Wall clock time and date at job start Tue Mar 31 2020 22:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47200 * 2 1 4 4 C 1.52999 * 109.46994 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47197 * 55.00020 * 4 3 2 6 6 C 1.53002 * 109.47276 * 294.99563 * 4 3 2 7 7 C 1.50710 * 109.46901 * 175.00128 * 4 3 2 8 8 O 1.21277 * 120.00214 * 95.33764 * 7 4 3 9 9 N 1.34778 * 119.99514 * 275.33987 * 7 4 3 10 10 C 1.46927 * 120.63042 * 175.32287 * 9 7 4 11 11 C 1.53195 * 108.77402 * 233.63134 * 10 9 7 12 12 C 1.53038 * 109.30823 * 305.35971 * 11 10 9 13 13 C 1.53006 * 109.46232 * 301.35827 * 12 11 10 14 14 N 1.46899 * 109.45690 * 181.38760 * 12 11 10 15 15 C 1.46903 * 111.00125 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47313 * 180.02562 * 15 14 12 17 17 O 1.21291 * 120.00040 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00115 * 180.27852 * 16 15 14 19 19 C 1.37090 * 120.00195 * 179.72426 * 18 16 15 20 20 H 1.08007 * 120.00072 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00357 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99719 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00304 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46942 * 90.00229 * 23 21 19 25 25 H 1.48501 * 109.47115 * 209.99937 * 23 21 19 26 26 H 1.48500 * 109.47141 * 330.00089 * 23 21 19 27 27 C 1.53043 * 109.54024 * 61.36878 * 12 11 10 28 28 C 1.46927 * 120.63455 * 355.33939 * 9 7 4 29 29 H 1.08996 * 109.47277 * 300.00208 * 1 2 3 30 30 H 1.08998 * 109.46851 * 60.00409 * 1 2 3 31 31 H 1.08996 * 109.47018 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47277 * 239.99792 * 2 1 3 33 33 H 1.09000 * 109.47049 * 120.00086 * 2 1 3 34 34 H 1.08996 * 109.47175 * 59.99730 * 3 2 1 35 35 H 1.09000 * 109.47190 * 300.00000 * 3 2 1 36 36 H 1.09001 * 109.46926 * 305.11169 * 6 4 3 37 37 H 1.09004 * 109.46491 * 65.11168 * 6 4 3 38 38 H 1.08997 * 109.46799 * 185.10925 * 6 4 3 39 39 H 1.08997 * 109.59164 * 113.83636 * 10 9 7 40 40 H 1.09004 * 109.58459 * 353.41420 * 10 9 7 41 41 H 1.09005 * 109.49453 * 185.41308 * 11 10 9 42 42 H 1.08995 * 109.52350 * 65.33222 * 11 10 9 43 43 H 1.09004 * 109.46840 * 300.03233 * 13 12 11 44 44 H 1.09001 * 109.46714 * 60.02733 * 13 12 11 45 45 H 1.08996 * 109.47017 * 180.02562 * 13 12 11 46 46 H 1.00908 * 111.00276 * 56.04580 * 14 12 11 47 47 H 1.09003 * 109.46606 * 60.00672 * 15 14 12 48 48 H 1.08997 * 109.47245 * 300.00151 * 15 14 12 49 49 H 0.97005 * 119.99588 * 359.72799 * 18 16 15 50 50 H 0.97006 * 120.00103 * 180.02562 * 22 21 19 51 51 H 1.09003 * 109.49245 * 58.58448 * 27 12 11 52 52 H 1.08998 * 109.49557 * 178.68311 * 27 12 11 53 53 H 1.08999 * 109.58976 * 246.16182 * 28 9 7 54 54 H 1.09000 * 109.58387 * 6.58334 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9337 0.8528 -0.8409 6 6 4.0795 0.8330 1.3083 7 6 4.0725 2.8579 -0.1232 8 8 4.3663 3.4863 0.8716 9 7 4.1952 3.4253 -1.3395 10 6 4.5853 4.8357 -1.4717 11 6 3.5476 5.5551 -2.3391 12 6 3.4016 4.8159 -3.6711 13 6 4.7572 4.7682 -4.3789 14 7 2.4316 5.5220 -4.5188 15 6 2.2655 4.8400 -5.8092 16 6 1.2659 5.5918 -6.6498 17 8 0.7436 6.5972 -6.2168 18 7 0.9485 5.1442 -7.8809 19 6 0.0349 5.8250 -8.6433 20 1 -0.4302 6.7203 -8.2577 21 6 -0.2927 5.3633 -9.9122 22 7 0.2728 4.2737 -10.3813 23 14 -1.5381 6.2905 -10.9509 24 1 -0.8365 7.3085 -11.7735 25 1 -2.2472 5.3373 -11.8418 26 1 -2.5204 6.9629 -10.0631 27 6 2.9105 3.3895 -3.4138 28 6 3.9409 2.6456 -2.5585 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.6430 1.3671 2.1523 37 1 3.7928 -0.2175 1.3555 38 1 5.1656 0.9154 1.3486 39 1 5.5653 4.9010 -1.9443 40 1 4.6215 5.2987 -0.4855 41 1 3.8750 6.5781 -2.5247 42 1 2.5877 5.5683 -1.8231 43 1 5.1070 5.7840 -4.5629 44 1 5.4771 4.2443 -3.7501 45 1 4.6533 4.2421 -5.3279 46 1 2.7010 6.4854 -4.6513 47 1 1.9076 3.8244 -5.6399 48 1 3.2234 4.8059 -6.3281 49 1 1.3665 4.3403 -8.2273 50 1 0.0444 3.9515 -11.2673 51 1 1.9566 3.4226 -2.8874 52 1 2.7844 2.8711 -4.3643 53 1 4.8683 2.5322 -3.1199 54 1 3.5519 1.6635 -2.2896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484915813.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:22 Heat of formation + Delta-G solvation = -110.308274 kcal Electronic energy + Delta-G solvation = -30837.535773 eV Core-core repulsion = 26807.508851 eV Total energy + Delta-G solvation = -4030.026922 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.71741 -40.35172 -39.42068 -37.02651 -36.45323 -35.83451 -33.35449 -33.12309 -32.31929 -31.94728 -28.78845 -28.22876 -27.56758 -26.40586 -25.25108 -24.68291 -23.39790 -21.85858 -21.03577 -20.51078 -19.88738 -18.97476 -18.52758 -17.76259 -16.98682 -16.75785 -16.47422 -16.33544 -16.18488 -16.03648 -15.73760 -15.54145 -15.19276 -15.04408 -14.87351 -14.42648 -14.21327 -14.12757 -13.90177 -13.59122 -13.51665 -13.35883 -13.17434 -12.98818 -12.91573 -12.83701 -12.79394 -12.69242 -12.42705 -12.34822 -12.15787 -12.12022 -12.08410 -11.98424 -11.77382 -11.60177 -11.49643 -11.37922 -11.26735 -10.58891 -10.33176 -10.00508 -9.67493 -9.24693 -8.46303 -5.94540 1.37830 1.41916 1.54252 1.58433 2.00827 2.06869 2.29355 2.90228 3.21187 3.43652 3.49835 3.69082 3.81406 3.84989 3.92928 4.08051 4.09189 4.25235 4.28295 4.31352 4.32240 4.36201 4.40262 4.47073 4.56175 4.60938 4.63521 4.64229 4.70013 4.78907 4.81627 4.89112 4.90429 4.94706 4.96240 4.99928 5.05307 5.12343 5.15431 5.23522 5.27705 5.32014 5.41511 5.41589 5.45168 5.50839 5.55485 5.92947 6.16583 6.40427 6.43373 6.61490 7.13841 7.16375 7.57735 8.13628 8.71044 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014691 B = 0.002340 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.471412 B =11961.650484 C =13139.242787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.105 4.105 4 C -0.106 4.106 5 H 0.120 0.880 6 C -0.131 4.131 7 C 0.513 3.487 8 O -0.588 6.588 9 N -0.607 5.607 10 C 0.117 3.883 11 C -0.113 4.113 12 C 0.116 3.884 13 C -0.184 4.184 14 N -0.673 5.673 15 C 0.065 3.935 16 C 0.436 3.564 17 O -0.626 6.626 18 N -0.573 5.573 19 C -0.333 4.333 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.275 1.275 27 C -0.123 4.123 28 C 0.106 3.894 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.342 0.658 47 H 0.106 0.894 48 H 0.070 0.930 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.060 0.940 52 H 0.087 0.913 53 H 0.093 0.907 54 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.135 -12.690 17.159 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.144 4.144 4 C -0.127 4.127 5 H 0.137 0.863 6 C -0.189 4.189 7 C 0.303 3.697 8 O -0.468 6.468 9 N -0.339 5.339 10 C -0.006 4.006 11 C -0.151 4.151 12 C 0.025 3.975 13 C -0.243 4.243 14 N -0.305 5.305 15 C -0.067 4.067 16 C 0.224 3.776 17 O -0.512 6.512 18 N -0.210 5.210 19 C -0.463 4.463 20 H 0.094 0.906 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.200 1.200 27 C -0.161 4.161 28 C -0.016 4.016 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.161 0.839 47 H 0.124 0.876 48 H 0.088 0.912 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.079 0.921 52 H 0.106 0.894 53 H 0.111 0.889 54 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.363 -12.090 18.052 24.072 hybrid contribution 0.139 0.850 -1.298 1.558 sum 10.502 -11.240 16.754 22.745 Atomic orbital electron populations 1.21797 0.96085 1.02069 1.01489 1.21540 0.95627 0.94933 1.03357 1.21539 0.91841 0.98857 1.02118 1.21443 0.97496 0.91609 1.02191 0.86268 1.21662 1.00743 1.01359 0.95109 1.21307 0.76250 0.89986 0.82145 1.90652 1.52104 1.66086 1.37960 1.48250 1.67614 1.11744 1.06337 1.21577 0.97832 0.80828 1.00402 1.21820 0.99297 0.99426 0.94599 1.20952 0.89973 0.94247 0.92306 1.22646 0.97481 1.02628 1.01496 1.60258 1.50456 1.05896 1.13880 1.21589 0.96878 0.98512 0.89762 1.20988 0.86699 0.87136 0.82757 1.90495 1.58261 1.29464 1.73029 1.41919 1.38736 1.26395 1.13989 1.19628 1.19651 1.09327 0.97649 0.90573 1.25992 1.00028 0.97238 0.97890 1.69662 1.44118 1.22753 1.19471 0.84971 0.77916 0.77956 0.77768 1.19641 1.19460 1.19975 1.22007 0.98924 0.94265 1.00940 1.22082 0.99794 0.95335 0.84400 0.93304 0.93266 0.91793 0.90369 0.90745 0.92979 0.91799 0.93522 0.89383 0.93023 0.89539 0.90665 0.90288 0.92756 0.92671 0.90012 0.91772 0.83879 0.87582 0.91242 0.76915 0.91287 0.92120 0.89430 0.88903 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.91 71.98 0.71 -1.25 16 2 C -0.12 -1.25 5.69 30.59 0.17 -1.07 16 3 C -0.11 -1.52 4.52 30.59 0.14 -1.38 16 4 C -0.11 -1.52 1.89 -11.54 -0.02 -1.54 16 5 H 0.12 1.06 6.29 -2.39 -0.02 1.05 16 6 C -0.13 -1.85 8.26 71.98 0.59 -1.26 16 7 C 0.51 10.94 6.81 87.66 0.60 11.54 16 8 O -0.59 -17.50 15.63 -3.02 -0.05 -17.54 16 9 N -0.61 -10.94 2.97 -818.89 -2.43 -13.38 16 10 C 0.12 2.22 5.95 86.36 0.51 2.74 16 11 C -0.11 -2.37 5.17 30.67 0.16 -2.21 16 12 C 0.12 2.43 0.71 3.56 0.00 2.43 16 13 C -0.18 -3.14 7.47 71.98 0.54 -2.60 16 14 N -0.67 -20.08 5.71 -474.00 -2.71 -22.79 16 15 C 0.06 2.08 5.38 85.56 0.46 2.54 16 16 C 0.44 20.35 7.82 87.66 0.69 21.04 16 17 O -0.63 -34.60 15.78 -3.06 -0.05 -34.64 16 18 N -0.57 -28.87 5.29 -306.98 -1.62 -30.49 16 19 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 20 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 22 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 23 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 C -0.12 -2.21 4.71 30.67 0.14 -2.07 16 28 C 0.11 1.37 5.78 86.36 0.50 1.87 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.68 6.68 -2.39 -0.02 0.67 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 1.01 8.01 -2.39 -0.02 0.99 16 36 H 0.05 0.83 8.04 -2.39 -0.02 0.81 16 37 H 0.09 0.80 6.82 -2.38 -0.02 0.78 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.09 1.35 6.69 -2.39 -0.02 1.33 16 40 H 0.07 1.72 7.03 -2.38 -0.02 1.70 16 41 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 1.09 4.98 -2.39 -0.01 1.08 16 45 H 0.06 1.11 6.40 -2.39 -0.02 1.09 16 46 H 0.34 11.05 8.42 -89.69 -0.76 10.30 16 47 H 0.11 3.03 6.27 -2.39 -0.01 3.01 16 48 H 0.07 1.94 6.30 -2.39 -0.02 1.93 16 49 H 0.40 18.79 7.90 -92.70 -0.73 18.06 16 50 H 0.28 13.78 8.31 -92.70 -0.77 13.01 16 51 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.09 1.47 6.33 -2.39 -0.02 1.46 16 53 H 0.09 0.91 6.69 -2.39 -0.02 0.89 16 54 H 0.11 0.99 5.27 -2.39 -0.01 0.97 16 Total: -1.00 -72.31 409.57 1.36 -70.95 By element: Atomic # 1 Polarization: 41.66 SS G_CDS: -0.57 Total: 41.09 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 6.48 Total: 10.65 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -6.48 Total: -115.15 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -0.10 Total: -52.19 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -72.31 1.36 -70.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484915813.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.353 kcal (2) G-P(sol) polarization free energy of solvation -72.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds