9 8 13 13 C 1.54739 * 104.07028 * 217.47520 * 12 10 9 14 14 C 1.53463 * 103.72311 * 0.76765 * 13 12 10 15 15 C 1.52886 * 115.57892 * 252.69150 * 14 13 12 16 16 N 1.47781 * 85.78619 * 219.73159 * 15 14 13 17 17 C 1.36938 * 134.40571 * 203.84641 * 16 15 14 18 18 H 1.07997 * 119.99569 * 184.56845 * 17 16 15 19 19 C 1.38809 * 119.99912 * 4.57889 * 17 16 15 20 20 N 1.31617 * 119.99903 * 5.74201 * 19 17 16 21 21 Si 1.86793 * 119.99923 * 185.74362 * 19 17 16 22 22 H 1.48498 * 109.47670 * 94.98266 * 21 19 17 23 23 H 1.48504 * 109.47375 * 214.97979 * 21 19 17 24 24 H 1.48503 * 109.47288 * 334.97913 * 21 19 17 25 25 C 1.47791 * 91.19355 * 23.87843 * 16 15 14 26 26 O 1.43339 * 106.32900 * 22.63999 * 14 13 12 27 27 N 1.46899 * 109.46782 * 64.84093 * 4 2 1 28 28 C 1.46901 * 110.99836 * 276.66919 * 27 4 2 29 29 C 1.46902 * 111.00327 * 40.62518 * 27 4 2 30 30 H 1.09002 * 109.46606 * 279.79514 * 1 2 3 31 31 H 1.08993 * 109.47320 * 39.79695 * 1 2 3 32 32 H 1.09002 * 109.47232 * 159.80290 * 1 2 3 33 33 H 1.09001 * 109.47272 * 240.00135 * 2 1 3 34 34 H 1.09001 * 109.46946 * 59.99934 * 3 2 1 35 35 H 1.08999 * 109.47528 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.46692 * 300.00146 * 3 2 1 37 37 H 0.97001 * 120.00324 * 359.97438 * 8 6 4 38 38 H 1.09001 * 109.47572 * 300.00185 * 9 8 6 39 39 H 1.09003 * 109.47455 * 59.99921 * 9 8 6 40 40 H 1.08996 * 110.50754 * 336.12479 * 12 10 9 41 41 H 1.09001 * 110.50628 * 98.69124 * 12 10 9 42 42 H 1.08996 * 110.57831 * 119.33332 * 13 12 10 43 43 H 1.09004 * 110.57098 * 242.06061 * 13 12 10 44 44 H 1.09001 * 113.82633 * 333.95409 * 15 14 13 45 45 H 1.09006 * 113.82065 * 105.52040 * 15 14 13 46 46 H 0.97002 * 119.99998 * 180.02562 * 20 19 17 47 47 H 1.09004 * 113.82279 * 221.91215 * 25 16 15 48 48 H 1.08998 * 113.93528 * 90.34705 * 25 16 15 49 49 H 1.09001 * 109.47362 * 68.78412 * 28 27 4 50 50 H 1.09003 * 109.47059 * 188.78538 * 28 27 4 51 51 H 1.09003 * 109.47097 * 308.78503 * 28 27 4 52 52 H 1.08998 * 109.46755 * 52.67478 * 29 27 4 53 53 H 1.09002 * 109.46847 * 172.67537 * 29 27 4 54 54 H 1.09007 * 109.46903 * 292.67216 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6077 -0.2598 2.1371 6 6 3.5423 -0.6183 1.3106 7 8 4.2303 -1.4854 0.8149 8 7 4.1212 0.4374 1.9162 9 6 5.5816 0.5378 1.9754 10 6 5.9753 1.8206 2.7103 11 1 5.4970 2.6836 2.2472 12 6 7.5113 1.9918 2.7064 13 6 7.8274 2.5842 4.1006 14 6 6.4528 2.6779 4.7764 15 6 5.8836 4.0894 4.9219 16 7 5.4191 3.6473 6.2533 17 6 4.4220 4.0480 7.1020 18 1 4.3303 3.5964 8.0788 19 6 3.5290 5.0345 6.7069 20 7 3.5689 5.5045 5.4781 21 14 2.2706 5.6951 7.9191 22 1 2.7988 6.9263 8.5595 23 1 1.0103 6.0127 7.2006 24 1 2.0019 4.6714 8.9608 25 6 6.4609 2.6003 6.3033 26 8 5.6091 1.7323 4.1067 27 7 1.6481 -2.1358 1.1923 28 6 0.2739 -2.3212 1.6772 29 6 1.8034 -2.6708 -0.1670 30 1 -0.3632 0.1748 1.0127 31 1 -0.3633 0.7895 -0.6577 32 1 -0.3634 -0.9645 -0.3548 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 3.5710 1.1311 2.3124 38 1 5.9838 -0.3243 2.5075 39 1 5.9855 0.5608 0.9632 40 1 8.0027 1.0270 2.5810 41 1 7.8168 2.6802 1.9184 42 1 8.4846 1.9183 4.6597 43 1 8.2774 3.5723 4.0038 44 1 6.6442 4.8694 4.9576 45 1 5.0754 4.3122 4.2252 46 1 2.9452 6.1941 5.2021 47 1 6.1086 1.6470 6.6974 48 1 7.3966 2.9287 6.7558 49 1 -0.4245 -1.8739 0.9700 50 1 0.0627 -3.3864 1.7721 51 1 0.1638 -1.8410 2.6496 52 1 2.8128 -2.4672 -0.5244 53 1 1.6322 -3.7472 -0.1554 54 1 1.0804 -2.1950 -0.8295 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484787128.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:31 Heat of formation + Delta-G solvation = -31.382335 kcal Electronic energy + Delta-G solvation = -31610.707766 eV Core-core repulsion = 27584.103329 eV Total energy + Delta-G solvation = -4026.604437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.60923 -41.17867 -38.86268 -37.84274 -35.74318 -34.67606 -34.05307 -33.03574 -31.03172 -29.52932 -28.72133 -28.18724 -27.76831 -26.76340 -25.36280 -23.58437 -23.10541 -22.17803 -21.90316 -20.58750 -20.55956 -18.71750 -18.26968 -17.64147 -17.25308 -17.03549 -16.74336 -16.44502 -16.14574 -15.88198 -15.72951 -15.39960 -15.30991 -14.90121 -14.73603 -14.26178 -14.20550 -14.01497 -13.66447 -13.54543 -13.43495 -13.32749 -13.15196 -12.93936 -12.91168 -12.84735 -12.66115 -12.58842 -12.57524 -12.50664 -12.26402 -12.24569 -12.12396 -12.06148 -11.66533 -11.64180 -11.30349 -11.21767 -10.92089 -10.68283 -10.40376 -10.05085 -9.14767 -8.88489 -7.87263 -5.21381 1.45038 1.46418 1.55324 1.62116 2.11533 2.47384 2.78783 3.11311 3.29457 3.42638 3.62028 3.65175 3.68616 3.76440 3.87264 3.90936 4.06196 4.19142 4.22686 4.23740 4.33652 4.44363 4.45656 4.53763 4.55908 4.59807 4.66985 4.71195 4.73668 4.74706 4.81557 4.87885 4.89552 4.92104 4.99635 5.00994 5.06031 5.09257 5.11068 5.14636 5.18623 5.24310 5.29236 5.32830 5.44180 5.46058 5.53344 5.92430 5.96326 6.10689 6.20723 6.53400 6.93555 7.24687 7.61910 8.57212 9.27644 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.003346 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.180326 B = 8365.725796 C =10115.687525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.154 4.154 4 C 0.072 3.928 5 H 0.100 0.900 6 C 0.525 3.475 7 O -0.567 6.567 8 N -0.721 5.721 9 C 0.137 3.863 10 C 0.060 3.940 11 H 0.068 0.932 12 C -0.134 4.134 13 C -0.132 4.132 14 C 0.076 3.924 15 C 0.142 3.858 16 N -0.637 5.637 17 C -0.236 4.236 18 H 0.077 0.923 19 C -0.061 4.061 20 N -0.946 5.946 21 Si 0.975 3.025 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.271 1.271 25 C 0.124 3.876 26 O -0.361 6.361 27 N -0.545 5.545 28 C 0.009 3.991 29 C 0.023 3.977 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.407 0.593 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.031 0.969 45 H 0.049 0.951 46 H 0.248 0.752 47 H 0.046 0.954 48 H 0.073 0.927 49 H 0.059 0.941 50 H 0.075 0.925 51 H 0.065 0.935 52 H 0.063 0.937 53 H 0.071 0.929 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 -11.042 -14.166 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.212 4.212 4 C -0.040 4.040 5 H 0.118 0.882 6 C 0.312 3.688 7 O -0.446 6.446 8 N -0.373 5.373 9 C 0.013 3.987 10 C 0.002 3.998 11 H 0.086 0.914 12 C -0.172 4.172 13 C -0.171 4.171 14 C 0.035 3.965 15 C 0.017 3.983 16 N -0.364 5.364 17 C -0.364 4.364 18 H 0.095 0.905 19 C -0.255 4.255 20 N -0.595 5.595 21 Si 0.803 3.197 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.196 1.196 25 C 0.000 4.000 26 O -0.280 6.280 27 N -0.269 5.269 28 C -0.138 4.138 29 C -0.124 4.124 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.242 0.758 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.077 0.923 50 H 0.094 0.906 51 H 0.084 0.916 52 H 0.081 0.919 53 H 0.089 0.911 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.061 -11.934 -13.985 18.385 hybrid contribution -1.338 1.580 0.586 2.151 sum -1.399 -10.354 -13.398 16.991 Atomic orbital electron populations 1.22126 0.92935 1.02642 1.02791 1.21663 0.97685 0.96744 0.97135 1.21973 1.01046 0.95184 1.03016 1.21824 0.91163 0.90513 1.00533 0.88202 1.20792 0.90929 0.80337 0.76728 1.90601 1.65844 1.40198 1.47972 1.46124 1.08018 1.24985 1.58137 1.21394 0.80430 0.96513 1.00328 1.23370 0.96644 0.96940 0.82862 0.91393 1.22897 0.93083 1.03330 0.97897 1.22701 0.95492 1.02986 0.95891 1.23337 0.89653 0.90010 0.93456 1.22655 0.95280 0.92992 0.87375 1.46197 1.32362 1.37922 1.19912 1.19365 1.04372 1.16777 0.95925 0.90517 1.25524 1.01218 1.00387 0.98352 1.70003 1.40093 1.31958 1.17470 0.85120 0.78172 0.78261 0.78147 1.21460 1.21828 1.19563 1.22745 0.92267 0.92172 0.92840 1.89004 1.61243 1.58881 1.18890 1.61773 1.25331 1.14365 1.25391 1.22840 0.87359 1.02941 1.00654 1.22515 1.01781 1.00175 0.87961 0.92032 0.91155 0.91293 0.90262 0.92286 0.93068 0.90922 0.75802 0.91964 0.88843 0.88831 0.88175 0.88947 0.89323 0.95141 0.93219 0.94331 0.93576 0.90975 0.92264 0.90616 0.91630 0.91862 0.91054 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 7.55 71.98 0.54 -1.65 16 2 C -0.11 -2.10 1.97 -10.79 -0.02 -2.12 16 3 C -0.15 -2.96 8.34 71.98 0.60 -2.36 16 4 C 0.07 1.68 1.90 44.17 0.08 1.76 16 5 H 0.10 2.31 7.58 -2.39 -0.02 2.29 16 6 C 0.53 15.08 6.02 87.66 0.53 15.60 16 7 O -0.57 -19.52 14.69 -3.04 -0.04 -19.56 16 8 N -0.72 -19.87 4.40 -463.07 -2.04 -21.90 16 9 C 0.14 3.60 5.27 86.38 0.46 4.05 16 10 C 0.06 1.67 3.33 31.12 0.10 1.78 16 11 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 12 C -0.13 -2.91 6.65 31.72 0.21 -2.70 16 13 C -0.13 -3.42 6.49 31.34 0.20 -3.21 16 14 C 0.08 2.84 1.28 -10.66 -0.01 2.82 16 15 C 0.14 6.69 7.20 86.09 0.62 7.31 16 16 N -0.64 -33.46 3.70 -740.93 -2.74 -36.20 16 17 C -0.24 -13.60 10.69 84.03 0.90 -12.70 16 18 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 19 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 20 N -0.95 -56.64 11.31 21.65 0.24 -56.40 16 21 Si 0.97 46.03 29.56 68.60 2.03 48.06 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 23 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 C 0.12 5.14 8.47 86.09 0.73 5.87 16 26 O -0.36 -13.71 11.13 -148.98 -1.66 -15.36 16 27 N -0.55 -12.60 4.72 -927.70 -4.38 -16.98 16 28 C 0.01 0.16 8.83 127.69 1.13 1.29 16 29 C 0.02 0.48 8.02 127.69 1.02 1.51 16 30 H 0.06 0.93 7.40 -2.39 -0.02 0.91 16 31 H 0.07 0.93 7.97 -2.39 -0.02 0.91 16 32 H 0.07 0.91 5.03 -2.39 -0.01 0.89 16 33 H 0.08 1.56 6.14 -2.39 -0.01 1.55 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 1.09 6.40 -2.39 -0.02 1.08 16 36 H 0.07 1.20 8.13 -2.38 -0.02 1.18 16 37 H 0.41 11.37 8.19 -92.71 -0.76 10.61 16 38 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.09 1.71 7.87 -2.39 -0.02 1.69 16 41 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 2.07 8.12 -2.39 -0.02 2.05 16 43 H 0.09 2.12 7.84 -2.39 -0.02 2.11 16 44 H 0.03 1.42 7.96 -2.39 -0.02 1.40 16 45 H 0.05 2.66 6.90 -2.38 -0.02 2.64 16 46 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 47 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 48 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 49 H 0.06 0.84 4.44 -2.39 -0.01 0.83 16 50 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.06 1.18 7.84 -2.39 -0.02 1.16 16 52 H 0.06 1.61 6.13 -2.39 -0.01 1.60 16 53 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 54 H 0.05 0.76 5.31 -2.38 -0.01 0.75 16 Total: -1.00 -73.17 407.01 -0.90 -74.06 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.13 Total: 30.09 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 7.56 Total: 14.18 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -8.91 Total: -131.47 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -1.70 Total: -34.93 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -73.17 -0.90 -74.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484787128.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.681 kcal (2) G-P(sol) polarization free energy of solvation -73.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds