Wall clock time and date at job start Tue Mar 31 2020 23:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47213 * 2 1 4 4 C 1.53002 * 109.46811 * 120.00235 * 2 1 3 5 5 H 1.09004 * 109.46911 * 187.11488 * 4 2 1 6 6 C 1.50693 * 109.47383 * 67.11036 * 4 2 1 7 7 O 1.21280 * 120.00015 * 275.85433 * 6 4 2 8 8 N 1.34778 * 119.99957 * 95.86136 * 6 4 2 9 9 C 1.46503 * 120.00278 * 179.97438 * 8 6 4 10 10 C 1.52995 * 109.47083 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.90199 * 59.48905 * 10 9 8 12 12 C 1.54481 * 109.82865 * 180.42152 * 10 9 8 13 13 C 1.55506 * 102.38617 * 140.87656 * 12 10 9 14 14 C 1.53885 * 100.76198 * 327.03108 * 13 12 10 15 15 C 1.52377 * 115.68020 * 263.23755 * 14 13 12 16 16 N 1.47271 * 87.69995 * 218.74425 * 15 14 13 17 17 C 1.36942 * 135.92944 * 206.17267 * 16 15 14 18 18 H 1.07990 * 120.00239 * 6.17438 * 17 16 15 19 19 C 1.38812 * 119.99637 * 186.16438 * 17 16 15 20 20 N 1.31621 * 120.00064 * 6.04745 * 19 17 16 21 21 Si 1.86800 * 119.99918 * 186.04114 * 19 17 16 22 22 H 1.48495 * 109.47144 * 265.01423 * 21 19 17 23 23 H 1.48493 * 109.47197 * 25.01633 * 21 19 17 24 24 H 1.48503 * 109.47149 * 145.01542 * 21 19 17 25 25 C 1.47274 * 88.13310 * 26.43231 * 16 15 14 26 26 O 1.42415 * 106.66924 * 34.97378 * 14 13 12 27 27 N 1.46905 * 109.46664 * 307.10916 * 4 2 1 28 28 C 1.46903 * 110.99716 * 159.40548 * 27 4 2 29 29 C 1.46897 * 110.99933 * 283.35309 * 27 4 2 30 30 H 1.08998 * 109.46820 * 64.23929 * 1 2 3 31 31 H 1.09003 * 109.47292 * 184.23839 * 1 2 3 32 32 H 1.09003 * 109.46850 * 304.23895 * 1 2 3 33 33 H 1.09001 * 109.47052 * 239.99669 * 2 1 3 34 34 H 1.08994 * 109.46947 * 154.80926 * 3 2 1 35 35 H 1.09001 * 109.46523 * 274.80422 * 3 2 1 36 36 H 1.09000 * 109.47256 * 34.80294 * 3 2 1 37 37 H 0.97001 * 119.99843 * 359.97438 * 8 6 4 38 38 H 1.09008 * 109.46843 * 59.99292 * 9 8 6 39 39 H 1.08999 * 109.46894 * 300.00340 * 9 8 6 40 40 H 1.08999 * 110.82356 * 259.10192 * 12 10 9 41 41 H 1.09002 * 110.82507 * 22.45654 * 12 10 9 42 42 H 1.08993 * 111.16161 * 209.15366 * 13 12 10 43 43 H 1.09003 * 111.15565 * 84.90609 * 13 12 10 44 44 H 1.08991 * 113.51979 * 104.03234 * 15 14 13 45 45 H 1.09006 * 113.57069 * 333.45542 * 15 14 13 46 46 H 0.97001 * 119.99918 * 179.97438 * 20 19 17 47 47 H 1.08997 * 113.51667 * 88.27307 * 25 16 15 48 48 H 1.08997 * 113.51284 * 218.86134 * 25 16 15 49 49 H 1.09005 * 109.47360 * 54.01775 * 28 27 4 50 50 H 1.08994 * 109.47034 * 174.02367 * 28 27 4 51 51 H 1.09001 * 109.46555 * 294.01965 * 28 27 4 52 52 H 1.08998 * 109.46921 * 81.12851 * 29 27 4 53 53 H 1.09005 * 109.47213 * 201.12726 * 29 27 4 54 54 H 1.09002 * 109.47644 * 321.12651 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1226 -0.6124 1.3152 6 6 1.6864 -2.1837 1.1645 7 8 0.5899 -2.5639 1.5165 8 7 2.5889 -3.0692 0.6976 9 6 2.2454 -4.4911 0.6156 10 6 3.4362 -5.2720 0.0561 11 1 4.3032 -5.1407 0.7035 12 6 3.0791 -6.7716 -0.0438 13 6 3.7470 -7.1849 -1.3859 14 6 3.5990 -5.8832 -2.1933 15 6 2.4022 -5.8225 -3.1345 16 7 3.2721 -5.1300 -4.1002 17 6 3.0905 -4.2472 -5.1312 18 1 2.1118 -3.8315 -5.3202 19 6 4.1644 -3.8864 -5.9333 20 7 5.3289 -4.4805 -5.7802 21 14 3.9570 -2.5580 -7.2300 22 1 3.6472 -3.1877 -8.5387 23 1 2.8448 -1.6547 -6.8398 24 1 5.2140 -1.7753 -7.3425 25 6 4.4218 -5.8071 -3.4769 26 8 3.7426 -4.8101 -1.2681 27 7 1.4153 -0.1348 2.4425 28 6 1.4755 -1.0640 3.5788 29 6 2.0351 1.1529 2.7822 30 1 -0.3633 0.4466 -0.9255 31 1 -0.3634 -1.0249 0.0760 32 1 -0.3633 0.5782 0.8496 33 1 1.8934 -0.5139 -0.8900 34 1 3.0379 1.4750 0.4374 35 1 2.0800 1.8136 -1.0241 36 1 1.3656 2.0663 0.5865 37 1 3.4658 -2.7651 0.4158 38 1 1.3855 -4.6198 -0.0418 39 1 2.0011 -4.8637 1.6104 40 1 3.5074 -7.3283 0.7898 41 1 1.9988 -6.9107 -0.0861 42 1 3.2061 -8.0047 -1.8585 43 1 4.7966 -7.4406 -1.2406 44 1 1.5866 -5.2030 -2.7617 45 1 2.0661 -6.8016 -3.4761 46 1 6.0793 -4.2287 -6.3409 47 1 4.6404 -6.7823 -3.9117 48 1 5.3053 -5.1744 -3.3920 49 1 2.5076 -1.3760 3.7388 50 1 1.1030 -0.5671 4.4745 51 1 0.8605 -1.9384 3.3660 52 1 1.6122 1.9367 2.1537 53 1 1.8424 1.3838 3.8299 54 1 3.1106 1.0939 2.6150 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484787129.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:35 Heat of formation + Delta-G solvation = -28.338200 kcal Electronic energy + Delta-G solvation = -31734.709321 eV Core-core repulsion = 27708.236888 eV Total energy + Delta-G solvation = -4026.472433 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.67565 -41.24025 -38.64061 -37.93422 -35.65341 -35.06795 -34.16298 -33.12224 -31.08816 -29.62028 -28.75138 -28.02828 -27.52125 -26.55834 -25.46316 -23.66980 -23.05350 -22.51435 -21.96291 -20.62832 -20.47062 -18.71979 -18.25552 -17.79784 -17.47346 -16.93994 -16.65716 -16.45906 -16.26530 -15.87556 -15.53813 -15.33767 -15.10907 -14.73293 -14.64183 -14.51642 -14.24645 -14.20850 -13.91083 -13.58793 -13.49238 -13.34379 -13.19244 -13.16937 -13.06655 -12.82929 -12.71465 -12.68167 -12.56334 -12.37086 -12.25389 -12.16305 -12.13879 -11.74106 -11.64701 -11.34268 -11.33903 -11.25410 -10.93151 -10.61411 -10.26375 -10.07033 -9.27627 -8.94565 -7.94762 -5.25285 1.42269 1.44285 1.53097 1.53814 2.06075 2.45014 2.74909 2.96345 3.28957 3.42550 3.51863 3.65231 3.73442 3.83674 3.85956 3.93838 3.95051 4.17396 4.21062 4.28243 4.35528 4.43434 4.45767 4.55127 4.57305 4.59495 4.69612 4.71397 4.78510 4.82103 4.83851 4.89368 4.93064 4.96246 4.98861 5.02172 5.07250 5.11709 5.12269 5.17516 5.23491 5.25736 5.31290 5.40961 5.45645 5.48261 5.50500 5.88957 5.89519 6.08921 6.35187 6.50783 6.88570 7.20086 7.56859 8.58381 9.24481 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009842 B = 0.003620 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.307186 B = 7733.096440 C = 9896.249787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 C -0.142 4.142 4 C 0.079 3.921 5 H 0.074 0.926 6 C 0.513 3.487 7 O -0.557 6.557 8 N -0.717 5.717 9 C 0.119 3.881 10 C 0.061 3.939 11 H 0.105 0.895 12 C -0.132 4.132 13 C -0.129 4.129 14 C 0.081 3.919 15 C 0.103 3.897 16 N -0.636 5.636 17 C -0.231 4.231 18 H 0.077 0.923 19 C -0.063 4.063 20 N -0.952 5.952 21 Si 0.977 3.023 22 H -0.284 1.284 23 H -0.271 1.271 24 H -0.290 1.290 25 C 0.167 3.833 26 O -0.362 6.362 27 N -0.530 5.530 28 C 0.012 3.988 29 C 0.012 3.988 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.409 0.591 38 H 0.046 0.954 39 H 0.092 0.908 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.035 0.965 45 H 0.059 0.941 46 H 0.249 0.751 47 H 0.039 0.961 48 H 0.027 0.973 49 H 0.024 0.976 50 H 0.082 0.918 51 H 0.068 0.932 52 H 0.086 0.914 53 H 0.076 0.924 54 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.276 3.958 21.125 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.103 4.103 3 C -0.199 4.199 4 C -0.033 4.033 5 H 0.091 0.909 6 C 0.299 3.701 7 O -0.436 6.436 8 N -0.369 5.369 9 C -0.005 4.005 10 C 0.004 3.996 11 H 0.122 0.878 12 C -0.170 4.170 13 C -0.167 4.167 14 C 0.040 3.960 15 C -0.022 4.022 16 N -0.362 5.362 17 C -0.359 4.359 18 H 0.095 0.905 19 C -0.256 4.256 20 N -0.600 5.600 21 Si 0.805 3.195 22 H -0.211 1.211 23 H -0.196 1.196 24 H -0.216 1.216 25 C 0.041 3.959 26 O -0.281 6.281 27 N -0.255 5.255 28 C -0.136 4.136 29 C -0.135 4.135 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.244 0.756 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.135 0.865 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.054 0.946 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.046 0.954 49 H 0.043 0.957 50 H 0.101 0.899 51 H 0.086 0.914 52 H 0.105 0.895 53 H 0.095 0.905 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.422 4.182 20.950 21.816 hybrid contribution 1.198 0.278 -1.302 1.791 sum -3.223 4.460 19.648 20.404 Atomic orbital electron populations 1.21635 0.94273 1.01227 1.01423 1.21033 0.97229 0.97591 0.94412 1.22086 1.01472 0.93942 1.02371 1.21843 0.97884 0.89706 0.93837 0.90869 1.20794 0.84267 0.88509 0.76487 1.90621 1.22944 1.80748 1.49254 1.46014 1.17937 1.07991 1.64927 1.21772 0.97311 0.80240 1.01207 1.23325 0.96979 0.94746 0.84572 0.87776 1.23088 1.02458 0.92849 0.98618 1.22958 1.02965 0.95838 0.94950 1.22976 0.96348 0.87125 0.89567 1.22942 0.94591 0.95654 0.89054 1.45931 1.05045 1.48513 1.36722 1.19253 0.95446 1.16058 1.05127 0.90549 1.25600 0.95811 1.02639 1.01559 1.70010 1.01857 1.45173 1.42981 0.85089 0.76971 0.78706 0.78755 1.21052 1.19575 1.21609 1.22016 0.92020 0.94532 0.87335 1.88332 1.88635 1.34845 1.16295 1.61816 1.55770 1.04721 1.03230 1.22695 0.99813 0.97756 0.93340 1.22928 0.97341 0.90704 1.02488 0.93214 0.94893 0.90987 0.92401 0.91604 0.92597 0.90417 0.75613 0.93505 0.89005 0.86501 0.89671 0.88376 0.89023 0.94641 0.92364 0.94165 0.94301 0.95422 0.95724 0.89932 0.91357 0.89524 0.90522 0.94365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.63 71.98 0.62 -2.74 16 2 C -0.08 -2.00 2.72 -10.79 -0.03 -2.03 16 3 C -0.14 -2.57 7.92 71.98 0.57 -2.00 16 4 C 0.08 1.81 1.88 44.17 0.08 1.89 16 5 H 0.07 1.45 7.42 -2.38 -0.02 1.43 16 6 C 0.51 14.25 5.35 87.65 0.47 14.72 16 7 O -0.56 -18.74 13.18 -3.03 -0.04 -18.78 16 8 N -0.72 -18.53 5.47 -463.06 -2.53 -21.06 16 9 C 0.12 2.94 5.23 86.38 0.45 3.40 16 10 C 0.06 1.45 3.62 31.10 0.11 1.57 16 11 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 12 C -0.13 -2.47 6.56 31.96 0.21 -2.26 16 13 C -0.13 -3.15 6.49 31.76 0.21 -2.94 16 14 C 0.08 2.97 1.56 -10.81 -0.02 2.95 16 15 C 0.10 4.36 8.24 83.48 0.69 5.04 16 16 N -0.64 -34.39 3.77 -740.03 -2.79 -37.18 16 17 C -0.23 -13.67 10.73 84.03 0.90 -12.77 16 18 H 0.08 4.41 7.83 -2.92 -0.02 4.39 16 19 C -0.06 -3.71 5.50 84.86 0.47 -3.25 16 20 N -0.95 -58.89 11.80 21.65 0.26 -58.64 16 21 Si 0.98 47.17 29.56 68.60 2.03 49.20 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 25 C 0.17 8.08 6.79 83.57 0.57 8.64 16 26 O -0.36 -12.98 10.69 -148.98 -1.59 -14.58 16 27 N -0.53 -11.04 3.77 -927.71 -3.50 -14.54 16 28 C 0.01 0.24 8.70 127.69 1.11 1.35 16 29 C 0.01 0.18 8.50 127.69 1.09 1.27 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.03 1.04 6.40 -2.39 -0.02 1.03 16 32 H 0.07 1.78 7.47 -2.39 -0.02 1.76 16 33 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 34 H 0.06 1.03 6.96 -2.39 -0.02 1.01 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.23 5.69 -2.39 -0.01 1.21 16 37 H 0.41 9.87 8.37 -92.71 -0.78 9.10 16 38 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.53 7.85 -2.39 -0.02 1.51 16 42 H 0.10 2.15 7.93 -2.39 -0.02 2.13 16 43 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.06 2.25 7.99 -2.38 -0.02 2.23 16 46 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 47 H 0.04 1.88 8.13 -2.39 -0.02 1.86 16 48 H 0.03 1.52 7.59 -2.39 -0.02 1.50 16 49 H 0.02 0.46 8.12 -2.38 -0.02 0.44 16 50 H 0.08 1.37 7.80 -2.39 -0.02 1.35 16 51 H 0.07 1.77 5.53 -2.39 -0.01 1.76 16 52 H 0.09 1.18 5.18 -2.39 -0.01 1.16 16 53 H 0.08 0.93 7.64 -2.38 -0.02 0.91 16 54 H 0.04 0.51 7.25 -2.39 -0.02 0.49 16 Total: -1.00 -76.30 410.70 -0.58 -76.88 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.10 Total: 25.85 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 7.50 Total: 12.85 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -8.57 Total: -131.42 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -1.63 Total: -33.35 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -76.30 -0.58 -76.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484787129.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.539 kcal (2) G-P(sol) polarization free energy of solvation -76.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds